Wall clock time and date at job start Mon Mar 30 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47351 * 2 1 4 4 C 1.52996 * 109.47351 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47036 * 61.24381 * 4 3 2 6 6 C 1.50701 * 109.47064 * 301.24383 * 4 3 2 7 7 H 1.08001 * 119.99899 * 265.65055 * 6 4 3 8 8 C 1.37872 * 119.99895 * 85.64987 * 6 4 3 9 9 N 1.31519 * 119.99655 * 163.37011 * 8 6 4 10 10 Si 1.86796 * 120.00275 * 343.37286 * 8 6 4 11 11 H 1.48504 * 109.46970 * 275.76718 * 10 8 6 12 12 H 1.48498 * 109.47246 * 35.76561 * 10 8 6 13 13 H 1.48505 * 109.47324 * 155.76845 * 10 8 6 14 14 C 1.50697 * 109.47092 * 181.24407 * 4 3 2 15 15 C 1.38262 * 119.94672 * 36.68372 * 14 4 3 16 16 C 1.38148 * 120.05616 * 179.72555 * 15 14 4 17 17 C 1.38731 * 119.94422 * 0.54886 * 16 15 14 18 18 O 1.35893 * 120.05647 * 179.74439 * 17 16 15 19 19 C 1.42905 * 117.00289 * 359.97438 * 18 17 16 20 20 C 1.38738 * 119.88464 * 359.73028 * 17 16 15 21 21 C 1.38139 * 119.94886 * 359.97438 * 20 17 16 22 22 H 1.09002 * 109.47082 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47173 * 299.99796 * 1 2 3 24 24 H 1.09006 * 109.47296 * 59.99787 * 1 2 3 25 25 H 1.08997 * 109.47173 * 240.00204 * 2 1 3 26 26 H 1.08996 * 109.47277 * 120.00096 * 2 1 3 27 27 H 1.09007 * 109.46857 * 59.99922 * 3 2 1 28 28 H 1.09006 * 109.47094 * 300.00336 * 3 2 1 29 29 H 1.00903 * 111.00494 * 55.49013 * 5 4 3 30 30 H 1.00899 * 110.99870 * 179.44519 * 5 4 3 31 31 H 0.97002 * 120.00023 * 179.97438 * 9 8 6 32 32 H 1.08004 * 119.97005 * 0.02562 * 15 14 4 33 33 H 1.07998 * 120.02681 * 180.27164 * 16 15 14 34 34 H 1.08998 * 109.47152 * 179.97438 * 19 18 17 35 35 H 1.08995 * 109.46711 * 300.00019 * 19 18 17 36 36 H 1.09002 * 109.47001 * 59.99621 * 19 18 17 37 37 H 1.07999 * 120.02000 * 179.97438 * 20 17 16 38 38 H 1.07998 * 119.97375 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0591 0.7764 -1.2151 6 6 4.0728 0.7054 1.2138 7 1 4.3201 1.2508 2.1126 8 6 4.2172 -0.6653 1.1775 9 7 4.9470 -1.2739 2.0867 10 14 3.3764 -1.6579 -0.1631 11 1 1.9749 -1.9425 0.2369 12 1 3.3820 -0.8831 -1.4300 13 1 4.1039 -2.9371 -0.3620 14 6 4.0723 2.8630 0.0302 15 6 3.3969 3.8180 0.7672 16 6 3.8586 5.1196 0.8017 17 6 4.9945 5.4706 0.0868 18 8 5.4478 6.7514 0.1148 19 6 4.7050 7.6854 0.9011 20 6 5.6672 4.5116 -0.6567 21 6 5.2049 3.2101 -0.6830 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.6762 1.2074 -2.0432 30 1 5.0677 0.7714 -1.2435 31 1 5.0483 -2.2383 2.0614 32 1 2.5103 3.5452 1.3204 33 1 3.3331 5.8643 1.3811 34 1 5.1733 8.6676 0.8371 35 1 3.6833 7.7444 0.5261 36 1 4.6922 7.3563 1.9402 37 1 6.5515 4.7825 -1.2144 38 1 5.7285 2.4631 -1.2612 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084398635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:35 Heat of formation + Delta-G solvation = 10.347980 kcal Electronic energy + Delta-G solvation = -18809.149881 eV Core-core repulsion = 16038.888594 eV Total energy + Delta-G solvation = -2770.261287 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.15691 -39.54558 -37.26599 -34.32571 -33.77986 -32.14800 -30.40243 -29.14479 -27.80359 -26.89364 -24.38178 -23.47450 -22.38196 -20.66677 -19.11988 -18.58772 -17.11847 -16.82918 -16.66872 -16.57319 -16.02326 -15.76935 -15.48106 -14.68856 -14.47578 -14.21857 -14.06130 -13.82297 -13.53778 -13.42486 -12.98901 -12.84042 -12.52274 -12.44858 -12.21383 -11.81643 -11.74032 -11.39038 -11.22646 -11.04333 -10.70572 -10.09415 -9.86074 -8.88651 -8.29839 -8.16411 -6.25019 0.47722 0.60799 1.64907 1.83123 2.06534 2.44011 2.73869 2.90519 3.23624 3.89773 3.99584 4.03944 4.11986 4.29812 4.35537 4.40383 4.45200 4.51494 4.59529 4.62712 4.73059 4.80791 4.87735 5.00730 5.08207 5.13112 5.20581 5.38647 5.40590 5.42602 5.54258 5.56014 5.71560 5.89658 5.93163 6.17409 6.50995 6.56346 6.81076 7.06133 7.52235 8.94327 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.029820 B = 0.006906 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.740694 B = 4053.646103 C = 4427.856769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.159 4.159 3 C -0.087 4.087 4 C 0.254 3.746 5 N -0.825 5.825 6 C -0.512 4.512 7 H 0.014 0.986 8 C 0.023 3.977 9 N -0.954 5.954 10 Si 0.906 3.094 11 H -0.297 1.297 12 H -0.085 1.085 13 H -0.377 1.377 14 C -0.117 4.117 15 C -0.093 4.093 16 C -0.205 4.205 17 C 0.098 3.902 18 O -0.336 6.336 19 C 0.019 3.981 20 C -0.157 4.157 21 C -0.096 4.096 22 H 0.046 0.954 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.339 0.661 30 H 0.338 0.662 31 H 0.255 0.745 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.122 0.878 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.139 0.861 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 14.353 -8.374 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C -0.125 4.125 4 C 0.162 3.838 5 N -0.358 5.358 6 C -0.550 4.550 7 H 0.032 0.968 8 C -0.174 4.174 9 N -0.593 5.593 10 Si 0.742 3.258 11 H -0.226 1.226 12 H -0.009 1.009 13 H -0.314 1.314 14 C -0.119 4.119 15 C -0.111 4.111 16 C -0.224 4.224 17 C 0.054 3.946 18 O -0.250 6.250 19 C -0.075 4.075 20 C -0.176 4.176 21 C -0.115 4.115 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.063 0.937 32 H 0.141 0.859 33 H 0.163 0.837 34 H 0.140 0.860 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.157 0.843 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.466 13.711 -8.113 16.843 hybrid contribution 0.420 -0.077 0.798 0.905 sum -5.046 13.634 -7.315 16.274 Atomic orbital electron populations 1.21664 0.94480 1.01230 1.02302 1.22251 0.97281 0.98386 1.01629 1.21635 0.94899 0.95642 1.00341 1.17609 0.92327 0.85324 0.88514 1.59962 1.13759 1.57479 1.04599 1.20775 1.45072 0.91719 0.97430 0.96798 1.26132 0.93478 0.99282 0.98514 1.70236 1.39279 1.09510 1.40253 0.88348 0.74334 0.72842 0.90227 1.22572 1.00853 1.31386 1.20992 0.96228 0.97374 0.97304 1.21020 0.99984 0.92334 0.97798 1.21394 0.98577 0.98001 1.04402 1.19063 0.94005 0.84570 0.96996 1.86001 1.53921 1.16659 1.68445 1.23298 0.97334 0.92166 0.94694 1.20541 1.02115 0.91887 1.03042 1.20936 0.95614 0.95478 0.99440 0.93501 0.92861 0.90827 0.90509 0.93550 0.92890 0.91772 0.84677 0.84634 0.93661 0.85859 0.83704 0.86012 0.91752 0.92555 0.84312 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.91 71.98 0.71 -3.62 16 2 C -0.16 -6.20 2.75 30.59 0.08 -6.12 16 3 C -0.09 -3.22 3.88 30.59 0.12 -3.10 16 4 C 0.25 10.54 0.66 2.03 0.00 10.54 16 5 N -0.82 -29.82 3.30 -157.52 -0.52 -30.34 16 6 C -0.51 -28.39 8.29 25.60 0.21 -28.18 16 7 H 0.01 0.88 8.05 -2.91 -0.02 0.86 16 8 C 0.02 1.35 5.05 84.65 0.43 1.78 16 9 N -0.95 -61.96 13.96 21.45 0.30 -61.66 16 10 Si 0.91 43.62 21.04 68.60 1.44 45.07 16 11 H -0.30 -14.08 5.37 99.48 0.53 -13.54 16 12 H -0.08 -3.31 4.09 99.15 0.41 -2.91 16 13 H -0.38 -20.38 7.11 99.48 0.71 -19.68 16 14 C -0.12 -4.45 4.77 -19.85 -0.09 -4.55 16 15 C -0.09 -3.29 9.14 22.25 0.20 -3.09 16 16 C -0.21 -6.29 9.04 22.37 0.20 -6.09 16 17 C 0.10 3.06 6.69 22.51 0.15 3.21 16 18 O -0.34 -9.14 10.50 -92.34 -0.97 -10.11 16 19 C 0.02 0.34 9.81 113.37 1.11 1.46 16 20 C -0.16 -5.01 9.99 22.37 0.22 -4.79 16 21 C -0.10 -3.33 9.26 22.25 0.21 -3.12 16 22 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.08 2.93 3.86 -2.39 -0.01 2.92 16 26 H 0.05 2.22 4.19 -2.39 -0.01 2.21 16 27 H 0.05 1.99 6.46 -2.38 -0.02 1.98 16 28 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.34 9.83 8.98 -89.69 -0.81 9.03 16 30 H 0.34 12.31 7.19 -89.69 -0.65 11.66 16 31 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 32 H 0.12 4.26 6.35 -2.91 -0.02 4.24 16 33 H 0.15 3.53 6.30 -2.91 -0.02 3.51 16 34 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 36 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 37 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.13 4.18 6.25 -2.91 -0.02 4.16 16 Total: -1.00 -72.02 284.63 2.97 -69.05 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.84 Total: 33.66 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 3.56 Total: -45.66 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -0.22 Total: -92.00 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.97 Total: -10.11 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.44 Total: 45.07 kcal Total: -72.02 2.97 -69.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084398635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.395 kcal (2) G-P(sol) polarization free energy of solvation -72.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds