Wall clock time and date at job start Mon Mar 30 2020 06:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46903 * 2 1 4 4 C 1.52999 * 109.47191 * 119.99591 * 2 1 3 5 5 O 1.42896 * 109.47388 * 175.00201 * 4 2 1 6 6 N 1.46295 * 114.00509 * 180.02562 * 5 4 2 7 7 C 1.46896 * 111.00237 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47567 * 330.00372 * 7 6 5 9 9 C 1.50702 * 109.47020 * 90.00379 * 7 6 5 10 10 H 1.07998 * 119.99867 * 245.05499 * 9 7 6 11 11 C 1.37876 * 120.00019 * 64.78054 * 9 7 6 12 12 N 1.31513 * 120.00182 * 348.52495 * 11 9 7 13 13 Si 1.86804 * 120.00024 * 168.51856 * 11 9 7 14 14 H 1.48502 * 109.46897 * 60.00230 * 13 11 9 15 15 H 1.48495 * 109.47269 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47126 * 300.00280 * 13 11 9 17 17 C 1.50700 * 109.47261 * 210.00132 * 7 6 5 18 18 C 1.38233 * 120.00188 * 151.19219 * 17 7 6 19 19 C 1.38240 * 120.00345 * 179.81236 * 18 17 7 20 20 C 1.38230 * 119.99675 * 0.39383 * 19 18 17 21 21 C 1.38234 * 120.00002 * 359.85989 * 20 19 18 22 22 C 1.38233 * 120.00208 * 331.46683 * 17 7 6 23 23 H 1.09000 * 109.47269 * 299.99435 * 1 2 3 24 24 H 1.08996 * 109.47528 * 60.00274 * 1 2 3 25 25 H 1.09008 * 109.47044 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47328 * 240.00220 * 2 1 3 27 27 H 1.08996 * 109.46805 * 300.00169 * 3 2 1 28 28 H 1.09007 * 109.46962 * 59.99881 * 3 2 1 29 29 H 1.08994 * 109.47094 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46970 * 55.00737 * 4 2 1 31 31 H 1.09003 * 109.47364 * 295.00460 * 4 2 1 32 32 H 1.00902 * 111.00405 * 303.95999 * 6 5 4 33 33 H 0.96995 * 120.00255 * 179.97438 * 12 11 9 34 34 H 1.08012 * 119.99873 * 359.97438 * 18 17 7 35 35 H 1.08001 * 119.99982 * 180.22904 * 19 18 17 36 36 H 1.07999 * 120.00121 * 179.83818 * 20 19 18 37 37 H 1.08003 * 120.00039 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99821 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 7 4.0588 -1.5011 2.3444 7 6 5.5206 -1.5704 2.2177 8 1 5.7924 -1.6128 1.1630 9 6 6.1378 -0.3478 2.8467 10 1 6.6729 0.3627 2.2342 11 6 6.0144 -0.1336 4.2031 12 7 5.1782 -0.8616 4.9104 13 14 7.0351 1.1907 5.0362 14 1 6.7192 2.5110 4.4342 15 1 6.7196 1.2194 6.4869 16 1 8.4781 0.8941 4.8496 17 6 6.0275 -2.8053 2.9171 18 6 7.1859 -3.4205 2.4805 19 6 7.6530 -4.5510 3.1245 20 6 6.9574 -5.0710 4.1999 21 6 5.7962 -4.4588 4.6332 22 6 5.3312 -3.3261 3.9916 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.6765 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6055 -1.7197 1.2952 31 1 1.7516 -0.1582 2.1370 32 1 3.7911 -1.0505 3.2066 33 1 5.0916 -0.7111 5.8647 34 1 7.7274 -3.0164 1.6379 35 1 8.5600 -5.0295 2.7857 36 1 7.3209 -5.9557 4.7014 37 1 5.2524 -4.8653 5.4731 38 1 4.4240 -2.8477 4.3302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134332311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:30 Heat of formation + Delta-G solvation = 10.426688 kcal Electronic energy + Delta-G solvation = -18358.749044 eV Core-core repulsion = 15588.491170 eV Total energy + Delta-G solvation = -2770.257874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.24220 -36.77935 -34.87847 -33.30614 -31.09856 -29.80222 -28.55197 -26.91381 -26.04433 -24.73346 -22.59836 -21.32873 -20.03838 -19.66709 -16.63768 -16.34574 -15.53269 -15.21611 -14.69743 -14.41212 -13.86807 -13.70116 -13.28292 -13.12553 -12.54717 -12.41620 -12.25216 -12.06824 -11.95879 -11.61525 -11.43815 -11.02220 -10.87223 -10.77553 -10.69616 -10.54388 -10.27915 -10.08539 -9.87989 -9.59444 -9.22257 -8.81139 -7.84983 -7.49802 -7.25451 -6.16912 -4.35470 2.47119 2.58582 3.21328 3.26507 3.30479 3.94153 4.27094 4.97160 5.04477 5.16560 5.24203 5.37134 5.78021 5.80798 5.88164 5.89959 5.92574 6.00826 6.06729 6.19259 6.28816 6.35239 6.38427 6.44699 6.62223 6.66748 6.71527 6.80359 6.94281 7.09739 7.25011 7.48907 7.60095 7.72445 7.81135 7.97143 8.17939 8.24527 8.68464 8.80162 9.34522 10.72894 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.007482 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.278545 B = 3741.259186 C = 4767.247597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.143 4.143 4 C 0.072 3.928 5 O -0.270 6.270 6 N -0.499 5.499 7 C 0.228 3.772 8 H 0.052 0.948 9 C -0.542 4.542 10 H 0.061 0.939 11 C 0.074 3.926 12 N -0.878 5.878 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.015 4.015 18 C -0.127 4.127 19 C -0.143 4.143 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.052 4.052 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.356 0.644 33 H 0.270 0.730 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 -1.665 -3.755 6.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.200 4.200 4 C -0.007 4.007 5 O -0.275 6.275 6 N -0.176 5.176 7 C 0.120 3.880 8 H 0.070 0.930 9 C -0.581 4.581 10 H 0.080 0.920 11 C -0.130 4.130 12 N -0.516 5.516 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.200 1.200 17 C -0.016 4.016 18 C -0.145 4.145 19 C -0.162 4.162 20 C -0.167 4.167 21 C -0.165 4.165 22 C -0.071 4.071 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.176 0.824 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.855 -2.213 -4.004 6.671 hybrid contribution 0.889 1.640 1.179 2.207 sum -3.967 -0.573 -2.824 4.903 Atomic orbital electron populations 1.21766 0.94955 1.01665 1.01622 1.21080 0.94907 0.96766 0.98529 1.21774 1.02318 0.95274 1.00656 1.22204 0.84023 0.98148 0.96303 1.90671 1.17738 1.81676 1.37448 1.67059 1.11634 1.42322 0.96589 1.18226 0.83691 0.90908 0.95208 0.92979 1.21592 1.36537 1.06511 0.93445 0.92049 1.25001 0.94712 0.96164 0.97133 1.69645 1.34139 1.39588 1.08189 0.86595 0.81179 0.81766 0.78243 1.20202 1.21054 1.20017 1.19756 0.93498 0.92968 0.95377 1.20808 0.97134 0.96038 1.00568 1.20752 0.99823 0.97799 0.97783 1.20789 0.97018 1.00390 0.98509 1.21064 0.97259 0.97640 1.00534 1.21266 1.00671 0.92036 0.93108 0.92716 0.92592 0.92660 0.90795 0.93471 0.93108 0.91641 0.93967 0.94537 0.82353 0.92004 0.87516 0.87867 0.88142 0.87939 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 2 C -0.09 -1.37 3.16 -90.62 -0.29 -1.66 16 3 C -0.14 -2.10 9.09 37.16 0.34 -1.76 16 4 C 0.07 1.30 5.77 37.16 0.21 1.51 16 5 O -0.27 -6.11 10.76 -13.92 -0.15 -6.26 16 6 N -0.50 -12.02 6.07 -6.65 -0.04 -12.06 16 7 C 0.23 5.72 2.83 -70.02 -0.20 5.52 16 8 H 0.05 1.32 8.00 -51.93 -0.42 0.91 16 9 C -0.54 -14.46 8.82 -34.44 -0.30 -14.76 16 10 H 0.06 1.66 7.84 -52.49 -0.41 1.25 16 11 C 0.07 1.92 5.00 -17.82 -0.09 1.83 16 12 N -0.88 -22.45 8.14 55.43 0.45 -22.00 16 13 Si 0.89 20.68 29.55 -169.99 -5.02 15.66 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 C -0.01 -0.35 4.64 -104.63 -0.49 -0.83 16 18 C -0.13 -2.75 9.71 -39.58 -0.38 -3.14 16 19 C -0.14 -2.79 10.05 -39.58 -0.40 -3.19 16 20 C -0.15 -2.85 10.05 -39.59 -0.40 -3.24 16 21 C -0.15 -3.01 10.05 -39.58 -0.40 -3.41 16 22 C -0.05 -1.20 7.47 -39.58 -0.30 -1.50 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.11 7.82 -51.93 -0.41 0.70 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.36 8.97 6.29 -39.29 -0.25 8.72 16 33 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.11 2.16 8.06 -52.48 -0.42 1.73 16 35 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.10 1.86 8.06 -52.48 -0.42 1.43 16 38 H 0.14 3.38 5.80 -52.49 -0.30 3.08 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -26.78 313.09 -8.38 -35.16 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -5.99 Total: 10.73 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -2.34 Total: -25.94 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.41 Total: -34.05 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.15 Total: -6.26 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.78 -8.38 -35.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134332311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.587 kcal (2) G-P(sol) polarization free energy of solvation -26.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds