Wall clock time and date at job start Mon Mar 30 2020 06:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46927 * 2 1 4 4 C 1.52998 * 109.47324 * 305.00452 * 3 2 1 5 5 O 1.42907 * 109.46856 * 65.00469 * 3 2 1 6 6 C 1.52999 * 109.47016 * 185.00334 * 3 2 1 7 7 N 1.46505 * 109.46891 * 180.02562 * 6 3 2 8 8 C 1.38861 * 119.99831 * 180.02562 * 7 6 3 9 9 C 1.39559 * 119.83938 * 179.97438 * 8 7 6 10 10 C 1.36344 * 120.15832 * 179.72212 * 9 8 7 11 11 C 1.40887 * 119.83651 * 0.25536 * 10 9 8 12 12 C 1.41135 * 120.15494 * 180.02562 * 11 10 9 13 13 H 1.08010 * 119.99712 * 335.07678 * 12 11 10 14 14 C 1.39857 * 120.00410 * 155.08585 * 12 11 10 15 15 N 1.30910 * 119.99602 * 342.11845 * 14 12 11 16 16 Si 1.86802 * 120.00640 * 162.12349 * 14 12 11 17 17 H 1.48501 * 109.47176 * 94.64918 * 16 14 12 18 18 H 1.48501 * 109.47269 * 214.65103 * 16 14 12 19 19 H 1.48503 * 109.46663 * 334.65340 * 16 14 12 20 20 C 1.40885 * 119.69029 * 359.97438 * 11 10 9 21 21 C 1.36338 * 119.83273 * 359.97438 * 20 11 10 22 22 H 1.08996 * 109.46813 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46619 * 299.99676 * 1 2 3 24 24 H 1.08996 * 109.47179 * 59.99551 * 1 2 3 25 25 H 1.08997 * 109.47152 * 240.00527 * 2 1 3 26 26 H 1.08995 * 109.47616 * 120.00153 * 2 1 3 27 27 H 1.08999 * 109.46893 * 300.00182 * 4 3 2 28 28 H 1.09004 * 109.47000 * 59.99771 * 4 3 2 29 29 H 1.08996 * 109.47193 * 179.97438 * 4 3 2 30 30 H 0.96699 * 113.99756 * 59.99736 * 5 3 2 31 31 H 1.08999 * 109.47457 * 60.00258 * 6 3 2 32 32 H 1.09003 * 109.46815 * 299.99992 * 6 3 2 33 33 H 0.96999 * 120.00169 * 359.97438 * 7 6 3 34 34 H 1.07997 * 119.92472 * 359.97438 * 9 8 7 35 35 H 1.08000 * 120.07953 * 180.27194 * 10 9 8 36 36 H 0.96997 * 120.00042 * 179.97438 * 15 14 12 37 37 H 1.07993 * 120.08129 * 180.02562 * 20 11 10 38 38 H 1.08003 * 119.91843 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4299 2.1993 -1.1815 5 8 1.6620 2.0814 1.2212 6 6 3.5648 1.4444 -0.1258 7 7 4.0531 2.8257 -0.1252 8 6 5.4140 3.0810 -0.2305 9 6 5.8755 4.3981 -0.2301 10 6 7.2108 4.6561 -0.3275 11 6 8.1248 3.5893 -0.4341 12 6 9.5085 3.8486 -0.5347 13 1 9.8536 4.7940 -0.9268 14 6 10.4328 2.8815 -0.1268 15 7 10.0538 1.9030 0.6560 16 14 12.2080 2.9859 -0.6987 17 1 13.0177 3.6920 0.3266 18 1 12.7457 1.6159 -0.8968 19 1 12.2719 3.7330 -1.9805 20 6 7.6513 2.2624 -0.4387 21 6 6.3134 2.0194 -0.3395 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.7182 1.7119 -2.1129 28 1 0.3435 2.1979 -1.0919 29 1 1.7928 3.2270 -1.1812 30 1 2.0142 1.6542 2.0139 31 1 3.8532 0.9572 -1.0572 32 1 3.9995 0.9054 0.7160 33 1 3.4258 3.5619 -0.0520 34 1 5.1737 5.2149 -0.1484 35 1 7.5668 5.6757 -0.3226 36 1 10.6947 1.2320 0.9386 37 1 8.3464 1.4399 -0.5196 38 1 5.9489 1.0027 -0.3425 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229318474.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:45 Heat of formation + Delta-G solvation = -60.604885 kcal Electronic energy + Delta-G solvation = -17888.410307 eV Core-core repulsion = 15115.072273 eV Total energy + Delta-G solvation = -2773.338034 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.25659 -39.21605 -36.32616 -34.66190 -34.06691 -31.35799 -31.21094 -29.69699 -27.84157 -26.03438 -24.15579 -22.91201 -21.69822 -21.05041 -19.15210 -18.07600 -17.38608 -16.82864 -16.41009 -16.17538 -15.68487 -15.42287 -15.01325 -14.44284 -14.36797 -13.95723 -13.84400 -13.54106 -13.30532 -13.06201 -12.94032 -12.87617 -12.72452 -12.65930 -12.48776 -12.25159 -11.80120 -11.58564 -11.45915 -11.16221 -11.05748 -10.79213 -10.29233 -9.41249 -8.54755 -8.15242 -6.00407 1.10753 1.18014 1.40392 1.52969 1.59506 2.27915 2.81770 2.85965 3.42416 3.74955 3.84437 3.92396 3.97026 4.37927 4.43715 4.49652 4.57872 4.70259 4.71272 4.86263 4.97106 5.00232 5.05846 5.09119 5.14530 5.15131 5.27976 5.38241 5.45679 5.47406 5.68765 5.79713 5.96079 6.18702 6.39274 6.67320 6.81316 6.88283 7.08653 7.15249 7.31614 8.48759 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.047409 B = 0.004214 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.464101 B = 6642.422719 C = 6973.670171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.144 4.144 3 C 0.130 3.870 4 C -0.140 4.140 5 O -0.567 6.567 6 C 0.110 3.890 7 N -0.743 5.743 8 C 0.112 3.888 9 C -0.168 4.168 10 C -0.195 4.195 11 C 0.035 3.965 12 C -0.507 4.507 13 H 0.067 0.933 14 C 0.032 3.968 15 N -0.842 5.842 16 Si 0.976 3.024 17 H -0.265 1.265 18 H -0.268 1.268 19 H -0.262 1.262 20 C -0.142 4.142 21 C -0.175 4.175 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.386 0.614 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.395 0.605 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.282 0.718 37 H 0.099 0.901 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.777 -4.897 -1.259 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C 0.089 3.911 4 C -0.197 4.197 5 O -0.374 6.374 6 C -0.015 4.015 7 N -0.379 5.379 8 C 0.013 3.987 9 C -0.190 4.190 10 C -0.215 4.215 11 C 0.032 3.968 12 C -0.539 4.539 13 H 0.085 0.915 14 C -0.179 4.179 15 N -0.471 5.471 16 Si 0.798 3.202 17 H -0.190 1.190 18 H -0.192 1.192 19 H -0.185 1.185 20 C -0.163 4.163 21 C -0.197 4.197 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.235 0.765 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.231 0.769 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.011 -4.899 -1.549 15.866 hybrid contribution 1.232 -0.092 0.385 1.294 sum -13.778 -4.991 -1.164 14.701 Atomic orbital electron populations 1.21729 0.94243 1.01992 1.02331 1.22116 0.97756 0.94859 1.03518 1.21391 0.90397 0.93320 0.85980 1.21797 1.01720 1.00231 0.95938 1.86495 1.76778 1.58163 1.15961 1.21871 0.94813 0.84368 1.00488 1.43818 1.02559 1.06449 1.85060 1.17483 0.84484 0.92691 1.04065 1.20093 0.95268 0.94460 1.09190 1.20757 0.93378 0.97550 1.09807 1.17808 0.93743 0.91918 0.93328 1.19595 0.91718 1.02246 1.40318 0.91459 1.26607 1.05146 0.93843 0.92346 1.69922 1.38335 1.12793 1.26005 0.85290 0.76725 0.78649 0.79551 1.19041 1.19216 1.18544 1.20855 0.94012 0.97001 1.04391 1.20227 0.93134 0.96772 1.09591 0.91854 0.92704 0.92130 0.90385 0.90948 0.90519 0.90605 0.93004 0.76548 0.92920 0.93762 0.76933 0.86805 0.88568 0.90763 0.88307 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.32 71.98 0.67 -1.45 16 2 C -0.14 -2.38 5.20 30.60 0.16 -2.22 16 3 C 0.13 2.71 0.74 -10.79 -0.01 2.70 16 4 C -0.14 -2.82 8.18 71.98 0.59 -2.23 16 5 O -0.57 -12.45 12.26 -148.98 -1.83 -14.28 16 6 C 0.11 3.01 4.00 86.38 0.35 3.36 16 7 N -0.74 -24.94 5.29 -338.98 -1.79 -26.73 16 8 C 0.11 4.87 6.67 38.67 0.26 5.12 16 9 C -0.17 -7.58 9.82 22.15 0.22 -7.36 16 10 C -0.19 -9.98 9.74 22.48 0.22 -9.76 16 11 C 0.03 1.98 5.57 -21.27 -0.12 1.86 16 12 C -0.51 -28.95 9.03 23.37 0.21 -28.74 16 13 H 0.07 3.73 7.91 -2.91 -0.02 3.70 16 14 C 0.03 1.72 5.13 85.22 0.44 2.16 16 15 N -0.84 -46.39 10.98 21.81 0.24 -46.15 16 16 Si 0.98 40.42 29.60 68.60 2.03 42.45 16 17 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 18 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 C -0.14 -7.79 8.63 22.47 0.19 -7.60 16 21 C -0.18 -8.30 9.23 22.15 0.20 -8.09 16 22 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.05 0.87 7.82 -2.38 -0.02 0.85 16 24 H 0.06 0.85 6.34 -2.39 -0.02 0.84 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.35 6.35 -2.38 -0.02 1.34 16 29 H 0.05 1.18 6.86 -2.39 -0.02 1.16 16 30 H 0.39 6.64 9.05 -74.06 -0.67 5.97 16 31 H 0.05 1.48 7.92 -2.39 -0.02 1.47 16 32 H 0.04 1.27 7.93 -2.39 -0.02 1.25 16 33 H 0.40 12.36 7.19 -92.71 -0.67 11.69 16 34 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 35 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.28 14.10 8.30 -92.71 -0.77 13.33 16 37 H 0.10 5.67 6.18 -2.91 -0.02 5.65 16 38 H 0.10 4.45 6.68 -2.91 -0.02 4.43 16 Total: -1.00 -63.12 307.92 1.75 -61.37 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: -0.27 Total: 35.59 kcal Atomic # 6 Polarization: -55.62 SS G_CDS: 3.38 Total: -52.25 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.55 Total: -72.88 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -1.83 Total: -14.28 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -63.12 1.75 -61.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229318474.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.764 kcal (2) G-P(sol) polarization free energy of solvation -63.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds