Wall clock time and date at job start Mon Mar 30 2020 07:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47015 * 2 1 4 4 H 1.09006 * 109.47152 * 54.23045 * 3 2 1 5 5 C 1.50699 * 109.47017 * 174.22915 * 3 2 1 6 6 H 1.08004 * 119.99783 * 114.63382 * 5 3 2 7 7 C 1.37871 * 120.00435 * 294.63192 * 5 3 2 8 8 N 1.31515 * 120.00210 * 166.33866 * 7 5 3 9 9 Si 1.86808 * 119.99772 * 346.33224 * 7 5 3 10 10 H 1.48497 * 109.47012 * 272.61997 * 9 7 5 11 11 H 1.48502 * 109.46848 * 32.62176 * 9 7 5 12 12 H 1.48501 * 109.46797 * 152.61802 * 9 7 5 13 13 N 1.46905 * 109.47479 * 294.23321 * 3 2 1 14 14 C 1.46897 * 110.99740 * 101.51640 * 13 3 2 15 15 H 1.08990 * 109.68706 * 333.59805 * 14 13 3 16 16 C 1.53406 * 109.67731 * 213.08152 * 14 13 3 17 17 C 1.53129 * 109.41236 * 190.68417 * 16 14 13 18 18 C 1.53333 * 109.54130 * 69.98093 * 17 16 14 19 19 C 1.50929 * 108.43693 * 309.97132 * 18 17 16 20 20 O 1.33827 * 127.80806 * 196.71704 * 19 18 17 21 21 C 1.34518 * 109.42150 * 179.91747 * 20 19 18 22 22 C 1.34769 * 108.48370 * 0.05318 * 21 20 19 23 23 C 1.34947 * 123.91178 * 16.69679 * 19 18 17 24 24 H 1.09008 * 109.46815 * 64.22212 * 1 2 3 25 25 H 1.09004 * 109.46986 * 184.21860 * 1 2 3 26 26 H 1.08993 * 109.47270 * 304.22328 * 1 2 3 27 27 H 1.08995 * 109.47303 * 239.99709 * 2 1 3 28 28 H 1.08997 * 109.46865 * 119.99790 * 2 1 3 29 29 H 0.97002 * 119.99814 * 180.02562 * 8 7 5 30 30 H 1.00893 * 110.99710 * 225.47380 * 13 3 2 31 31 H 1.09000 * 109.48234 * 310.65600 * 16 14 13 32 32 H 1.08993 * 109.48333 * 70.69786 * 16 14 13 33 33 H 1.09001 * 109.45889 * 190.00914 * 17 16 14 34 34 H 1.08999 * 109.45534 * 309.97913 * 17 16 14 35 35 H 1.09002 * 109.64145 * 69.65585 * 18 17 16 36 36 H 1.09001 * 109.64514 * 190.07136 * 18 17 16 37 37 H 1.07990 * 125.75984 * 180.02562 * 21 20 19 38 38 H 1.07997 * 126.68654 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5947 1.9853 0.8339 5 6 3.5402 1.4449 0.1429 6 1 4.1590 1.8069 -0.6649 7 6 4.1228 0.9850 1.3047 8 7 5.4131 0.7327 1.3381 9 14 3.0795 0.7204 2.8315 10 1 2.9987 1.9876 3.6015 11 1 1.7138 0.2969 2.4305 12 1 3.6967 -0.3336 3.6761 13 7 1.6673 2.0937 -1.2630 14 6 0.4998 2.9664 -1.0807 15 1 -0.0992 2.6083 -0.2435 16 6 -0.3483 2.9684 -2.3590 17 6 -1.4062 4.0716 -2.2663 18 6 -0.7266 5.4430 -2.3596 19 6 0.4181 5.4764 -1.3765 20 8 1.0701 6.5491 -0.9127 21 6 2.0251 6.1543 -0.0515 22 6 1.9888 4.8102 0.0400 23 6 0.9572 4.3761 -0.8110 24 1 -0.3633 0.4470 -0.9255 25 1 -0.3633 -1.0249 0.0756 26 1 -0.3633 0.5779 0.8497 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.8230 0.4088 2.1555 30 1 2.4457 2.6069 -1.6486 31 1 0.2935 3.1519 -3.2207 32 1 -0.8397 2.0020 -2.4707 33 1 -2.1176 3.9623 -3.0849 34 1 -1.9321 3.9913 -1.3149 35 1 -0.3466 5.5955 -3.3698 36 1 -1.4455 6.2255 -2.1166 37 1 2.7062 6.8046 0.4771 38 1 2.6272 4.1875 0.6490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169210537.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:11 Heat of formation + Delta-G solvation = -15.600112 kcal Electronic energy + Delta-G solvation = -19059.015175 eV Core-core repulsion = 16287.628694 eV Total energy + Delta-G solvation = -2771.386481 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.60866 -39.15718 -36.94953 -34.44399 -33.78490 -32.39652 -30.49867 -29.65538 -27.71669 -24.47157 -23.71966 -22.96347 -22.13597 -21.42819 -19.97012 -18.94327 -17.99616 -17.20797 -16.97669 -15.99077 -15.63569 -15.25164 -15.10242 -15.00767 -14.59145 -14.24470 -13.91073 -13.69834 -13.51249 -13.38078 -13.11433 -12.94246 -12.75490 -12.68265 -12.10515 -11.91060 -11.76354 -11.63425 -11.41230 -11.11044 -11.06271 -10.66754 -10.55474 -9.32829 -8.95314 -8.33625 -6.32742 0.82498 1.28993 1.33152 1.42830 1.67724 2.09018 2.31312 3.01374 3.55734 3.81016 3.91388 4.03782 4.25254 4.27950 4.42558 4.44900 4.54254 4.60399 4.64222 4.67348 4.76168 4.90541 4.99851 5.01510 5.09046 5.17649 5.24360 5.30846 5.36400 5.38469 5.44925 5.51143 5.59362 5.67009 5.81555 6.04528 6.23790 6.50503 6.69769 6.86930 7.32955 8.82927 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023396 B = 0.008303 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.495509 B = 3371.515118 C = 4089.391706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.202 3.798 4 H -0.003 1.003 5 C -0.526 4.526 6 H 0.034 0.966 7 C 0.024 3.976 8 N -0.941 5.941 9 Si 0.919 3.081 10 H -0.280 1.280 11 H -0.225 1.225 12 H -0.287 1.287 13 N -0.665 5.665 14 C 0.152 3.848 15 H 0.068 0.932 16 C -0.103 4.103 17 C -0.108 4.108 18 C -0.031 4.031 19 C -0.019 4.019 20 O -0.180 6.180 21 C -0.051 4.051 22 C -0.221 4.221 23 C -0.222 4.222 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.331 0.669 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.231 0.769 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.787 8.530 -5.341 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C 0.093 3.907 4 H 0.014 0.986 5 C -0.564 4.564 6 H 0.052 0.948 7 C -0.174 4.174 8 N -0.580 5.580 9 Si 0.743 3.257 10 H -0.206 1.206 11 H -0.148 1.148 12 H -0.213 1.213 13 N -0.293 5.293 14 C 0.042 3.958 15 H 0.086 0.914 16 C -0.141 4.141 17 C -0.145 4.145 18 C -0.068 4.068 19 C -0.070 4.070 20 O -0.076 6.076 21 C -0.117 4.117 22 C -0.241 4.241 23 C -0.225 4.225 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.247 0.753 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.087 8.190 -5.547 18.885 hybrid contribution 1.481 0.292 1.810 2.357 sum -14.605 8.482 -3.737 17.298 Atomic orbital electron populations 1.21758 0.95312 1.01090 1.01443 1.21828 0.95732 0.97889 0.99736 1.19295 0.92283 0.91822 0.87326 0.98577 1.21493 0.91729 1.42099 1.01057 0.94808 1.25676 0.95709 0.94238 1.01809 1.70103 1.13009 1.46231 1.28679 0.86326 0.81863 0.77946 0.79516 1.20585 1.14786 1.21347 1.60748 1.08452 1.32924 1.27168 1.20338 0.92392 0.84790 0.98271 0.91396 1.21619 0.96719 0.99815 0.95978 1.21615 0.97438 0.91526 1.03969 1.20403 0.91065 1.00045 0.95261 1.23074 0.99164 0.83359 1.01450 1.83861 1.39671 1.35457 1.48583 1.24487 0.94946 0.95407 0.96893 1.21727 1.02150 0.95986 1.04190 1.21269 1.00382 0.98442 1.02357 0.91352 0.92469 0.94242 0.93366 0.94400 0.92649 0.85141 0.91939 0.90330 0.87246 0.91543 0.88381 0.87979 0.75326 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 8.75 71.98 0.63 -4.09 16 2 C -0.11 -4.90 4.89 30.59 0.15 -4.75 16 3 C 0.20 9.42 1.43 44.17 0.06 9.49 16 4 H 0.00 -0.16 6.14 -2.38 -0.01 -0.18 16 5 C -0.53 -29.79 9.01 25.60 0.23 -29.56 16 6 H 0.03 2.14 7.69 -2.91 -0.02 2.12 16 7 C 0.02 1.40 5.35 84.65 0.45 1.86 16 8 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 9 Si 0.92 44.12 25.81 68.60 1.77 45.89 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.23 -9.88 5.40 99.48 0.54 -9.34 16 12 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 13 N -0.66 -27.11 5.83 -476.56 -2.78 -29.88 16 14 C 0.15 5.13 1.79 44.29 0.08 5.21 16 15 H 0.07 2.40 6.41 -2.39 -0.02 2.38 16 16 C -0.10 -2.59 5.54 30.77 0.17 -2.42 16 17 C -0.11 -1.94 5.89 30.75 0.18 -1.76 16 18 C -0.03 -0.60 6.30 30.03 0.19 -0.41 16 19 C -0.02 -0.56 7.23 25.00 0.18 -0.38 16 20 O -0.18 -5.45 10.64 -0.08 0.00 -5.45 16 21 C -0.05 -1.57 12.10 67.02 0.81 -0.76 16 22 C -0.22 -8.38 10.53 22.05 0.23 -8.15 16 23 C -0.22 -7.71 5.29 -20.06 -0.11 -7.81 16 24 H 0.07 2.14 6.54 -2.38 -0.02 2.13 16 25 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.04 1.31 8.02 -2.39 -0.02 1.29 16 27 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.04 1.72 4.81 -2.39 -0.01 1.71 16 29 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.33 14.79 7.46 -89.70 -0.67 14.12 16 31 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 32 H 0.08 1.85 7.55 -2.39 -0.02 1.83 16 33 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.23 8.11 -2.39 -0.02 1.21 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.23 5.25 8.06 -2.92 -0.02 5.22 16 38 H 0.12 5.52 7.97 -2.91 -0.02 5.50 16 Total: -1.00 -67.21 295.87 2.77 -64.44 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.21 Total: 27.05 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 3.26 Total: -43.54 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -2.48 Total: -88.40 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: 0.00 Total: -5.45 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.77 Total: 45.89 kcal Total: -67.21 2.77 -64.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169210537.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.844 kcal (2) G-P(sol) polarization free energy of solvation -67.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds