Wall clock time and date at job start Mon Mar 30 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47351 * 2 1 4 4 C 1.52996 * 109.47351 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47036 * 61.24381 * 4 3 2 6 6 C 1.50701 * 109.47064 * 301.24383 * 4 3 2 7 7 H 1.08001 * 119.99899 * 265.65055 * 6 4 3 8 8 C 1.37872 * 119.99895 * 85.64987 * 6 4 3 9 9 N 1.31519 * 119.99655 * 163.37011 * 8 6 4 10 10 Si 1.86796 * 120.00275 * 343.37286 * 8 6 4 11 11 H 1.48504 * 109.46970 * 275.76718 * 10 8 6 12 12 H 1.48498 * 109.47246 * 35.76561 * 10 8 6 13 13 H 1.48505 * 109.47324 * 155.76845 * 10 8 6 14 14 C 1.50697 * 109.47092 * 181.24407 * 4 3 2 15 15 C 1.38262 * 119.94672 * 36.68372 * 14 4 3 16 16 C 1.38148 * 120.05616 * 179.72555 * 15 14 4 17 17 C 1.38731 * 119.94422 * 0.54886 * 16 15 14 18 18 O 1.35893 * 120.05647 * 179.74439 * 17 16 15 19 19 C 1.42905 * 117.00289 * 359.97438 * 18 17 16 20 20 C 1.38738 * 119.88464 * 359.73028 * 17 16 15 21 21 C 1.38139 * 119.94886 * 359.97438 * 20 17 16 22 22 H 1.09002 * 109.47082 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47173 * 299.99796 * 1 2 3 24 24 H 1.09006 * 109.47296 * 59.99787 * 1 2 3 25 25 H 1.08997 * 109.47173 * 240.00204 * 2 1 3 26 26 H 1.08996 * 109.47277 * 120.00096 * 2 1 3 27 27 H 1.09007 * 109.46857 * 59.99922 * 3 2 1 28 28 H 1.09006 * 109.47094 * 300.00336 * 3 2 1 29 29 H 1.00903 * 111.00494 * 55.49013 * 5 4 3 30 30 H 1.00899 * 110.99870 * 179.44519 * 5 4 3 31 31 H 0.97002 * 120.00023 * 179.97438 * 9 8 6 32 32 H 1.08004 * 119.97005 * 0.02562 * 15 14 4 33 33 H 1.07998 * 120.02681 * 180.27164 * 16 15 14 34 34 H 1.08998 * 109.47152 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.46711 * 300.00019 * 19 18 17 36 36 H 1.09002 * 109.47001 * 59.99621 * 19 18 17 37 37 H 1.07999 * 120.02000 * 179.97438 * 20 17 16 38 38 H 1.07998 * 119.97375 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0591 0.7764 -1.2151 6 6 4.0728 0.7054 1.2138 7 1 4.3201 1.2508 2.1126 8 6 4.2172 -0.6653 1.1775 9 7 4.9470 -1.2739 2.0867 10 14 3.3764 -1.6579 -0.1631 11 1 1.9749 -1.9425 0.2369 12 1 3.3820 -0.8831 -1.4300 13 1 4.1039 -2.9371 -0.3620 14 6 4.0723 2.8630 0.0302 15 6 3.3969 3.8180 0.7672 16 6 3.8586 5.1196 0.8017 17 6 4.9945 5.4706 0.0868 18 8 5.4478 6.7514 0.1148 19 6 4.7050 7.6854 0.9011 20 6 5.6672 4.5116 -0.6567 21 6 5.2049 3.2101 -0.6830 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.6762 1.2074 -2.0432 30 1 5.0677 0.7714 -1.2435 31 1 5.0483 -2.2383 2.0614 32 1 2.5103 3.5452 1.3204 33 1 3.3331 5.8643 1.3811 34 1 5.1733 8.6676 0.8371 35 1 3.6833 7.7444 0.5261 36 1 4.6922 7.3563 1.9402 37 1 6.5515 4.7825 -1.2144 38 1 5.7285 2.4631 -1.2612 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084398635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:36 Heat of formation + Delta-G solvation = 32.796302 kcal Electronic energy + Delta-G solvation = -18808.176448 eV Core-core repulsion = 16038.888594 eV Total energy + Delta-G solvation = -2769.287855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.85264 -38.13496 -35.82238 -32.66461 -31.80268 -30.81111 -29.01974 -27.78768 -26.57215 -24.98601 -22.87734 -22.11486 -20.95791 -18.97978 -17.89797 -16.61522 -15.84766 -15.53790 -15.21037 -15.00086 -14.45078 -14.12373 -14.08786 -13.36615 -13.01206 -12.76966 -12.42884 -12.18230 -12.15352 -12.00556 -11.67624 -11.38089 -11.15754 -10.88827 -10.79611 -10.39647 -9.89448 -9.84123 -9.40461 -9.32571 -8.79670 -8.52239 -8.11688 -7.49826 -6.60748 -5.97338 -4.03739 1.82333 1.98875 3.50767 3.60455 3.83226 4.01175 4.29774 4.78466 5.05897 5.18565 5.23195 5.27946 5.35778 5.46485 5.52394 5.65841 5.79442 5.83190 5.88810 5.94820 6.04674 6.13548 6.31041 6.41180 6.54250 6.56715 6.64511 6.74621 6.84392 6.99242 7.06254 7.18718 7.21501 7.29311 7.69586 7.75054 8.07481 8.33714 8.68015 9.02618 9.68738 11.10390 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.029820 B = 0.006906 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.740694 B = 4053.646103 C = 4427.856769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.155 4.155 3 C -0.092 4.092 4 C 0.248 3.752 5 N -0.823 5.823 6 C -0.524 4.524 7 H 0.067 0.933 8 C 0.080 3.920 9 N -0.894 5.894 10 Si 0.865 3.135 11 H -0.298 1.298 12 H -0.152 1.152 13 H -0.342 1.342 14 C -0.088 4.088 15 C -0.081 4.081 16 C -0.206 4.206 17 C 0.096 3.904 18 O -0.325 6.325 19 C 0.031 3.969 20 C -0.149 4.149 21 C -0.091 4.091 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.031 0.969 29 H 0.314 0.686 30 H 0.335 0.665 31 H 0.262 0.738 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.120 0.880 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.950 11.899 -5.913 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.191 4.191 3 C -0.131 4.131 4 C 0.157 3.843 5 N -0.354 5.354 6 C -0.561 4.561 7 H 0.085 0.915 8 C -0.125 4.125 9 N -0.529 5.529 10 Si 0.700 3.300 11 H -0.227 1.227 12 H -0.076 1.076 13 H -0.275 1.275 14 C -0.091 4.091 15 C -0.100 4.100 16 C -0.224 4.224 17 C 0.052 3.948 18 O -0.240 6.240 19 C -0.065 4.065 20 C -0.168 4.168 21 C -0.110 4.110 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.126 0.874 30 H 0.150 0.850 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.069 11.195 -5.642 13.180 hybrid contribution -0.068 0.442 -0.102 0.459 sum -4.138 11.637 -5.744 13.621 Atomic orbital electron populations 1.21696 0.97337 1.00444 1.00585 1.22352 0.94574 0.98511 1.03697 1.21732 0.96570 0.95791 0.98970 1.17883 0.91235 0.84847 0.90367 1.60428 1.13271 1.57486 1.04176 1.20540 1.46831 0.91934 0.96769 0.91489 1.25206 0.93100 0.97970 0.96180 1.70070 1.36005 1.09753 1.37047 0.88638 0.76116 0.75630 0.89582 1.22718 1.07622 1.27534 1.21128 0.94731 0.98113 0.95100 1.20905 0.99696 0.91518 0.97871 1.21160 0.98543 0.98221 1.04514 1.18892 0.94398 0.83657 0.97864 1.86001 1.53075 1.17118 1.67777 1.22937 0.96526 0.91991 0.95006 1.20286 1.01483 0.92165 1.02832 1.20796 0.96116 0.94585 0.99479 0.93740 0.93362 0.93722 0.90775 0.89234 0.92496 0.94998 0.87397 0.84987 0.92924 0.85849 0.86409 0.88864 0.93062 0.92932 0.86153 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.16 -3.20 2.75 -26.73 -0.07 -3.27 16 3 C -0.09 -1.82 3.88 -26.73 -0.10 -1.92 16 4 C 0.25 5.29 0.66 -133.91 -0.09 5.20 16 5 N -0.82 -15.97 3.30 -1.14 0.00 -15.98 16 6 C -0.52 -14.06 8.29 -34.44 -0.29 -14.35 16 7 H 0.07 2.04 8.05 -52.49 -0.42 1.61 16 8 C 0.08 2.24 5.05 -17.82 -0.09 2.15 16 9 N -0.89 -27.41 13.96 55.43 0.77 -26.64 16 10 Si 0.87 21.04 21.04 -169.99 -3.58 17.47 16 11 H -0.30 -7.18 5.37 56.52 0.30 -6.88 16 12 H -0.15 -3.26 4.09 56.35 0.23 -3.03 16 13 H -0.34 -9.11 7.11 56.52 0.40 -8.71 16 14 C -0.09 -1.74 4.77 -104.60 -0.50 -2.24 16 15 C -0.08 -1.50 9.14 -39.61 -0.36 -1.86 16 16 C -0.21 -3.39 9.04 -39.43 -0.36 -3.75 16 17 C 0.10 1.61 6.69 -39.21 -0.26 1.35 16 18 O -0.33 -4.91 10.50 -19.40 -0.20 -5.12 16 19 C 0.03 0.33 9.81 101.05 0.99 1.32 16 20 C -0.15 -2.54 9.99 -39.43 -0.39 -2.93 16 21 C -0.09 -1.66 9.26 -39.60 -0.37 -2.02 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 1.54 3.86 -51.93 -0.20 1.34 16 26 H 0.09 2.15 4.19 -51.93 -0.22 1.93 16 27 H 0.06 1.11 6.46 -51.93 -0.34 0.77 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.31 5.25 8.98 -39.29 -0.35 4.90 16 30 H 0.34 6.45 7.19 -39.29 -0.28 6.16 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 32 H 0.12 2.19 6.35 -52.48 -0.33 1.85 16 33 H 0.12 1.62 6.30 -52.49 -0.33 1.29 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 36 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 37 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.12 2.05 6.25 -52.49 -0.33 1.72 16 LS Contribution 284.63 15.07 4.29 4.29 Total: -1.00 -31.28 284.63 -5.78 -37.06 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -5.54 Total: 13.32 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -1.52 Total: -24.40 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.77 Total: -42.62 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.20 Total: -5.12 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -3.58 Total: 17.47 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.28 -5.78 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084398635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.857 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds