Wall clock time and date at job start Mon Mar 30 2020 05:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35907 * 116.99728 * 2 1 4 4 C 1.38749 * 120.05472 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94103 * 179.74887 * 4 3 2 6 6 C 1.38292 * 120.05501 * 0.54890 * 5 4 3 7 7 C 1.50698 * 119.94180 * 179.72180 * 6 5 4 8 8 H 1.09001 * 109.47122 * 159.73042 * 7 6 5 9 9 N 1.46906 * 109.47167 * 39.72830 * 7 6 5 10 10 C 1.50697 * 109.47576 * 279.72697 * 7 6 5 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 7 6 12 12 C 1.37876 * 120.00428 * 180.02562 * 10 7 6 13 13 N 1.31510 * 119.99600 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 120.00227 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.46909 * 90.00072 * 14 12 10 16 16 H 1.48503 * 109.46868 * 209.99959 * 14 12 10 17 17 H 1.48495 * 109.46964 * 330.00013 * 14 12 10 18 18 C 1.38238 * 120.10927 * 359.45330 * 6 5 4 19 19 C 1.38164 * 120.05624 * 0.27037 * 18 6 5 20 20 C 1.50708 * 120.02307 * 180.02562 * 19 18 6 21 21 C 1.52996 * 109.47000 * 299.99715 * 20 19 18 22 22 C 1.53000 * 109.46979 * 60.00191 * 20 19 18 23 23 H 1.09003 * 109.47442 * 300.00271 * 1 2 3 24 24 H 1.08998 * 109.47116 * 59.99956 * 1 2 3 25 25 H 1.09001 * 109.47144 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.03164 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.97159 * 180.26881 * 5 4 3 28 28 H 1.00896 * 111.00309 * 299.99562 * 9 7 6 29 29 H 1.00902 * 110.99923 * 63.95725 * 9 7 6 30 30 H 0.97006 * 120.00212 * 179.97438 * 13 12 10 31 31 H 1.07999 * 119.96621 * 180.29697 * 18 6 5 32 32 H 1.09005 * 109.46682 * 180.02562 * 20 19 18 33 33 H 1.08997 * 109.46866 * 60.00928 * 21 20 19 34 34 H 1.09005 * 109.46960 * 180.02562 * 21 20 19 35 35 H 1.08993 * 109.47791 * 300.00104 * 21 20 19 36 36 H 1.09001 * 109.46919 * 59.99874 * 22 20 19 37 37 H 1.09006 * 109.46525 * 179.97438 * 22 20 19 38 38 H 1.08991 * 109.47279 * 299.99685 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 0.0047 6 6 3.3018 3.6758 -0.0010 7 6 3.9859 5.0186 -0.0016 8 1 5.0113 4.9042 0.3500 9 7 3.2628 5.9370 0.8883 10 6 3.9942 5.5776 -1.4010 11 1 3.5483 5.0169 -2.2091 12 6 4.5710 6.8050 -1.6497 13 7 5.1144 7.4876 -0.6657 14 14 4.5807 7.4982 -3.3844 15 1 3.3551 8.3085 -3.6004 16 1 5.7794 8.3552 -3.5682 17 1 4.6151 6.3821 -4.3632 18 6 4.0559 2.5172 -0.0005 19 6 3.4310 1.2849 0.0000 20 6 4.2538 0.0223 0.0011 21 6 5.1369 -0.0120 -1.2478 22 6 5.1359 -0.0105 1.2507 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2127 2.3204 -0.0005 27 1 1.3338 4.5114 0.0087 28 1 2.3089 6.0598 0.5833 29 1 3.2984 5.6169 1.8445 30 1 5.5206 8.3510 -0.8407 31 1 5.1343 2.5754 -0.0001 32 1 3.5910 -0.8432 0.0009 33 1 5.7996 0.8533 -1.2480 34 1 5.7317 -0.9255 -1.2472 35 1 4.5085 0.0113 -2.1380 36 1 4.5067 0.0140 2.1404 37 1 5.7307 -0.9240 1.2517 38 1 5.7986 0.8549 1.2505 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084486164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:27 Heat of formation + Delta-G solvation = -26.546452 kcal Electronic energy + Delta-G solvation = -18412.156687 eV Core-core repulsion = 15640.295538 eV Total energy + Delta-G solvation = -2771.861150 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96360 -37.49924 -35.59533 -33.64775 -31.40876 -29.63454 -28.94453 -26.90559 -26.89843 -25.74997 -23.11328 -22.39666 -20.47016 -19.03106 -17.66696 -16.42498 -16.02753 -15.49974 -14.90948 -14.29062 -14.20077 -14.06773 -13.83939 -13.43939 -13.20350 -13.04912 -12.39480 -12.09444 -11.87833 -11.80462 -11.68958 -11.49353 -11.07692 -10.95291 -10.86060 -10.73191 -10.51341 -10.37321 -10.05098 -9.71532 -9.12583 -8.41018 -8.24951 -7.45371 -6.99399 -5.84979 -3.99617 1.89540 2.07904 3.34908 3.41734 3.45277 3.56067 4.32491 4.54028 4.98144 5.07980 5.18065 5.21870 5.38128 5.40625 5.47447 5.50246 5.60949 5.82765 5.83693 5.93666 6.00342 6.07494 6.13485 6.19017 6.24589 6.37470 6.47562 6.51777 6.65608 6.89635 7.07554 7.16315 7.35300 7.63991 7.82449 7.93681 8.23136 8.66705 9.03762 9.18482 9.68861 11.19148 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.006315 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.533425 B = 4433.030437 C = 4799.608284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.096 3.904 4 C -0.205 4.205 5 C -0.089 4.089 6 C -0.101 4.101 7 C 0.256 3.744 8 H 0.045 0.955 9 N -0.810 5.810 10 C -0.529 4.529 11 H 0.053 0.947 12 C 0.083 3.917 13 N -0.848 5.848 14 Si 0.882 3.118 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.080 4.080 19 C -0.108 4.108 20 C -0.047 4.047 21 C -0.142 4.142 22 C -0.141 4.141 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.316 0.684 29 H 0.297 0.703 30 H 0.255 0.745 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 -14.019 2.663 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C 0.052 3.948 4 C -0.224 4.224 5 C -0.108 4.108 6 C -0.104 4.104 7 C 0.147 3.853 8 H 0.063 0.937 9 N -0.335 5.335 10 C -0.568 4.568 11 H 0.071 0.929 12 C -0.123 4.123 13 N -0.482 5.482 14 Si 0.710 3.290 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.099 4.099 19 C -0.109 4.109 20 C -0.065 4.065 21 C -0.200 4.200 22 C -0.198 4.198 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.110 0.890 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.141 0.859 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.827 -13.460 2.496 14.516 hybrid contribution -1.054 -0.156 -0.864 1.372 sum -5.881 -13.616 1.632 14.922 Atomic orbital electron populations 1.22915 0.79497 1.02972 1.01045 1.85981 1.20386 1.27538 1.89744 1.18641 0.91708 0.83623 1.00816 1.21080 0.99022 0.92640 1.09611 1.20757 0.94810 0.96241 0.98964 1.21674 0.93765 0.99124 0.95793 1.18140 0.92563 0.81180 0.93432 0.93729 1.59217 1.18236 1.53334 1.02755 1.20849 1.39956 1.04065 0.91883 0.92919 1.24947 0.94617 0.96748 0.96000 1.70104 1.35361 1.12517 1.30267 0.86780 0.77452 0.79083 0.85674 1.20763 1.21279 1.20040 1.20769 0.99752 0.90444 0.98919 1.19131 0.89995 0.95459 1.06318 1.19890 0.95959 0.95354 0.95344 1.21847 0.99357 1.01490 0.97266 1.21840 0.99299 1.01487 0.97222 0.93168 0.93090 0.88984 0.86593 0.86390 0.87139 0.89239 0.93490 0.85937 0.90408 0.92178 0.92998 0.92810 0.92931 0.92945 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -4.86 9.26 -19.45 -0.18 -5.04 16 3 C 0.10 1.64 6.66 -39.22 -0.26 1.38 16 4 C -0.20 -3.49 9.04 -39.43 -0.36 -3.84 16 5 C -0.09 -1.71 9.28 -39.60 -0.37 -2.08 16 6 C -0.10 -2.13 4.89 -104.60 -0.51 -2.64 16 7 C 0.26 6.30 2.85 -70.02 -0.20 6.11 16 8 H 0.04 1.20 8.00 -51.93 -0.42 0.79 16 9 N -0.81 -18.90 8.36 -6.65 -0.06 -18.96 16 10 C -0.53 -14.51 8.70 -34.44 -0.30 -14.81 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.08 2.33 5.39 -17.82 -0.10 2.23 16 13 N -0.85 -24.67 12.77 55.43 0.71 -23.96 16 14 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.08 -1.54 8.33 -39.61 -0.33 -1.87 16 19 C -0.11 -1.88 4.79 -104.47 -0.50 -2.38 16 20 C -0.05 -0.68 3.06 -91.77 -0.28 -0.97 16 21 C -0.14 -1.95 9.01 37.16 0.33 -1.61 16 22 C -0.14 -1.83 9.01 37.16 0.33 -1.50 16 23 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 24 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.12 1.66 6.30 -52.49 -0.33 1.33 16 27 H 0.12 2.20 6.65 -52.49 -0.35 1.85 16 28 H 0.32 7.02 7.33 -39.29 -0.29 6.73 16 29 H 0.30 6.25 9.06 -39.29 -0.36 5.89 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.12 2.30 7.08 -52.49 -0.37 1.93 16 32 H 0.08 1.13 6.99 -51.93 -0.36 0.76 16 33 H 0.06 0.86 7.39 -51.93 -0.38 0.47 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.78 7.39 -51.93 -0.38 0.40 16 LS Contribution 310.35 15.07 4.68 4.68 Total: -1.00 -30.10 310.35 -7.11 -37.21 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.69 Total: 10.33 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -1.54 Total: -20.65 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.65 Total: -42.93 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.18 Total: -5.04 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.10 -7.11 -37.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084486164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.660 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds