Wall clock time and date at job start Mon Mar 30 2020 05:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35907 * 116.99728 * 2 1 4 4 C 1.38749 * 120.05472 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94103 * 179.74887 * 4 3 2 6 6 C 1.38292 * 120.05501 * 0.54890 * 5 4 3 7 7 C 1.50698 * 119.94180 * 179.72180 * 6 5 4 8 8 H 1.09001 * 109.47122 * 159.73042 * 7 6 5 9 9 N 1.46906 * 109.47167 * 39.72830 * 7 6 5 10 10 C 1.50697 * 109.47576 * 279.72697 * 7 6 5 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 7 6 12 12 C 1.37876 * 120.00428 * 180.02562 * 10 7 6 13 13 N 1.31510 * 119.99600 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 120.00227 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.46909 * 90.00072 * 14 12 10 16 16 H 1.48503 * 109.46868 * 209.99959 * 14 12 10 17 17 H 1.48495 * 109.46964 * 330.00013 * 14 12 10 18 18 C 1.38238 * 120.10927 * 359.45330 * 6 5 4 19 19 C 1.38164 * 120.05624 * 0.27037 * 18 6 5 20 20 C 1.50708 * 120.02307 * 180.02562 * 19 18 6 21 21 C 1.52996 * 109.47000 * 299.99715 * 20 19 18 22 22 C 1.53000 * 109.46979 * 60.00191 * 20 19 18 23 23 H 1.09003 * 109.47442 * 300.00271 * 1 2 3 24 24 H 1.08998 * 109.47116 * 59.99956 * 1 2 3 25 25 H 1.09001 * 109.47144 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.03164 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.97159 * 180.26881 * 5 4 3 28 28 H 1.00896 * 111.00309 * 299.99562 * 9 7 6 29 29 H 1.00902 * 110.99923 * 63.95725 * 9 7 6 30 30 H 0.97006 * 120.00212 * 179.97438 * 13 12 10 31 31 H 1.07999 * 119.96621 * 180.29697 * 18 6 5 32 32 H 1.09005 * 109.46682 * 180.02562 * 20 19 18 33 33 H 1.08997 * 109.46866 * 60.00928 * 21 20 19 34 34 H 1.09005 * 109.46960 * 180.02562 * 21 20 19 35 35 H 1.08993 * 109.47791 * 300.00104 * 21 20 19 36 36 H 1.09001 * 109.46919 * 59.99874 * 22 20 19 37 37 H 1.09006 * 109.46525 * 179.97438 * 22 20 19 38 38 H 1.08991 * 109.47279 * 299.99685 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 0.0047 6 6 3.3018 3.6758 -0.0010 7 6 3.9859 5.0186 -0.0016 8 1 5.0113 4.9042 0.3500 9 7 3.2628 5.9370 0.8883 10 6 3.9942 5.5776 -1.4010 11 1 3.5483 5.0169 -2.2091 12 6 4.5710 6.8050 -1.6497 13 7 5.1144 7.4876 -0.6657 14 14 4.5807 7.4982 -3.3844 15 1 3.3551 8.3085 -3.6004 16 1 5.7794 8.3552 -3.5682 17 1 4.6151 6.3821 -4.3632 18 6 4.0559 2.5172 -0.0005 19 6 3.4310 1.2849 0.0000 20 6 4.2538 0.0223 0.0011 21 6 5.1369 -0.0120 -1.2478 22 6 5.1359 -0.0105 1.2507 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2127 2.3204 -0.0005 27 1 1.3338 4.5114 0.0087 28 1 2.3089 6.0598 0.5833 29 1 3.2984 5.6169 1.8445 30 1 5.5206 8.3510 -0.8407 31 1 5.1343 2.5754 -0.0001 32 1 3.5910 -0.8432 0.0009 33 1 5.7996 0.8533 -1.2480 34 1 5.7317 -0.9255 -1.2472 35 1 4.5085 0.0113 -2.1380 36 1 4.5067 0.0140 2.1404 37 1 5.7307 -0.9240 1.2517 38 1 5.7986 0.8549 1.2505 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084486164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:27 Heat of formation + Delta-G solvation = -45.304976 kcal Electronic energy + Delta-G solvation = -18412.970118 eV Core-core repulsion = 15640.295538 eV Total energy + Delta-G solvation = -2772.674580 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27827 -38.83191 -36.99791 -35.32805 -33.38902 -31.04093 -30.30233 -28.20035 -27.95943 -27.57901 -24.56433 -23.99156 -21.90459 -20.45349 -18.92807 -18.43087 -17.37804 -16.73088 -16.56993 -16.03770 -15.79194 -15.34559 -15.19794 -14.73697 -14.55798 -14.30363 -14.12309 -13.46663 -13.33559 -13.16677 -12.91800 -12.83595 -12.67730 -12.53976 -12.47183 -12.03354 -12.01031 -11.72367 -11.46118 -11.36599 -11.08152 -10.54659 -9.66385 -9.04764 -8.69166 -7.96754 -6.18578 0.47441 0.62720 1.41997 1.43096 1.52705 2.45181 2.46288 2.91615 3.26117 3.76032 3.90088 4.11735 4.23992 4.35969 4.39059 4.42499 4.44563 4.50940 4.60029 4.65339 4.73904 4.82636 4.85020 4.94435 5.01009 5.09331 5.21141 5.34557 5.37851 5.40600 5.50104 5.68333 5.76897 5.92730 5.96518 6.20881 6.55366 6.67427 7.12058 7.28228 7.53690 9.05941 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.006315 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.533425 B = 4433.030437 C = 4799.608284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.328 6.328 3 C 0.101 3.899 4 C -0.201 4.201 5 C -0.097 4.097 6 C -0.127 4.127 7 C 0.263 3.737 8 H 0.008 0.992 9 N -0.819 5.819 10 C -0.540 4.540 11 H 0.042 0.958 12 C 0.036 3.964 13 N -0.880 5.880 14 Si 0.945 3.055 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.273 1.273 18 C -0.089 4.089 19 C -0.112 4.112 20 C -0.045 4.045 21 C -0.140 4.140 22 C -0.138 4.138 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.122 0.878 26 H 0.147 0.853 27 H 0.118 0.882 28 H 0.323 0.677 29 H 0.310 0.690 30 H 0.255 0.745 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 -15.866 2.223 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.056 3.944 4 C -0.219 4.219 5 C -0.116 4.116 6 C -0.129 4.129 7 C 0.154 3.846 8 H 0.026 0.974 9 N -0.346 5.346 10 C -0.579 4.579 11 H 0.060 0.940 12 C -0.168 4.168 13 N -0.516 5.516 14 Si 0.771 3.229 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.064 4.064 21 C -0.197 4.197 22 C -0.195 4.195 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.140 0.860 26 H 0.165 0.835 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.121 0.879 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.153 -15.324 2.055 16.641 hybrid contribution -0.726 0.280 -0.691 1.041 sum -6.880 -15.043 1.364 16.598 Atomic orbital electron populations 1.23286 0.77025 1.05362 1.01811 1.85986 1.22869 1.26173 1.89221 1.18777 0.91806 0.84542 0.99292 1.21328 1.00605 0.91625 1.08340 1.20777 0.93942 0.97384 0.99449 1.21316 0.94779 0.97799 0.99043 1.17763 0.91362 0.83364 0.92150 0.97385 1.59022 1.18511 1.53669 1.03415 1.21126 1.39513 1.04168 0.93103 0.93963 1.25659 0.94360 0.97142 0.99613 1.70225 1.36371 1.12822 1.32190 0.85790 0.77586 0.78301 0.81219 1.20190 1.20818 1.19810 1.20730 0.99477 0.90971 0.99613 1.19405 0.90892 0.95743 1.05210 1.19954 0.96071 0.93976 0.96376 1.21829 0.99145 1.02259 0.96490 1.21812 0.99086 1.02295 0.96310 0.92145 0.92477 0.85968 0.83546 0.86360 0.86457 0.87880 0.93566 0.86641 0.89741 0.93451 0.90392 0.93611 0.93137 0.90504 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -8.92 9.26 -92.50 -0.86 -9.77 16 3 C 0.10 3.25 6.66 22.50 0.15 3.40 16 4 C -0.20 -6.45 9.04 22.36 0.20 -6.25 16 5 C -0.10 -3.70 9.28 22.25 0.21 -3.49 16 6 C -0.13 -5.47 4.89 -19.85 -0.10 -5.57 16 7 C 0.26 13.45 2.85 43.42 0.12 13.57 16 8 H 0.01 0.47 8.00 -2.39 -0.02 0.45 16 9 N -0.82 -39.24 8.36 -174.95 -1.46 -40.71 16 10 C -0.54 -30.41 8.70 25.60 0.22 -30.19 16 11 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 12 C 0.04 2.02 5.39 84.66 0.46 2.48 16 13 N -0.88 -52.29 12.77 21.45 0.27 -52.02 16 14 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 18 C -0.09 -3.51 8.33 22.25 0.19 -3.32 16 19 C -0.11 -3.79 4.79 -19.77 -0.09 -3.88 16 20 C -0.05 -1.25 3.06 -11.54 -0.04 -1.28 16 21 C -0.14 -3.64 9.01 71.98 0.65 -2.99 16 22 C -0.14 -3.37 9.01 71.98 0.65 -2.72 16 23 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 24 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 25 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.15 3.72 6.30 -2.91 -0.02 3.70 16 27 H 0.12 4.40 6.65 -2.91 -0.02 4.38 16 28 H 0.32 14.57 7.33 -89.70 -0.66 13.92 16 29 H 0.31 13.36 9.06 -89.69 -0.81 12.55 16 30 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 31 H 0.12 4.56 7.08 -2.91 -0.02 4.54 16 32 H 0.08 2.23 6.99 -2.38 -0.02 2.21 16 33 H 0.05 1.34 7.39 -2.39 -0.02 1.32 16 34 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.05 1.27 7.39 -2.39 -0.02 1.26 16 Total: -1.00 -64.98 310.35 3.30 -61.68 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: -0.41 Total: 33.05 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 3.73 Total: -38.78 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -1.19 Total: -92.73 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.86 Total: -9.77 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -64.98 3.30 -61.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084486164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.374 kcal (2) G-P(sol) polarization free energy of solvation -64.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds