Wall clock time and date at job start Mon Mar 30 2020 06:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47044 * 2 1 4 4 H 1.09002 * 109.47732 * 54.38490 * 3 2 1 5 5 N 1.46897 * 109.47317 * 294.37938 * 3 2 1 6 6 C 1.46904 * 111.00093 * 151.81411 * 5 3 2 7 7 H 1.08997 * 109.47233 * 327.76836 * 6 5 3 8 8 C 1.53000 * 109.46764 * 87.76601 * 6 5 3 9 9 C 1.50695 * 109.47201 * 207.76149 * 6 5 3 10 10 H 1.08005 * 119.99745 * 0.02562 * 9 6 5 11 11 C 1.37879 * 120.00152 * 179.97438 * 9 6 5 12 12 N 1.31505 * 119.99750 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 120.00009 * 180.02562 * 11 9 6 14 14 H 1.48491 * 109.47120 * 90.00179 * 13 11 9 15 15 H 1.48504 * 109.47068 * 210.00322 * 13 11 9 16 16 H 1.48508 * 109.46949 * 330.00025 * 13 11 9 17 17 C 1.50706 * 109.47154 * 174.38059 * 3 2 1 18 18 C 1.38166 * 120.02944 * 91.69269 * 17 3 2 19 19 C 1.38237 * 120.05698 * 180.02562 * 18 17 3 20 20 C 1.38288 * 120.11616 * 359.97438 * 19 18 17 21 21 C 1.38128 * 120.05155 * 0.03039 * 20 19 18 22 22 C 1.38715 * 120.02911 * 271.71960 * 17 3 2 23 23 O 1.35902 * 120.05335 * 359.97438 * 22 17 3 24 24 H 1.09003 * 109.46950 * 305.11269 * 1 2 3 25 25 H 1.09004 * 109.47000 * 65.10688 * 1 2 3 26 26 H 1.08997 * 109.47575 * 185.10970 * 1 2 3 27 27 H 1.08996 * 109.46865 * 239.99517 * 2 1 3 28 28 H 1.09005 * 109.46579 * 119.99566 * 2 1 3 29 29 H 1.00901 * 111.00300 * 275.77282 * 5 3 2 30 30 H 1.09005 * 109.47397 * 60.00051 * 8 6 5 31 31 H 1.09003 * 109.46771 * 180.02562 * 8 6 5 32 32 H 1.08997 * 109.47229 * 299.99554 * 8 6 5 33 33 H 0.97004 * 120.00219 * 179.97438 * 12 11 9 34 34 H 1.08001 * 119.96962 * 0.02563 * 18 17 3 35 35 H 1.08008 * 119.94320 * 180.02562 * 19 18 17 36 36 H 1.07994 * 119.97726 * 179.74673 * 20 19 18 37 37 H 1.07999 * 120.02773 * 179.97438 * 21 20 19 38 38 H 0.96700 * 113.99819 * 90.00497 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5969 1.9846 0.8354 5 7 1.6642 2.0947 -1.2614 6 6 1.5100 3.5442 -1.0791 7 1 1.1452 3.7469 -0.0722 8 6 2.8629 4.2301 -1.2791 9 6 0.5238 4.0752 -2.0872 10 1 0.0578 3.4030 -2.7926 11 6 0.2155 5.4189 -2.1085 12 7 0.7825 6.2372 -1.2493 13 14 -1.0076 6.0769 -3.3577 14 1 -2.3765 6.0259 -2.7845 15 1 -0.6639 7.4819 -3.6943 16 1 -0.9546 5.2461 -4.5875 17 6 3.5406 1.4447 0.1391 18 6 4.3395 1.4421 -0.9881 19 6 5.7161 1.4437 -0.8612 20 6 6.2971 1.4484 0.3937 21 6 5.5028 1.4510 1.5238 22 6 4.1210 1.4490 1.3990 23 8 3.3373 1.4516 2.5094 24 1 -0.3633 0.5911 0.8407 25 1 -0.3633 0.4326 -0.9322 26 1 -0.3634 -1.0235 0.0915 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.3345 1.8909 -1.9876 30 1 3.2278 4.0273 -2.2861 31 1 2.7486 5.3056 -1.1434 32 1 3.5763 3.8461 -0.5500 33 1 0.5660 7.1826 -1.2644 34 1 3.8882 1.4388 -1.9693 35 1 6.3388 1.4420 -1.7436 36 1 7.3727 1.4455 0.4903 37 1 5.9570 1.4543 2.5036 38 1 3.1113 0.5689 2.8333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111417792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:31 Heat of formation + Delta-G solvation = -21.985907 kcal Electronic energy + Delta-G solvation = -18781.239480 eV Core-core repulsion = 16009.576090 eV Total energy + Delta-G solvation = -2771.663390 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.94362 -36.85451 -36.18962 -33.68291 -31.54461 -30.48703 -29.55870 -27.68371 -25.06364 -24.79764 -22.49104 -21.86506 -20.30098 -19.81610 -18.14095 -16.45184 -15.98009 -15.60473 -15.01135 -14.67490 -14.28893 -13.91778 -13.73619 -13.52593 -12.74795 -12.34329 -12.32299 -11.99688 -11.78333 -11.64811 -11.36627 -10.98429 -10.94328 -10.76618 -10.72902 -10.47413 -10.30106 -10.19654 -9.93958 -9.78483 -8.98564 -8.57051 -8.29412 -8.24829 -7.25899 -5.91999 -3.95719 1.45678 1.54810 3.35824 3.41872 3.45649 3.84123 4.40998 4.47988 4.97310 5.06500 5.17159 5.21752 5.38917 5.52397 5.60104 5.64015 5.78040 5.96869 6.02145 6.13155 6.23092 6.36711 6.38889 6.53843 6.59320 6.66927 6.80448 6.82965 6.90398 6.99601 7.02004 7.20310 7.44999 7.81900 7.84668 7.94385 8.34426 8.58067 8.66735 9.11309 9.69229 11.14540 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023853 B = 0.006799 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.579314 B = 4117.136724 C = 4634.319694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 C 0.123 3.877 4 H 0.088 0.912 5 N -0.672 5.672 6 C 0.214 3.786 7 H 0.032 0.968 8 C -0.166 4.166 9 C -0.494 4.494 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.896 3.104 14 H -0.282 1.282 15 H -0.289 1.289 16 H -0.275 1.275 17 C -0.112 4.112 18 C -0.098 4.098 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.148 4.148 22 C 0.103 3.897 23 O -0.493 6.493 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.324 0.676 30 H 0.024 0.976 31 H 0.085 0.915 32 H 0.011 0.989 33 H 0.259 0.741 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.959 -12.194 4.105 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.137 4.137 3 C 0.012 3.988 4 H 0.106 0.894 5 N -0.302 5.302 6 C 0.106 3.894 7 H 0.050 0.950 8 C -0.225 4.225 9 C -0.533 4.533 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.724 3.276 14 H -0.208 1.208 15 H -0.215 1.215 16 H -0.200 1.200 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.145 4.145 20 C -0.136 4.136 21 C -0.167 4.167 22 C 0.058 3.942 23 O -0.302 6.302 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.144 0.856 30 H 0.043 0.957 31 H 0.103 0.897 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 7.286 -11.503 4.149 14.234 hybrid contribution 0.434 0.413 -0.440 0.743 sum 7.720 -11.091 3.709 14.013 Atomic orbital electron populations 1.21622 0.95093 0.99646 1.03358 1.21417 0.96733 0.95324 1.00218 1.20691 0.86880 0.95580 0.95637 0.89416 1.61003 1.50686 1.14103 1.04409 1.19223 0.92529 0.80326 0.97320 0.95033 1.22446 0.97773 1.05381 0.96946 1.21170 1.23216 0.92424 1.16519 0.92018 1.24950 0.96517 0.97011 0.96065 1.69899 1.43317 1.03888 1.36480 0.86541 0.81468 0.77900 0.81698 1.20821 1.21502 1.19994 1.21284 0.98979 0.98779 0.92405 1.20950 0.93333 0.98856 0.98501 1.21090 0.94869 1.01145 0.97349 1.20911 0.99349 1.01073 0.92259 1.21342 0.93048 1.03132 0.99128 1.18320 0.88862 1.01217 0.85769 1.84850 1.69918 1.32867 1.42587 0.93268 0.90907 0.94278 0.92474 0.93523 0.85553 0.95728 0.89683 0.97031 0.93159 0.85455 0.86159 0.86207 0.86007 0.76202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.75 37.16 0.36 -1.75 16 2 C -0.10 -1.46 5.59 -26.73 -0.15 -1.61 16 3 C 0.12 2.21 1.99 -68.87 -0.14 2.08 16 4 H 0.09 1.80 6.78 -51.93 -0.35 1.44 16 5 N -0.67 -14.00 5.58 -102.17 -0.57 -14.57 16 6 C 0.21 5.42 2.59 -68.86 -0.18 5.24 16 7 H 0.03 0.90 7.34 -51.93 -0.38 0.52 16 8 C -0.17 -4.12 8.15 37.16 0.30 -3.82 16 9 C -0.49 -13.78 8.84 -34.44 -0.30 -14.09 16 10 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 11 C 0.05 1.55 5.30 -17.82 -0.09 1.46 16 12 N -0.90 -26.22 11.32 55.43 0.63 -25.60 16 13 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 C -0.11 -1.87 3.66 -104.47 -0.38 -2.25 16 18 C -0.10 -1.54 7.74 -39.61 -0.31 -1.85 16 19 C -0.13 -1.74 10.04 -39.56 -0.40 -2.14 16 20 C -0.12 -1.53 10.04 -39.60 -0.40 -1.92 16 21 C -0.15 -2.05 9.99 -39.43 -0.39 -2.45 16 22 C 0.10 1.62 6.68 -39.22 -0.26 1.36 16 23 O -0.49 -7.21 12.58 -19.43 -0.24 -7.46 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.26 7.91 -51.93 -0.41 0.84 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.32 6.41 5.56 -39.29 -0.22 6.20 16 30 H 0.02 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.08 2.36 6.07 -51.93 -0.32 2.05 16 32 H 0.01 0.25 5.99 -51.93 -0.31 -0.06 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 34 H 0.13 1.98 5.95 -52.49 -0.31 1.67 16 35 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.38 3.63 9.06 45.56 0.41 4.05 16 LS Contribution 306.36 15.07 4.62 4.62 Total: -1.00 -30.62 306.36 -7.74 -38.37 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -4.81 Total: 9.62 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -2.34 Total: -21.74 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.06 Total: -40.17 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.24 Total: -7.46 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.62 -7.74 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111417792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.380 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds