Wall clock time and date at job start Mon Mar 30 2020 06:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47044 * 2 1 4 4 H 1.09002 * 109.47732 * 54.38490 * 3 2 1 5 5 N 1.46897 * 109.47317 * 294.37938 * 3 2 1 6 6 C 1.46904 * 111.00093 * 151.81411 * 5 3 2 7 7 H 1.08997 * 109.47233 * 327.76836 * 6 5 3 8 8 C 1.53000 * 109.46764 * 87.76601 * 6 5 3 9 9 C 1.50695 * 109.47201 * 207.76149 * 6 5 3 10 10 H 1.08005 * 119.99745 * 0.02562 * 9 6 5 11 11 C 1.37879 * 120.00152 * 179.97438 * 9 6 5 12 12 N 1.31505 * 119.99750 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 120.00009 * 180.02562 * 11 9 6 14 14 H 1.48491 * 109.47120 * 90.00179 * 13 11 9 15 15 H 1.48504 * 109.47068 * 210.00322 * 13 11 9 16 16 H 1.48508 * 109.46949 * 330.00025 * 13 11 9 17 17 C 1.50706 * 109.47154 * 174.38059 * 3 2 1 18 18 C 1.38166 * 120.02944 * 91.69269 * 17 3 2 19 19 C 1.38237 * 120.05698 * 180.02562 * 18 17 3 20 20 C 1.38288 * 120.11616 * 359.97438 * 19 18 17 21 21 C 1.38128 * 120.05155 * 0.03039 * 20 19 18 22 22 C 1.38715 * 120.02911 * 271.71960 * 17 3 2 23 23 O 1.35902 * 120.05335 * 359.97438 * 22 17 3 24 24 H 1.09003 * 109.46950 * 305.11269 * 1 2 3 25 25 H 1.09004 * 109.47000 * 65.10688 * 1 2 3 26 26 H 1.08997 * 109.47575 * 185.10970 * 1 2 3 27 27 H 1.08996 * 109.46865 * 239.99517 * 2 1 3 28 28 H 1.09005 * 109.46579 * 119.99566 * 2 1 3 29 29 H 1.00901 * 111.00300 * 275.77282 * 5 3 2 30 30 H 1.09005 * 109.47397 * 60.00051 * 8 6 5 31 31 H 1.09003 * 109.46771 * 180.02562 * 8 6 5 32 32 H 1.08997 * 109.47229 * 299.99554 * 8 6 5 33 33 H 0.97004 * 120.00219 * 179.97438 * 12 11 9 34 34 H 1.08001 * 119.96962 * 0.02563 * 18 17 3 35 35 H 1.08008 * 119.94320 * 180.02562 * 19 18 17 36 36 H 1.07994 * 119.97726 * 179.74673 * 20 19 18 37 37 H 1.07999 * 120.02773 * 179.97438 * 21 20 19 38 38 H 0.96700 * 113.99819 * 90.00497 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5969 1.9846 0.8354 5 7 1.6642 2.0947 -1.2614 6 6 1.5100 3.5442 -1.0791 7 1 1.1452 3.7469 -0.0722 8 6 2.8629 4.2301 -1.2791 9 6 0.5238 4.0752 -2.0872 10 1 0.0578 3.4030 -2.7926 11 6 0.2155 5.4189 -2.1085 12 7 0.7825 6.2372 -1.2493 13 14 -1.0076 6.0769 -3.3577 14 1 -2.3765 6.0259 -2.7845 15 1 -0.6639 7.4819 -3.6943 16 1 -0.9546 5.2461 -4.5875 17 6 3.5406 1.4447 0.1391 18 6 4.3395 1.4421 -0.9881 19 6 5.7161 1.4437 -0.8612 20 6 6.2971 1.4484 0.3937 21 6 5.5028 1.4510 1.5238 22 6 4.1210 1.4490 1.3990 23 8 3.3373 1.4516 2.5094 24 1 -0.3633 0.5911 0.8407 25 1 -0.3633 0.4326 -0.9322 26 1 -0.3634 -1.0235 0.0915 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.3345 1.8909 -1.9876 30 1 3.2278 4.0273 -2.2861 31 1 2.7486 5.3056 -1.1434 32 1 3.5763 3.8461 -0.5500 33 1 0.5660 7.1826 -1.2644 34 1 3.8882 1.4388 -1.9693 35 1 6.3388 1.4420 -1.7436 36 1 7.3727 1.4455 0.4903 37 1 5.9570 1.4543 2.5036 38 1 3.1113 0.5689 2.8333 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111417792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:30 Heat of formation + Delta-G solvation = -42.546442 kcal Electronic energy + Delta-G solvation = -18782.131052 eV Core-core repulsion = 16009.576090 eV Total energy + Delta-G solvation = -2772.554961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13989 -38.30233 -37.38625 -35.50795 -33.31593 -31.77933 -30.68235 -29.41080 -27.19068 -26.20894 -23.71644 -23.01913 -22.13957 -21.23661 -19.29891 -18.31604 -17.38337 -16.99851 -16.55309 -16.11945 -15.64597 -15.42926 -14.93904 -14.84544 -14.45028 -14.15849 -13.57002 -13.52833 -13.12344 -13.03756 -12.86307 -12.83424 -12.60684 -12.50703 -12.15215 -12.10921 -12.02171 -11.69780 -11.57253 -11.27068 -10.99800 -10.47499 -9.71749 -9.41575 -8.98330 -8.07627 -6.19826 0.35779 0.42607 1.42521 1.43007 1.53993 2.44214 2.75625 3.19836 3.35915 3.63150 3.76331 3.98987 4.17688 4.34856 4.37919 4.49025 4.61880 4.68974 4.72362 4.86830 4.94828 4.96650 5.04998 5.08368 5.16995 5.20936 5.35705 5.41131 5.46941 5.55758 5.61305 5.62911 5.70259 5.85884 5.97865 6.29587 6.67064 6.85405 6.89227 6.96732 7.50294 8.97474 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023853 B = 0.006799 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.579314 B = 4117.136724 C = 4634.319694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C 0.129 3.871 4 H 0.054 0.946 5 N -0.671 5.671 6 C 0.224 3.776 7 H -0.011 1.011 8 C -0.146 4.146 9 C -0.513 4.513 10 H 0.057 0.943 11 C 0.006 3.994 12 N -0.925 5.925 13 Si 0.961 3.039 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.267 1.267 17 C -0.136 4.136 18 C -0.113 4.113 19 C -0.129 4.129 20 C -0.111 4.111 21 C -0.152 4.152 22 C 0.091 3.909 23 O -0.509 6.509 24 H 0.037 0.963 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.332 0.668 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.021 0.979 33 H 0.259 0.741 34 H 0.122 0.878 35 H 0.146 0.854 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.186 -13.419 3.746 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 C 0.018 3.982 4 H 0.072 0.928 5 N -0.302 5.302 6 C 0.115 3.885 7 H 0.007 0.993 8 C -0.205 4.205 9 C -0.551 4.551 10 H 0.075 0.925 11 C -0.192 4.192 12 N -0.565 5.565 13 Si 0.787 3.213 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.191 1.191 17 C -0.138 4.138 18 C -0.132 4.132 19 C -0.147 4.147 20 C -0.129 4.129 21 C -0.170 4.170 22 C 0.046 3.954 23 O -0.321 6.321 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.152 0.848 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.172 0.828 37 H 0.161 0.839 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 8.515 -12.767 3.797 15.809 hybrid contribution 0.106 0.742 -0.249 0.789 sum 8.621 -12.025 3.548 15.215 Atomic orbital electron populations 1.21583 0.95448 1.00968 1.01399 1.21377 0.96299 0.93382 1.01825 1.20570 0.88385 0.96511 0.92752 0.92789 1.60883 1.51704 1.11356 1.06304 1.18887 0.92196 0.83092 0.94279 0.99279 1.22198 0.97779 1.03061 0.97502 1.21485 1.23943 0.92802 1.16911 0.92494 1.25758 0.98234 0.97287 0.97880 1.70045 1.44483 1.04069 1.37906 0.85509 0.79034 0.77293 0.79471 1.20421 1.21031 1.19104 1.21160 0.97857 1.01207 0.93572 1.21024 0.94467 0.99794 0.97893 1.21414 0.94183 1.00201 0.98890 1.21337 1.01058 0.99012 0.91462 1.21640 0.92288 1.02440 1.00669 1.18515 0.89865 1.01529 0.85502 1.84796 1.70070 1.34901 1.42337 0.94412 0.93537 0.91383 0.91736 0.90847 0.84757 0.95064 0.92816 0.96014 0.93157 0.85982 0.83669 0.82823 0.83891 0.73860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.75 71.98 0.70 -3.39 16 2 C -0.09 -2.63 5.59 30.59 0.17 -2.45 16 3 C 0.13 4.70 1.99 44.17 0.09 4.79 16 4 H 0.05 2.32 6.78 -2.39 -0.02 2.31 16 5 N -0.67 -28.70 5.58 -477.17 -2.66 -31.36 16 6 C 0.22 11.79 2.59 44.17 0.11 11.91 16 7 H -0.01 -0.65 7.34 -2.39 -0.02 -0.67 16 8 C -0.15 -7.40 8.15 71.98 0.59 -6.81 16 9 C -0.51 -29.24 8.84 25.60 0.23 -29.01 16 10 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 11 C 0.01 0.35 5.30 84.66 0.45 0.80 16 12 N -0.92 -55.39 11.32 21.45 0.24 -55.15 16 13 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 C -0.14 -4.47 3.66 -19.77 -0.07 -4.54 16 18 C -0.11 -3.44 7.74 22.25 0.17 -3.27 16 19 C -0.13 -3.21 10.04 22.28 0.22 -2.99 16 20 C -0.11 -2.51 10.04 22.26 0.22 -2.28 16 21 C -0.15 -3.84 9.99 22.37 0.22 -3.62 16 22 C 0.09 2.75 6.68 22.51 0.15 2.90 16 23 O -0.51 -14.61 12.58 -92.45 -1.16 -15.77 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.62 7.91 -2.39 -0.02 1.60 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 28 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.33 13.26 5.56 -89.69 -0.50 12.76 16 30 H 0.03 1.48 8.13 -2.38 -0.02 1.46 16 31 H 0.05 3.06 6.07 -2.39 -0.01 3.05 16 32 H 0.02 1.01 5.99 -2.39 -0.01 1.00 16 33 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 34 H 0.12 3.73 5.95 -2.91 -0.02 3.71 16 35 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 38 H 0.40 7.22 9.06 -74.06 -0.67 6.55 16 Total: -1.00 -67.22 306.36 1.59 -65.63 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.11 Total: 27.54 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 3.26 Total: -37.97 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.42 Total: -86.51 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -1.16 Total: -15.77 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -67.22 1.59 -65.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111417792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.079 kcal (2) G-P(sol) polarization free energy of solvation -67.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds