Wall clock time and date at job start Mon Mar 30 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50705 * 109.47397 * 2 1 4 4 C 1.38255 * 119.91662 * 270.02344 * 3 2 1 5 5 C 1.38276 * 120.18052 * 179.74570 * 4 3 2 6 6 C 1.38508 * 120.01616 * 0.49992 * 5 4 3 7 7 O 1.36014 * 120.07979 * 179.74281 * 6 5 4 8 8 C 1.42906 * 116.99807 * 359.73539 * 7 6 5 9 9 C 1.53006 * 109.46748 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46626 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.46957 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99816 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00340 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00347 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99775 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.46867 * 90.00546 * 15 13 11 17 17 H 1.48501 * 109.47216 * 210.00404 * 15 13 11 18 18 H 1.48499 * 109.47135 * 330.00745 * 15 13 11 19 19 C 1.39313 * 119.84136 * 359.47889 * 6 5 4 20 20 N 1.39959 * 120.08893 * 180.29391 * 19 6 5 21 21 C 1.38213 * 119.92137 * 89.99227 * 3 2 1 22 22 H 1.09007 * 109.46971 * 300.00664 * 1 2 3 23 23 H 1.08999 * 109.46692 * 60.00365 * 1 2 3 24 24 H 1.08993 * 109.46725 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47350 * 239.99430 * 2 1 3 26 26 H 1.08999 * 109.46692 * 119.99634 * 2 1 3 27 27 H 1.08004 * 119.90674 * 0.02562 * 4 3 2 28 28 H 1.08008 * 119.99396 * 180.25153 * 5 4 3 29 29 H 1.09000 * 109.47490 * 59.99654 * 8 7 6 30 30 H 1.09001 * 109.47232 * 299.99008 * 8 7 6 31 31 H 1.08993 * 109.46955 * 299.99993 * 9 8 7 32 32 H 1.09000 * 109.47050 * 59.99822 * 9 8 7 33 33 H 1.08993 * 109.47839 * 299.99931 * 10 9 8 34 34 H 1.09000 * 109.47160 * 60.00369 * 10 9 8 35 35 H 0.96991 * 119.99882 * 179.97438 * 14 13 11 36 36 H 0.97000 * 120.00106 * 0.02562 * 20 19 6 37 37 H 0.97006 * 119.99599 * 179.97438 * 20 19 6 38 38 H 1.08005 * 120.01226 * 0.02794 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2619 2.0711 -1.1983 5 6 2.7179 3.3765 -1.2047 6 6 2.9560 4.0331 -0.0086 7 8 3.4095 5.3154 -0.0134 8 6 3.6243 5.9228 -1.2890 9 6 4.1297 7.3537 -1.0938 10 6 4.3602 8.0038 -2.4595 11 6 4.8586 9.4130 -2.2674 12 1 4.9974 9.8055 -1.2708 13 6 5.1373 10.2012 -3.3637 14 7 5.5727 11.4308 -3.1960 15 14 4.8978 9.5221 -5.0874 16 1 3.5143 9.8087 -5.5444 17 1 5.8673 10.1638 -6.0113 18 1 5.1215 8.0541 -5.0765 19 6 2.7246 3.3788 1.1994 20 7 2.9577 4.0394 2.4110 21 6 2.2622 2.0709 1.1979 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0801 1.5595 -2.1320 28 1 2.8922 3.8830 -2.1426 29 1 2.6869 5.9415 -1.8450 30 1 4.3651 5.3482 -1.8450 31 1 3.3886 7.9281 -0.5380 32 1 5.0669 7.3353 -0.5377 33 1 5.1014 7.4293 -3.0150 34 1 3.4231 8.0222 -3.0160 35 1 5.7691 11.9851 -3.9673 36 1 3.2803 4.9542 2.4105 37 1 2.7958 3.5827 3.2514 38 1 2.0821 1.5606 2.1326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070063344.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:41 Heat of formation + Delta-G solvation = -41.101496 kcal Electronic energy + Delta-G solvation = -17336.504487 eV Core-core repulsion = 14564.012183 eV Total energy + Delta-G solvation = -2772.492304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11899 -37.75245 -35.12653 -34.01801 -32.95013 -31.78890 -29.33396 -28.33241 -27.14961 -24.00364 -23.30982 -21.89841 -20.65746 -20.14555 -17.82994 -17.07353 -16.75047 -16.17742 -15.81596 -14.96736 -14.50934 -14.42047 -14.13751 -13.78950 -13.58848 -13.23397 -12.92548 -12.72231 -12.47462 -12.14374 -11.86595 -11.43553 -11.14705 -11.13543 -11.03688 -10.64045 -10.57816 -10.41218 -10.05566 -9.82524 -9.73117 -9.24755 -8.57394 -8.37105 -7.16964 -6.07410 -4.06300 1.46169 1.64219 3.28522 3.36016 3.38757 3.48420 3.86881 3.94436 4.42023 4.71449 4.81323 5.06241 5.20442 5.22693 5.25872 5.39180 5.45505 5.47308 5.57524 5.61636 5.70180 5.76670 5.87825 5.98264 6.03498 6.15980 6.41243 6.41621 6.47939 6.70978 6.78593 6.87578 7.20338 7.33326 7.34409 7.71684 7.82874 7.85067 8.49972 8.97193 9.54107 11.05948 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.037167 B = 0.003796 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.172261 B = 7375.364770 C = 8014.928865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.079 4.079 4 C -0.138 4.138 5 C -0.163 4.163 6 C 0.061 3.939 7 O -0.321 6.321 8 C 0.062 3.938 9 C -0.100 4.100 10 C -0.010 4.010 11 C -0.521 4.521 12 H 0.073 0.927 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.192 3.808 20 N -0.876 5.876 21 C -0.169 4.169 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.117 0.883 28 H 0.128 0.872 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.264 0.736 36 H 0.405 0.595 37 H 0.394 0.606 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.321 -22.152 7.431 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.080 4.080 4 C -0.158 4.158 5 C -0.182 4.182 6 C 0.012 3.988 7 O -0.235 6.235 8 C -0.013 4.013 9 C -0.137 4.137 10 C -0.047 4.047 11 C -0.559 4.559 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.541 5.541 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C 0.088 3.912 20 N -0.416 5.416 21 C -0.193 4.193 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.135 0.865 28 H 0.146 0.854 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.234 0.766 37 H 0.222 0.778 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.216 -21.859 7.441 24.509 hybrid contribution -0.026 -0.004 -0.915 0.915 sum -8.242 -21.863 6.526 24.259 Atomic orbital electron populations 1.21750 0.95039 1.01283 1.02278 1.20451 0.95912 0.92868 1.02395 1.19440 1.00135 0.95925 0.92490 1.20544 1.03528 0.94428 0.97293 1.21091 1.04144 0.96190 0.96808 1.18541 1.01958 0.85689 0.92628 1.85996 1.80876 1.23398 1.33239 1.23106 0.99916 0.95482 0.82812 1.21499 1.01073 0.90300 1.00872 1.19511 0.96447 0.96776 0.92001 1.21073 1.44163 0.95598 0.95102 0.90863 1.25025 0.94535 0.94681 0.99226 1.69908 1.45552 1.07910 1.30725 0.86773 0.78208 0.79747 0.84527 1.20216 1.21289 1.19017 1.17130 0.97794 0.91591 0.84669 1.42304 1.77273 1.17865 1.04202 1.20195 1.08015 0.92977 0.98088 0.92651 0.92528 0.92752 0.91283 0.91452 0.86480 0.85403 0.92648 0.92630 0.91741 0.91716 0.96380 0.96818 0.92651 0.76624 0.77816 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.90 37.16 0.37 -0.76 16 2 C -0.08 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.08 -0.89 5.13 -104.62 -0.54 -1.42 16 4 C -0.14 -1.68 9.69 -39.56 -0.38 -2.06 16 5 C -0.16 -2.27 9.04 -39.47 -0.36 -2.63 16 6 C 0.06 0.92 6.70 -39.08 -0.26 0.66 16 7 O -0.32 -5.36 9.38 -19.79 -0.19 -5.54 16 8 C 0.06 1.05 4.74 37.16 0.18 1.22 16 9 C -0.10 -2.00 5.52 -26.73 -0.15 -2.15 16 10 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 11 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 12 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 15 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 19 C 0.19 2.55 6.77 -83.56 -0.57 1.99 16 20 N -0.88 -9.66 9.09 32.51 0.30 -9.36 16 21 C -0.17 -1.96 9.54 -39.41 -0.38 -2.33 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.53 8.08 -51.93 -0.42 0.12 16 26 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 28 H 0.13 1.70 6.30 -52.48 -0.33 1.37 16 29 H 0.06 0.90 7.65 -51.93 -0.40 0.50 16 30 H 0.06 0.90 7.68 -51.93 -0.40 0.50 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 34 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.40 4.66 8.19 -40.82 -0.33 4.33 16 37 H 0.39 3.21 8.85 -40.82 -0.36 2.85 16 38 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -31.21 315.65 -7.80 -39.01 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.97 Total: 3.37 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -2.80 Total: -22.07 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 1.07 Total: -36.46 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.19 Total: -5.54 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.21 -7.80 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070063344.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.088 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds