Wall clock time and date at job start Mon Mar 30 2020 07:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47015 * 2 1 4 4 H 1.09006 * 109.47152 * 54.23045 * 3 2 1 5 5 C 1.50699 * 109.47017 * 174.22915 * 3 2 1 6 6 H 1.08004 * 119.99783 * 114.63382 * 5 3 2 7 7 C 1.37871 * 120.00435 * 294.63192 * 5 3 2 8 8 N 1.31515 * 120.00210 * 166.33866 * 7 5 3 9 9 Si 1.86808 * 119.99772 * 346.33224 * 7 5 3 10 10 H 1.48497 * 109.47012 * 272.61997 * 9 7 5 11 11 H 1.48502 * 109.46848 * 32.62176 * 9 7 5 12 12 H 1.48501 * 109.46797 * 152.61802 * 9 7 5 13 13 N 1.46905 * 109.47479 * 294.23321 * 3 2 1 14 14 C 1.46897 * 110.99740 * 101.51640 * 13 3 2 15 15 H 1.08990 * 109.68706 * 333.59805 * 14 13 3 16 16 C 1.53406 * 109.67731 * 213.08152 * 14 13 3 17 17 C 1.53129 * 109.41236 * 190.68417 * 16 14 13 18 18 C 1.53333 * 109.54130 * 69.98093 * 17 16 14 19 19 C 1.50929 * 108.43693 * 309.97132 * 18 17 16 20 20 O 1.33827 * 127.80806 * 196.71704 * 19 18 17 21 21 C 1.34518 * 109.42150 * 179.91747 * 20 19 18 22 22 C 1.34769 * 108.48370 * 0.05318 * 21 20 19 23 23 C 1.34947 * 123.91178 * 16.69679 * 19 18 17 24 24 H 1.09008 * 109.46815 * 64.22212 * 1 2 3 25 25 H 1.09004 * 109.46986 * 184.21860 * 1 2 3 26 26 H 1.08993 * 109.47270 * 304.22328 * 1 2 3 27 27 H 1.08995 * 109.47303 * 239.99709 * 2 1 3 28 28 H 1.08997 * 109.46865 * 119.99790 * 2 1 3 29 29 H 0.97002 * 119.99814 * 180.02562 * 8 7 5 30 30 H 1.00893 * 110.99710 * 225.47380 * 13 3 2 31 31 H 1.09000 * 109.48234 * 310.65600 * 16 14 13 32 32 H 1.08993 * 109.48333 * 70.69786 * 16 14 13 33 33 H 1.09001 * 109.45889 * 190.00914 * 17 16 14 34 34 H 1.08999 * 109.45534 * 309.97913 * 17 16 14 35 35 H 1.09002 * 109.64145 * 69.65585 * 18 17 16 36 36 H 1.09001 * 109.64514 * 190.07136 * 18 17 16 37 37 H 1.07990 * 125.75984 * 180.02562 * 21 20 19 38 38 H 1.07997 * 126.68654 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5947 1.9853 0.8339 5 6 3.5402 1.4449 0.1429 6 1 4.1590 1.8069 -0.6649 7 6 4.1228 0.9850 1.3047 8 7 5.4131 0.7327 1.3381 9 14 3.0795 0.7204 2.8315 10 1 2.9987 1.9876 3.6015 11 1 1.7138 0.2969 2.4305 12 1 3.6967 -0.3336 3.6761 13 7 1.6673 2.0937 -1.2630 14 6 0.4998 2.9664 -1.0807 15 1 -0.0992 2.6083 -0.2435 16 6 -0.3483 2.9684 -2.3590 17 6 -1.4062 4.0716 -2.2663 18 6 -0.7266 5.4430 -2.3596 19 6 0.4181 5.4764 -1.3765 20 8 1.0701 6.5491 -0.9127 21 6 2.0251 6.1543 -0.0515 22 6 1.9888 4.8102 0.0400 23 6 0.9572 4.3761 -0.8110 24 1 -0.3633 0.4470 -0.9255 25 1 -0.3633 -1.0249 0.0756 26 1 -0.3633 0.5779 0.8497 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.8230 0.4088 2.1555 30 1 2.4457 2.6069 -1.6486 31 1 0.2935 3.1519 -3.2207 32 1 -0.8397 2.0020 -2.4707 33 1 -2.1176 3.9623 -3.0849 34 1 -1.9321 3.9913 -1.3149 35 1 -0.3466 5.5955 -3.3698 36 1 -1.4455 6.2255 -2.1166 37 1 2.7062 6.8046 0.4771 38 1 2.6272 4.1875 0.6490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169210537.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:12 Heat of formation + Delta-G solvation = 3.706871 kcal Electronic energy + Delta-G solvation = -19058.177961 eV Core-core repulsion = 16287.628694 eV Total energy + Delta-G solvation = -2770.549267 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.33433 -37.74738 -35.48697 -32.81455 -32.02449 -30.91752 -29.19783 -28.21674 -26.07283 -22.84804 -22.28069 -21.85585 -20.78799 -19.64930 -18.66575 -17.21352 -16.46271 -15.86284 -15.24886 -14.69375 -14.20406 -13.98117 -13.58855 -13.47447 -12.86318 -12.75722 -12.46147 -12.33571 -12.04542 -11.94758 -11.76215 -11.58011 -11.04639 -10.88206 -10.74466 -10.60667 -10.39242 -10.16141 -9.79907 -9.29678 -9.24921 -9.08713 -8.45878 -7.99192 -7.39580 -6.13227 -4.09147 2.07014 3.04418 3.25974 3.26678 3.35853 3.39510 4.39415 4.84410 4.88769 4.98370 5.17107 5.29312 5.37954 5.41317 5.52871 5.69240 5.77170 5.90501 5.96037 6.05582 6.06796 6.13421 6.18373 6.29461 6.40674 6.52367 6.55690 6.63240 6.75080 6.79590 7.00148 7.07661 7.10516 7.47725 7.52568 7.66554 8.01701 8.40144 8.63156 8.96181 9.52626 10.99631 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023396 B = 0.008303 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.495509 B = 3371.515118 C = 4089.391706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C 0.192 3.808 4 H 0.005 0.995 5 C -0.529 4.529 6 H 0.075 0.925 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.859 3.141 10 H -0.281 1.281 11 H -0.248 1.248 12 H -0.289 1.289 13 N -0.668 5.668 14 C 0.153 3.847 15 H 0.077 0.923 16 C -0.108 4.108 17 C -0.115 4.115 18 C -0.030 4.030 19 C -0.029 4.029 20 O -0.180 6.180 21 C -0.064 4.064 22 C -0.182 4.182 23 C -0.192 4.192 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.263 0.737 30 H 0.343 0.657 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.198 0.802 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 7.643 -4.748 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.083 3.917 4 H 0.022 0.978 5 C -0.566 4.566 6 H 0.093 0.907 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.686 3.314 10 H -0.207 1.207 11 H -0.172 1.172 12 H -0.215 1.215 13 N -0.298 5.298 14 C 0.042 3.958 15 H 0.095 0.905 16 C -0.146 4.146 17 C -0.153 4.153 18 C -0.067 4.067 19 C -0.080 4.080 20 O -0.076 6.076 21 C -0.131 4.131 22 C -0.201 4.201 23 C -0.195 4.195 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.162 0.838 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.215 0.785 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.695 7.297 -4.938 15.453 hybrid contribution 0.364 0.497 1.709 1.816 sum -12.331 7.795 -3.230 14.941 Atomic orbital electron populations 1.21863 0.98705 0.99379 1.00625 1.21908 0.92694 0.99513 1.00905 1.19489 0.95384 0.90632 0.86210 0.97775 1.21238 0.89498 1.43512 1.02401 0.90690 1.24892 0.94676 0.94212 0.98706 1.69970 1.10996 1.44169 1.27763 0.87301 0.82422 0.78103 0.83578 1.20724 1.17217 1.21480 1.60689 1.08025 1.32054 1.28998 1.20224 0.93561 0.85450 0.96523 0.90487 1.21649 0.96555 0.97990 0.98444 1.21605 0.98042 0.93244 1.02436 1.20123 0.92067 0.98842 0.95712 1.22326 0.99138 0.84354 1.02164 1.83823 1.39770 1.35272 1.48783 1.24006 0.95313 0.95976 0.97800 1.21832 1.00908 0.94750 1.02659 1.21197 0.99595 0.97572 1.01172 0.92580 0.94726 0.94536 0.92320 0.93020 0.92689 0.83824 0.91522 0.91101 0.90805 0.91585 0.90086 0.90552 0.78489 0.82405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.75 37.16 0.33 -2.38 16 2 C -0.11 -2.45 4.89 -26.73 -0.13 -2.58 16 3 C 0.19 4.39 1.43 -68.86 -0.10 4.29 16 4 H 0.00 0.11 6.14 -51.93 -0.32 -0.21 16 5 C -0.53 -14.28 9.01 -34.44 -0.31 -14.59 16 6 H 0.08 2.22 7.69 -52.48 -0.40 1.81 16 7 C 0.08 2.19 5.35 -17.82 -0.10 2.09 16 8 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 9 Si 0.86 20.94 25.81 -169.99 -4.39 16.56 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.25 -5.73 5.40 56.52 0.31 -5.42 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 N -0.67 -13.42 5.83 -101.98 -0.59 -14.01 16 14 C 0.15 2.65 1.79 -68.69 -0.12 2.52 16 15 H 0.08 1.40 6.41 -51.93 -0.33 1.07 16 16 C -0.11 -1.50 5.54 -26.45 -0.15 -1.65 16 17 C -0.12 -1.29 5.89 -26.49 -0.16 -1.44 16 18 C -0.03 -0.36 6.30 -27.60 -0.17 -0.53 16 19 C -0.03 -0.45 7.23 -35.36 -0.26 -0.71 16 20 O -0.18 -2.91 10.64 6.38 0.07 -2.84 16 21 C -0.06 -1.02 12.10 29.50 0.36 -0.66 16 22 C -0.18 -3.37 10.53 -39.92 -0.42 -3.79 16 23 C -0.19 -3.39 5.29 -104.93 -0.56 -3.94 16 24 H 0.06 0.96 6.54 -51.92 -0.34 0.62 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.66 8.02 -51.93 -0.42 0.24 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.05 1.20 4.81 -51.93 -0.25 0.95 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.34 7.31 7.46 -39.30 -0.29 7.02 16 31 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 32 H 0.07 0.95 7.55 -51.93 -0.39 0.56 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.20 2.40 8.06 -52.49 -0.42 1.98 16 38 H 0.16 3.27 7.97 -52.49 -0.42 2.85 16 LS Contribution 295.87 15.07 4.46 4.46 Total: -1.00 -29.59 295.87 -7.24 -36.84 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.78 Total: 8.32 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -1.78 Total: -23.37 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.18 Total: -39.96 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: 0.07 Total: -2.84 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.39 Total: 16.56 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.59 -7.24 -36.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169210537.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.543 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds