Wall clock time and date at job start Mon Mar 30 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46927 * 2 1 4 4 C 1.52998 * 109.47324 * 305.00452 * 3 2 1 5 5 O 1.42907 * 109.46856 * 65.00469 * 3 2 1 6 6 C 1.52999 * 109.47016 * 185.00334 * 3 2 1 7 7 N 1.46505 * 109.46891 * 180.02562 * 6 3 2 8 8 C 1.38861 * 119.99831 * 180.02562 * 7 6 3 9 9 C 1.39559 * 119.83938 * 179.97438 * 8 7 6 10 10 C 1.36344 * 120.15832 * 179.72212 * 9 8 7 11 11 C 1.40887 * 119.83651 * 0.25536 * 10 9 8 12 12 C 1.41135 * 120.15494 * 180.02562 * 11 10 9 13 13 H 1.08010 * 119.99712 * 335.07678 * 12 11 10 14 14 C 1.39857 * 120.00410 * 155.08585 * 12 11 10 15 15 N 1.30910 * 119.99602 * 342.11845 * 14 12 11 16 16 Si 1.86802 * 120.00640 * 162.12349 * 14 12 11 17 17 H 1.48501 * 109.47176 * 94.64918 * 16 14 12 18 18 H 1.48501 * 109.47269 * 214.65103 * 16 14 12 19 19 H 1.48503 * 109.46663 * 334.65340 * 16 14 12 20 20 C 1.40885 * 119.69029 * 359.97438 * 11 10 9 21 21 C 1.36338 * 119.83273 * 359.97438 * 20 11 10 22 22 H 1.08996 * 109.46813 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46619 * 299.99676 * 1 2 3 24 24 H 1.08996 * 109.47179 * 59.99551 * 1 2 3 25 25 H 1.08997 * 109.47152 * 240.00527 * 2 1 3 26 26 H 1.08995 * 109.47616 * 120.00153 * 2 1 3 27 27 H 1.08999 * 109.46893 * 300.00182 * 4 3 2 28 28 H 1.09004 * 109.47000 * 59.99771 * 4 3 2 29 29 H 1.08996 * 109.47193 * 179.97438 * 4 3 2 30 30 H 0.96699 * 113.99756 * 59.99736 * 5 3 2 31 31 H 1.08999 * 109.47457 * 60.00258 * 6 3 2 32 32 H 1.09003 * 109.46815 * 299.99992 * 6 3 2 33 33 H 0.96999 * 120.00169 * 359.97438 * 7 6 3 34 34 H 1.07997 * 119.92472 * 359.97438 * 9 8 7 35 35 H 1.08000 * 120.07953 * 180.27194 * 10 9 8 36 36 H 0.96997 * 120.00042 * 179.97438 * 15 14 12 37 37 H 1.07993 * 120.08129 * 180.02562 * 20 11 10 38 38 H 1.08003 * 119.91843 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4299 2.1993 -1.1815 5 8 1.6620 2.0814 1.2212 6 6 3.5648 1.4444 -0.1258 7 7 4.0531 2.8257 -0.1252 8 6 5.4140 3.0810 -0.2305 9 6 5.8755 4.3981 -0.2301 10 6 7.2108 4.6561 -0.3275 11 6 8.1248 3.5893 -0.4341 12 6 9.5085 3.8486 -0.5347 13 1 9.8536 4.7940 -0.9268 14 6 10.4328 2.8815 -0.1268 15 7 10.0538 1.9030 0.6560 16 14 12.2080 2.9859 -0.6987 17 1 13.0177 3.6920 0.3266 18 1 12.7457 1.6159 -0.8968 19 1 12.2719 3.7330 -1.9805 20 6 7.6513 2.2624 -0.4387 21 6 6.3134 2.0194 -0.3395 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.7182 1.7119 -2.1129 28 1 0.3435 2.1979 -1.0919 29 1 1.7928 3.2270 -1.1812 30 1 2.0142 1.6542 2.0139 31 1 3.8532 0.9572 -1.0572 32 1 3.9995 0.9054 0.7160 33 1 3.4258 3.5619 -0.0520 34 1 5.1737 5.2149 -0.1484 35 1 7.5668 5.6757 -0.3226 36 1 10.6947 1.2320 0.9386 37 1 8.3464 1.4399 -0.5196 38 1 5.9489 1.0027 -0.3425 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229318474.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:46 Heat of formation + Delta-G solvation = -42.144557 kcal Electronic energy + Delta-G solvation = -17887.609807 eV Core-core repulsion = 15115.072273 eV Total energy + Delta-G solvation = -2772.537534 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.04968 -37.57936 -34.65137 -33.35776 -32.73108 -29.85475 -29.43832 -28.28704 -26.58184 -24.38012 -22.94306 -21.11511 -20.16432 -19.82116 -17.17911 -16.61214 -16.26481 -15.45687 -14.99614 -14.79086 -14.25080 -14.05853 -13.74935 -12.76713 -12.68077 -12.63006 -12.42667 -12.23581 -12.14350 -11.90444 -11.72026 -11.60617 -11.20766 -11.06222 -10.99609 -10.80599 -10.53815 -10.43804 -9.82499 -9.67744 -9.26404 -9.19135 -8.49449 -7.46798 -6.61592 -6.34633 -4.00487 2.93443 3.12487 3.16155 3.21361 3.37675 4.05149 4.07758 4.45589 4.72716 4.79144 4.84403 4.87365 5.18624 5.38110 5.48424 5.72605 5.77118 5.80939 5.86418 5.89008 5.95607 6.02111 6.13515 6.28627 6.30646 6.35335 6.95913 6.96621 7.22895 7.38702 7.57828 7.65796 7.72002 7.87862 8.17773 8.32564 8.53123 8.75240 8.84441 9.08714 9.18315 10.39952 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.047409 B = 0.004214 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.464101 B = 6642.422719 C = 6973.670171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.121 3.879 4 C -0.138 4.138 5 O -0.556 6.556 6 C 0.115 3.885 7 N -0.754 5.754 8 C 0.094 3.906 9 C -0.160 4.160 10 C -0.185 4.185 11 C 0.074 3.926 12 C -0.468 4.468 13 H 0.072 0.928 14 C 0.075 3.925 15 N -0.809 5.809 16 Si 0.902 3.098 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.124 4.124 21 C -0.166 4.166 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.376 0.624 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.388 0.612 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.275 0.725 37 H 0.117 0.883 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.449 -4.400 -1.104 14.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.080 3.920 4 C -0.195 4.195 5 O -0.362 6.362 6 C -0.011 4.011 7 N -0.391 5.391 8 C -0.004 4.004 9 C -0.182 4.182 10 C -0.206 4.206 11 C 0.071 3.929 12 C -0.499 4.499 13 H 0.090 0.910 14 C -0.140 4.140 15 N -0.437 5.437 16 Si 0.727 3.273 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.144 4.144 21 C -0.188 4.188 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.223 0.777 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.221 0.779 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.631 -4.396 -1.405 14.391 hybrid contribution 1.027 -0.246 0.304 1.098 sum -12.605 -4.642 -1.101 13.477 Atomic orbital electron populations 1.21752 0.95155 1.01200 1.02488 1.22141 0.97066 0.96492 1.02885 1.21459 0.92823 0.91814 0.85890 1.21760 1.00921 1.01060 0.95762 1.86510 1.76735 1.57555 1.15371 1.21640 0.92397 0.86396 1.00664 1.43764 1.04285 1.04558 1.86465 1.17372 0.82660 0.93325 1.06992 1.19809 0.95577 0.93126 1.09660 1.20554 0.92428 0.97658 1.09923 1.17485 0.92993 0.90946 0.91515 1.19360 0.90766 1.01419 1.38347 0.90984 1.25784 1.00798 0.94550 0.92874 1.69862 1.36578 1.12002 1.25211 0.86420 0.82492 0.78276 0.80152 1.19879 1.20310 1.18681 1.20917 0.93008 0.97672 1.02801 1.20077 0.93864 0.95291 1.09556 0.93063 0.92174 0.92368 0.90936 0.91562 0.91230 0.91834 0.91693 0.77721 0.92913 0.93518 0.77851 0.89620 0.89071 0.91402 0.86478 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.32 37.16 0.35 -0.95 16 2 C -0.15 -1.42 5.20 -26.73 -0.14 -1.56 16 3 C 0.12 1.41 0.74 -90.62 -0.07 1.35 16 4 C -0.14 -1.56 8.18 37.16 0.30 -1.26 16 5 O -0.56 -6.79 12.26 -35.23 -0.43 -7.23 16 6 C 0.12 1.70 4.00 -4.04 -0.02 1.69 16 7 N -0.75 -13.43 5.29 -58.50 -0.31 -13.74 16 8 C 0.09 2.08 6.67 -83.69 -0.56 1.52 16 9 C -0.16 -3.68 9.82 -39.77 -0.39 -4.07 16 10 C -0.19 -4.69 9.74 -39.26 -0.38 -5.07 16 11 C 0.07 2.02 5.57 -106.79 -0.59 1.43 16 12 C -0.47 -12.89 9.03 -37.88 -0.34 -13.24 16 13 H 0.07 1.92 7.91 -52.48 -0.41 1.50 16 14 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 15 N -0.81 -21.72 10.98 55.54 0.61 -21.11 16 16 Si 0.90 19.41 29.60 -169.99 -5.03 14.38 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 20 C -0.12 -3.30 8.63 -39.26 -0.34 -3.64 16 21 C -0.17 -3.95 9.23 -39.77 -0.37 -4.31 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 24 H 0.06 0.50 6.34 -51.93 -0.33 0.17 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.65 6.35 -51.93 -0.33 0.32 16 29 H 0.06 0.81 6.86 -51.93 -0.36 0.45 16 30 H 0.38 3.67 9.05 45.56 0.41 4.08 16 31 H 0.05 0.80 7.92 -51.93 -0.41 0.39 16 32 H 0.05 0.72 7.93 -51.93 -0.41 0.30 16 33 H 0.39 6.54 7.19 -40.82 -0.29 6.24 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 36 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 37 H 0.12 3.22 6.18 -52.49 -0.32 2.90 16 38 H 0.09 1.86 6.68 -52.48 -0.35 1.51 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -29.07 307.92 -8.04 -37.12 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -4.89 Total: 12.19 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -2.64 Total: -26.25 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.30 Total: -34.85 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.43 Total: -7.23 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.07 -8.04 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229318474.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.026 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds