Wall clock time and date at job start Mon Mar 30 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47060 * 2 1 4 4 C 1.50694 * 109.47034 * 119.99936 * 2 1 3 5 5 C 1.38290 * 119.97634 * 299.97769 * 4 2 1 6 6 C 1.38241 * 120.11310 * 180.02562 * 5 4 2 7 7 C 1.38172 * 120.05687 * 359.67792 * 6 5 4 8 8 C 1.38716 * 119.93991 * 0.61498 * 7 6 5 9 9 O 1.35896 * 120.05263 * 179.68049 * 8 7 6 10 10 C 1.42905 * 117.00039 * 359.72624 * 9 8 7 11 11 C 1.52999 * 109.46728 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47317 * 55.00691 * 11 10 9 13 13 N 1.46901 * 109.47509 * 295.00205 * 11 10 9 14 14 C 1.50710 * 109.46737 * 175.00089 * 11 10 9 15 15 H 1.07992 * 119.99708 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99709 * 179.97438 * 14 11 10 17 17 N 1.31520 * 120.00162 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99918 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46941 * 59.99911 * 18 16 14 20 20 H 1.48494 * 109.47350 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46755 * 300.00286 * 18 16 14 22 22 C 1.38128 * 119.97066 * 119.99748 * 4 2 1 23 23 H 1.08993 * 109.47355 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46949 * 300.00348 * 1 2 3 25 25 H 1.09000 * 109.47100 * 59.99672 * 1 2 3 26 26 H 1.08997 * 109.46606 * 240.00278 * 2 1 3 27 27 H 1.09005 * 109.47337 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47432 * 300.00125 * 3 2 1 29 29 H 1.09002 * 109.47523 * 60.00004 * 3 2 1 30 30 H 1.08002 * 119.93980 * 359.97438 * 5 4 2 31 31 H 1.08005 * 119.97076 * 179.97438 * 6 5 4 32 32 H 1.07995 * 120.02564 * 180.29968 * 7 6 5 33 33 H 1.09000 * 109.47187 * 300.00222 * 10 9 8 34 34 H 1.09001 * 109.46558 * 60.00270 * 10 9 8 35 35 H 1.00908 * 110.99656 * 299.99947 * 13 11 10 36 36 H 1.00891 * 110.99713 * 63.95254 * 13 11 10 37 37 H 0.96999 * 119.99643 * 179.97438 * 17 16 14 38 38 H 1.07999 * 120.03054 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6983 -0.2372 2.4862 6 6 2.1580 -0.8863 3.6168 7 6 2.9471 -2.0139 3.4948 8 6 3.2886 -2.4870 2.2363 9 8 4.0700 -3.5921 2.1136 10 6 4.5095 -4.2135 3.3231 11 6 5.3707 -5.4324 2.9864 12 1 6.1878 -5.1303 2.3313 13 7 4.5468 -6.4418 2.3079 14 6 5.9346 -6.0153 4.2566 15 1 5.7017 -5.5619 5.2087 16 6 6.7471 -7.1280 4.2032 17 7 7.0303 -7.6804 3.0437 18 14 7.4455 -7.8510 5.7777 19 1 6.3320 -8.2622 6.6700 20 1 8.2814 -9.0340 5.4510 21 1 8.2787 -6.8309 6.4637 22 6 2.8264 -1.8334 1.1030 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.0780 0.6415 2.5837 31 1 1.8960 -0.5146 4.5965 32 1 3.3020 -2.5235 4.3784 33 1 5.0968 -3.5025 3.9042 34 1 3.6435 -4.5302 3.9042 35 1 3.7818 -6.7384 2.8954 36 1 4.2096 -6.0971 1.4217 37 1 7.6022 -8.4630 3.0062 38 1 3.0876 -2.2022 0.1221 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057499525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:17 Heat of formation + Delta-G solvation = -50.730540 kcal Electronic energy + Delta-G solvation = -17682.467267 eV Core-core repulsion = 14909.557417 eV Total energy + Delta-G solvation = -2772.909850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18142 -39.17029 -36.53443 -35.63922 -33.52201 -31.59693 -30.12590 -29.05915 -27.94518 -27.00063 -24.17325 -23.53652 -22.19506 -20.86057 -18.97662 -18.09739 -17.07565 -16.98298 -16.86424 -16.42801 -15.95007 -15.79564 -15.00998 -14.60753 -14.47165 -14.35955 -14.23477 -13.79859 -13.38416 -13.12540 -12.89064 -12.83947 -12.68564 -12.63320 -12.27956 -12.11448 -11.89954 -11.68424 -11.61807 -11.48908 -11.18746 -10.58395 -9.77656 -9.11467 -8.93787 -8.03571 -6.27967 0.36264 0.50916 1.44256 1.46206 1.53546 2.26356 2.52969 2.80192 3.21555 3.73211 3.87297 4.02023 4.17350 4.18101 4.20926 4.34197 4.37679 4.44467 4.54973 4.59450 4.64655 4.74164 4.85465 5.02320 5.02640 5.05689 5.21935 5.31480 5.36441 5.42661 5.43626 5.52893 5.67092 5.69845 5.90999 6.06172 6.49106 6.61300 7.04943 7.19951 7.46109 9.01513 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.048412 B = 0.003988 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.227130 B = 7018.875408 C = 7321.521790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.038 4.038 5 C -0.157 4.157 6 C -0.078 4.078 7 C -0.231 4.231 8 C 0.110 3.890 9 O -0.335 6.335 10 C 0.050 3.950 11 C 0.232 3.768 12 H 0.006 0.994 13 N -0.820 5.820 14 C -0.561 4.561 15 H 0.059 0.941 16 C 0.034 3.966 17 N -0.880 5.880 18 Si 0.959 3.041 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.270 1.270 22 C -0.173 4.173 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.121 0.879 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.322 0.678 36 H 0.313 0.687 37 H 0.257 0.743 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.108 17.289 -2.823 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.198 4.198 4 C -0.038 4.038 5 C -0.175 4.175 6 C -0.095 4.095 7 C -0.250 4.250 8 C 0.064 3.936 9 O -0.249 6.249 10 C -0.027 4.027 11 C 0.122 3.878 12 H 0.024 0.976 13 N -0.346 5.346 14 C -0.599 4.599 15 H 0.077 0.923 16 C -0.171 4.171 17 N -0.515 5.515 18 Si 0.784 3.216 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.195 1.195 22 C -0.192 4.192 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.139 0.861 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.066 0.934 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.262 16.581 -3.110 20.856 hybrid contribution 0.016 -0.173 1.017 1.031 sum -12.245 16.408 -2.093 20.580 Atomic orbital electron populations 1.21833 0.92940 1.01880 1.03059 1.20204 0.96961 0.96499 0.93939 1.21836 1.00732 0.94114 1.03069 1.19944 0.94396 0.93094 0.96395 1.21138 1.03170 1.02060 0.91115 1.21237 0.94796 0.93259 1.00246 1.21444 1.05928 1.01641 0.96008 1.19509 0.91630 0.87351 0.95080 1.86061 1.63954 1.39674 1.35230 1.23864 0.97895 0.96254 0.84651 1.18865 0.90231 0.84588 0.94113 0.97594 1.58880 1.25881 1.43669 1.06219 1.21080 1.32133 1.14549 0.92182 0.92312 1.25756 0.95639 0.96726 0.98930 1.70259 1.34679 1.20695 1.25848 0.85638 0.78431 0.77794 0.79763 1.19454 1.21071 1.19489 1.20514 1.03520 0.98425 0.96752 0.93461 0.91625 0.90718 0.90609 0.93516 0.90710 0.91608 0.83309 0.83375 0.86058 0.93046 0.92789 0.86638 0.87603 0.93373 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.01 71.98 0.65 -1.36 16 2 C -0.06 -1.02 3.09 -11.54 -0.04 -1.05 16 3 C -0.14 -2.03 9.01 71.98 0.65 -1.38 16 4 C -0.04 -0.91 4.78 -19.88 -0.10 -1.01 16 5 C -0.16 -3.40 8.71 22.28 0.19 -3.21 16 6 C -0.08 -1.89 10.04 22.25 0.22 -1.66 16 7 C -0.23 -7.26 9.04 22.37 0.20 -7.06 16 8 C 0.11 3.90 6.69 22.51 0.15 4.05 16 9 O -0.33 -13.98 9.80 -92.39 -0.91 -14.88 16 10 C 0.05 2.19 4.27 71.98 0.31 2.50 16 11 C 0.23 12.13 2.91 44.17 0.13 12.26 16 12 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 13 N -0.82 -40.92 8.53 -171.79 -1.47 -42.38 16 14 C -0.56 -31.12 8.73 25.60 0.22 -30.90 16 15 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 16 C 0.03 1.90 5.39 84.65 0.46 2.35 16 17 N -0.88 -52.58 12.77 21.45 0.27 -52.31 16 18 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 C -0.17 -5.31 9.61 22.37 0.21 -5.09 16 23 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.83 7.39 -2.39 -0.02 0.81 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 1.37 7.87 -2.39 -0.02 1.36 16 27 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.84 7.38 -2.39 -0.02 0.82 16 30 H 0.15 2.29 7.10 -2.91 -0.02 2.27 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.12 3.85 6.30 -2.91 -0.02 3.83 16 33 H 0.05 2.20 7.67 -2.39 -0.02 2.18 16 34 H 0.05 2.23 7.65 -2.39 -0.02 2.22 16 35 H 0.32 15.15 8.99 -89.69 -0.81 14.35 16 36 H 0.31 14.50 8.75 -89.70 -0.78 13.71 16 37 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.12 3.70 7.94 -2.91 -0.02 3.67 16 Total: -1.00 -64.20 315.09 2.66 -61.54 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.54 Total: 34.01 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 3.27 Total: -31.56 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -1.19 Total: -94.69 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.91 Total: -14.88 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -64.20 2.66 -61.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057499525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.812 kcal (2) G-P(sol) polarization free energy of solvation -64.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds