Wall clock time and date at job start Mon Mar 30 2020 06:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46903 * 2 1 4 4 C 1.52999 * 109.47191 * 119.99591 * 2 1 3 5 5 O 1.42896 * 109.47388 * 175.00201 * 4 2 1 6 6 N 1.46295 * 114.00509 * 180.02562 * 5 4 2 7 7 C 1.46896 * 111.00237 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47567 * 330.00372 * 7 6 5 9 9 C 1.50702 * 109.47020 * 90.00379 * 7 6 5 10 10 H 1.07998 * 119.99867 * 245.05499 * 9 7 6 11 11 C 1.37876 * 120.00019 * 64.78054 * 9 7 6 12 12 N 1.31513 * 120.00182 * 348.52495 * 11 9 7 13 13 Si 1.86804 * 120.00024 * 168.51856 * 11 9 7 14 14 H 1.48502 * 109.46897 * 60.00230 * 13 11 9 15 15 H 1.48495 * 109.47269 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47126 * 300.00280 * 13 11 9 17 17 C 1.50700 * 109.47261 * 210.00132 * 7 6 5 18 18 C 1.38233 * 120.00188 * 151.19219 * 17 7 6 19 19 C 1.38240 * 120.00345 * 179.81236 * 18 17 7 20 20 C 1.38230 * 119.99675 * 0.39383 * 19 18 17 21 21 C 1.38234 * 120.00002 * 359.85989 * 20 19 18 22 22 C 1.38233 * 120.00208 * 331.46683 * 17 7 6 23 23 H 1.09000 * 109.47269 * 299.99435 * 1 2 3 24 24 H 1.08996 * 109.47528 * 60.00274 * 1 2 3 25 25 H 1.09008 * 109.47044 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47328 * 240.00220 * 2 1 3 27 27 H 1.08996 * 109.46805 * 300.00169 * 3 2 1 28 28 H 1.09007 * 109.46962 * 59.99881 * 3 2 1 29 29 H 1.08994 * 109.47094 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46970 * 55.00737 * 4 2 1 31 31 H 1.09003 * 109.47364 * 295.00460 * 4 2 1 32 32 H 1.00902 * 111.00405 * 303.95999 * 6 5 4 33 33 H 0.96995 * 120.00255 * 179.97438 * 12 11 9 34 34 H 1.08012 * 119.99873 * 359.97438 * 18 17 7 35 35 H 1.08001 * 119.99982 * 180.22904 * 19 18 17 36 36 H 1.07999 * 120.00121 * 179.83818 * 20 19 18 37 37 H 1.08003 * 120.00039 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99821 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 7 4.0588 -1.5011 2.3444 7 6 5.5206 -1.5704 2.2177 8 1 5.7924 -1.6128 1.1630 9 6 6.1378 -0.3478 2.8467 10 1 6.6729 0.3627 2.2342 11 6 6.0144 -0.1336 4.2031 12 7 5.1782 -0.8616 4.9104 13 14 7.0351 1.1907 5.0362 14 1 6.7192 2.5110 4.4342 15 1 6.7196 1.2194 6.4869 16 1 8.4781 0.8941 4.8496 17 6 6.0275 -2.8053 2.9171 18 6 7.1859 -3.4205 2.4805 19 6 7.6530 -4.5510 3.1245 20 6 6.9574 -5.0710 4.1999 21 6 5.7962 -4.4588 4.6332 22 6 5.3312 -3.3261 3.9916 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.6765 1.9563 -0.8900 28 1 1.6765 1.9564 0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6055 -1.7197 1.2952 31 1 1.7516 -0.1582 2.1370 32 1 3.7911 -1.0505 3.2066 33 1 5.0916 -0.7111 5.8647 34 1 7.7274 -3.0164 1.6379 35 1 8.5600 -5.0295 2.7857 36 1 7.3209 -5.9557 4.7014 37 1 5.2524 -4.8653 5.4731 38 1 4.4240 -2.8477 4.3302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134332311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:29 Heat of formation + Delta-G solvation = -2.811242 kcal Electronic energy + Delta-G solvation = -18359.323084 eV Core-core repulsion = 15588.491170 eV Total energy + Delta-G solvation = -2770.831914 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91692 -38.28970 -36.54564 -34.95432 -32.96095 -31.43370 -30.23849 -28.01808 -27.89913 -26.25381 -24.42193 -22.95939 -21.67367 -21.03174 -18.58050 -18.11050 -17.16336 -16.67231 -16.50140 -16.00529 -15.52642 -15.14437 -14.95644 -14.60747 -14.04630 -13.94324 -13.85984 -13.66694 -13.32373 -13.16998 -12.86458 -12.84549 -12.66873 -12.40689 -11.97768 -11.94977 -11.87620 -11.60926 -11.50569 -11.37659 -10.94548 -10.74711 -9.50223 -9.20148 -9.12876 -8.11309 -6.39052 0.82255 0.96144 1.35570 1.38285 1.44658 2.25718 2.34777 3.03157 3.32030 3.95641 4.04929 4.15106 4.33236 4.37869 4.50934 4.55388 4.64401 4.70177 4.76754 4.80985 4.88018 4.95058 5.00228 5.05959 5.09743 5.19952 5.20532 5.42564 5.43798 5.47828 5.58905 5.62671 5.84593 5.89576 6.01618 6.20044 6.38870 6.50313 6.67910 6.90414 7.32271 8.74184 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.007482 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.278545 B = 3741.259186 C = 4767.247597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.140 4.140 4 C 0.065 3.935 5 O -0.289 6.289 6 N -0.497 5.497 7 C 0.229 3.771 8 H 0.032 0.968 9 C -0.571 4.571 10 H 0.044 0.956 11 C 0.044 3.956 12 N -0.880 5.880 13 Si 0.947 3.053 14 H -0.277 1.277 15 H -0.276 1.276 16 H -0.278 1.278 17 C -0.042 4.042 18 C -0.144 4.144 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.151 4.151 22 C -0.071 4.071 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.347 0.653 33 H 0.271 0.729 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.798 -2.544 -3.253 6.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 C -0.198 4.198 4 C -0.013 4.013 5 O -0.296 6.296 6 N -0.172 5.172 7 C 0.121 3.879 8 H 0.050 0.950 9 C -0.609 4.609 10 H 0.062 0.938 11 C -0.160 4.160 12 N -0.516 5.516 13 Si 0.773 3.227 14 H -0.203 1.203 15 H -0.201 1.201 16 H -0.203 1.203 17 C -0.043 4.043 18 C -0.163 4.163 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.169 4.169 22 C -0.090 4.090 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.166 0.834 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.144 0.856 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.884 -3.107 -3.502 6.765 hybrid contribution 0.858 1.860 0.990 2.275 sum -4.025 -1.246 -2.513 4.906 Atomic orbital electron populations 1.21728 0.91992 1.02641 1.02921 1.21125 0.97181 0.96127 0.96441 1.21749 1.00257 0.95679 1.02074 1.22520 0.81766 0.98851 0.98114 1.90651 1.20461 1.81650 1.36820 1.67066 1.11300 1.42188 0.96695 1.18172 0.84088 0.91595 0.94090 0.94950 1.21665 1.37699 1.07422 0.94143 0.93792 1.25511 0.95397 0.97849 0.97257 1.69755 1.33888 1.39797 1.08161 0.85791 0.79596 0.79639 0.77691 1.20294 1.20061 1.20309 1.19784 0.94891 0.93293 0.96371 1.21030 0.96774 0.97177 1.01314 1.21166 1.00722 0.96554 0.97167 1.21242 0.95847 1.01005 0.97868 1.21360 0.98021 0.96715 1.00835 1.21164 1.00501 0.93519 0.93800 0.92348 0.90347 0.91905 0.90962 0.90648 0.93077 0.94794 0.93591 0.95011 0.83449 0.91882 0.87129 0.84268 0.84143 0.85616 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.19 71.98 0.66 -2.22 16 2 C -0.09 -2.57 3.16 -10.79 -0.03 -2.61 16 3 C -0.14 -4.08 9.09 71.98 0.65 -3.42 16 4 C 0.07 2.42 5.77 71.98 0.42 2.84 16 5 O -0.29 -13.68 10.76 -50.15 -0.54 -14.21 16 6 N -0.50 -25.08 6.07 -174.96 -1.06 -26.15 16 7 C 0.23 12.04 2.83 43.42 0.12 12.16 16 8 H 0.03 1.75 8.00 -2.39 -0.02 1.73 16 9 C -0.57 -31.66 8.82 25.60 0.23 -31.43 16 10 H 0.04 2.50 7.84 -2.91 -0.02 2.48 16 11 C 0.04 2.30 5.00 84.65 0.42 2.72 16 12 N -0.88 -45.61 8.14 21.45 0.17 -45.43 16 13 Si 0.95 42.76 29.55 68.60 2.03 44.78 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 15 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 C -0.04 -2.05 4.64 -19.87 -0.09 -2.14 16 18 C -0.14 -6.23 9.71 22.27 0.22 -6.01 16 19 C -0.14 -5.00 10.05 22.27 0.22 -4.78 16 20 C -0.14 -4.93 10.05 22.27 0.22 -4.71 16 21 C -0.15 -5.93 10.05 22.27 0.22 -5.70 16 22 C -0.07 -3.30 7.47 22.27 0.17 -3.13 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.03 1.18 7.82 -2.39 -0.02 1.16 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.35 18.24 6.29 -89.69 -0.56 17.67 16 33 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 34 H 0.11 4.53 8.06 -2.90 -0.02 4.51 16 35 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 36 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 37 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.12 6.00 5.80 -2.91 -0.02 5.99 16 Total: -1.00 -58.87 313.09 4.49 -54.38 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 0.46 Total: 35.06 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 3.43 Total: -48.44 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -0.89 Total: -71.58 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.54 Total: -14.21 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -58.87 4.49 -54.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134332311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.572 kcal (2) G-P(sol) polarization free energy of solvation -58.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds