Wall clock time and date at job start Mon Mar 30 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47101 * 2 1 4 4 O 1.42899 * 109.46995 * 239.99723 * 2 1 3 5 5 C 1.50707 * 109.46849 * 119.99751 * 2 1 3 6 6 C 1.38258 * 119.99928 * 330.02345 * 5 2 1 7 7 C 1.38217 * 119.99703 * 179.97438 * 6 5 2 8 8 C 1.38251 * 119.99574 * 359.74567 * 7 6 5 9 9 C 1.38213 * 120.00491 * 0.50782 * 8 7 6 10 10 C 1.50703 * 120.00060 * 179.76614 * 9 8 7 11 11 H 1.09002 * 109.47152 * 159.72521 * 10 9 8 12 12 N 1.46896 * 109.46997 * 39.72459 * 10 9 8 13 13 C 1.53000 * 109.46912 * 279.72749 * 10 9 8 14 14 C 1.50703 * 109.46801 * 184.99967 * 13 10 9 15 15 H 1.07998 * 120.00413 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99680 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00285 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99651 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47220 * 60.00221 * 18 16 14 20 20 H 1.48500 * 109.47168 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47296 * 300.00052 * 18 16 14 22 22 C 1.38206 * 119.99817 * 149.99940 * 5 2 1 23 23 H 1.09000 * 109.47476 * 300.00206 * 1 2 3 24 24 H 1.08997 * 109.47129 * 60.00453 * 1 2 3 25 25 H 1.09004 * 109.46991 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47121 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47162 * 299.99877 * 3 2 1 28 28 H 1.09000 * 109.47124 * 59.99578 * 3 2 1 29 29 H 0.96697 * 113.99755 * 300.00082 * 4 2 1 30 30 H 1.07997 * 120.00298 * 359.97438 * 6 5 2 31 31 H 1.07997 * 119.99658 * 180.02562 * 7 6 5 32 32 H 1.08009 * 119.99485 * 180.27683 * 8 7 6 33 33 H 1.00900 * 111.00550 * 300.00040 * 12 10 9 34 34 H 1.00896 * 111.00310 * 63.95626 * 12 10 9 35 35 H 1.09002 * 109.47069 * 304.99691 * 13 10 9 36 36 H 1.08991 * 109.47625 * 65.00010 * 13 10 9 37 37 H 0.96998 * 119.99928 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.00406 * 0.02562 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7104 1.2306 6 6 1.2848 -0.6910 2.3935 7 6 1.7453 -1.3429 3.5219 8 6 2.9507 -2.0189 3.4861 9 6 3.7005 -2.0339 2.3250 10 6 5.0170 -2.7663 2.2876 11 1 5.2842 -2.9807 1.2529 12 7 4.8978 -4.0261 3.0337 13 6 6.1026 -1.8968 2.9251 14 6 7.4402 -2.5753 2.7782 15 1 7.5092 -3.5308 2.2796 16 6 8.5761 -1.9756 3.2793 17 7 8.4923 -0.8113 3.8852 18 14 10.2342 -2.8162 3.0965 19 1 10.5359 -3.0078 1.6551 20 1 11.2879 -1.9724 3.7154 21 1 10.1970 -4.1370 3.7742 22 6 3.2399 -1.3817 1.1964 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.7209 -1.5952 -1.2328 30 1 0.3412 -0.1664 2.4202 31 1 1.1612 -1.3281 4.4302 32 1 3.3084 -2.5321 4.3665 33 1 4.6506 -3.8541 3.9967 34 1 4.2328 -4.6449 2.5946 35 1 6.1303 -0.9273 2.4276 36 1 5.8809 -1.7561 3.9829 37 1 9.2914 -0.3896 4.2381 38 1 3.8239 -1.3969 0.2879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260241153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:32 Heat of formation + Delta-G solvation = -41.456815 kcal Electronic energy + Delta-G solvation = -18146.846969 eV Core-core repulsion = 15374.339257 eV Total energy + Delta-G solvation = -2772.507712 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.88542 -37.59850 -35.17379 -32.73227 -32.21115 -30.51084 -29.08349 -28.20688 -27.42979 -24.40767 -22.95622 -21.94207 -20.78469 -19.11871 -17.25271 -16.43520 -16.07592 -15.35771 -14.97873 -14.78850 -14.39068 -14.23761 -13.93686 -13.48489 -12.78952 -12.66871 -12.49690 -12.31608 -12.25640 -11.91601 -11.81379 -11.48949 -11.24964 -11.03174 -10.76609 -10.60305 -10.53816 -10.20496 -10.03662 -9.59875 -9.07371 -8.55583 -8.28949 -8.23381 -7.89869 -5.88608 -3.87557 1.56806 1.68329 3.42231 3.45453 3.49360 3.99206 4.15632 4.56689 4.61301 4.81608 4.99081 5.16936 5.20765 5.36679 5.42669 5.45849 5.51586 5.62884 5.68018 5.74766 5.83470 5.86031 5.98388 6.10637 6.19770 6.29558 6.39684 6.69052 6.74791 6.78869 7.00149 7.28410 7.57274 7.61149 7.72726 8.00735 8.11682 8.19440 8.55384 9.18279 9.74272 11.23157 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.028931 B = 0.005156 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.582089 B = 5428.869595 C = 5766.650205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.171 3.829 3 C -0.135 4.135 4 O -0.555 6.555 5 C -0.121 4.121 6 C -0.129 4.129 7 C -0.120 4.120 8 C -0.118 4.118 9 C -0.095 4.095 10 C 0.130 3.870 11 H 0.077 0.923 12 N -0.821 5.821 13 C 0.038 3.962 14 C -0.495 4.495 15 H 0.062 0.938 16 C 0.051 3.949 17 N -0.903 5.903 18 Si 0.893 3.107 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.278 1.278 22 C -0.099 4.099 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.376 0.624 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.333 0.667 34 H 0.321 0.679 35 H 0.019 0.981 36 H 0.016 0.984 37 H 0.258 0.742 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.644 0.643 -5.050 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.130 3.870 3 C -0.193 4.193 4 O -0.360 6.360 5 C -0.121 4.121 6 C -0.147 4.147 7 C -0.139 4.139 8 C -0.136 4.136 9 C -0.097 4.097 10 C 0.019 3.981 11 H 0.095 0.905 12 N -0.348 5.348 13 C 0.001 3.999 14 C -0.533 4.533 15 H 0.080 0.920 16 C -0.149 4.149 17 N -0.544 5.544 18 Si 0.722 3.278 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.117 4.117 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.223 0.777 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.147 0.853 34 H 0.132 0.868 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.457 1.248 -5.237 17.315 hybrid contribution -0.342 -0.547 0.415 0.767 sum -16.799 0.701 -4.822 17.491 Atomic orbital electron populations 1.22530 0.95571 1.02497 1.02657 1.19954 0.92093 0.92506 0.82449 1.21747 1.02710 0.92715 1.02078 1.86554 1.77357 1.28934 1.43187 1.20424 0.96038 0.99836 0.95799 1.20911 0.99798 1.01065 0.92921 1.21034 0.96561 0.98353 0.97908 1.21005 0.94745 1.00093 0.97802 1.21420 0.97832 0.97510 0.92969 1.20826 0.89906 0.88541 0.98864 0.90479 1.58865 1.55544 1.14660 1.05699 1.19115 0.91566 0.93686 0.95524 1.21125 0.91182 1.05095 1.35916 0.92018 1.25021 0.99109 0.95008 0.95748 1.69964 1.28905 1.16188 1.39294 0.86641 0.83638 0.79373 0.78192 1.20421 1.21615 1.20322 1.20926 0.94951 0.97165 0.98683 0.91302 0.91745 0.92230 0.91358 0.91862 0.91156 0.77698 0.86499 0.86562 0.86424 0.85331 0.86822 0.96253 0.96612 0.93207 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 8.12 37.16 0.30 -1.32 16 2 C 0.17 2.03 1.24 -91.77 -0.11 1.91 16 3 C -0.14 -1.61 8.82 37.15 0.33 -1.28 16 4 O -0.55 -6.88 11.97 -35.23 -0.42 -7.30 16 5 C -0.12 -1.68 4.81 -104.62 -0.50 -2.18 16 6 C -0.13 -1.68 9.14 -39.58 -0.36 -2.04 16 7 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 8 C -0.12 -1.90 9.30 -39.59 -0.37 -2.26 16 9 C -0.10 -1.68 4.95 -104.62 -0.52 -2.20 16 10 C 0.13 2.66 2.93 -68.87 -0.20 2.46 16 11 H 0.08 1.62 8.00 -51.93 -0.42 1.20 16 12 N -0.82 -15.22 8.77 -5.65 -0.05 -15.27 16 13 C 0.04 0.99 4.60 -27.88 -0.13 0.86 16 14 C -0.49 -14.13 8.84 -34.44 -0.30 -14.44 16 15 H 0.06 1.75 7.74 -52.49 -0.41 1.35 16 16 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 17 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 18 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.10 -1.62 8.97 -39.59 -0.36 -1.97 16 23 H 0.07 0.58 6.51 -51.93 -0.34 0.24 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.38 3.51 9.04 45.56 0.41 3.92 16 30 H 0.12 1.23 6.17 -52.49 -0.32 0.91 16 31 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.12 1.82 6.65 -52.48 -0.35 1.47 16 33 H 0.33 5.90 7.34 -39.29 -0.29 5.61 16 34 H 0.32 5.01 9.06 -39.29 -0.36 4.66 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.13 2.10 7.46 -52.48 -0.39 1.71 16 LS Contribution 313.44 15.07 4.72 4.72 Total: -1.00 -31.96 313.44 -7.73 -39.68 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.97 Total: 10.90 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -2.72 Total: -23.14 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.69 Total: -42.19 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.42 Total: -7.30 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.96 -7.73 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260241153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.772 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds