Wall clock time and date at job start Mon Mar 30 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47555 * 2 1 4 4 C 1.38754 * 120.02644 * 272.27906 * 3 2 1 5 5 O 1.35901 * 120.05660 * 359.94538 * 4 3 2 6 6 C 1.42905 * 117.00085 * 180.02562 * 5 4 3 7 7 C 1.38711 * 119.88816 * 179.97438 * 4 3 2 8 8 C 1.38165 * 119.94396 * 0.02562 * 7 4 3 9 9 C 1.38249 * 120.05421 * 359.73674 * 8 7 4 10 10 C 1.38125 * 120.02853 * 92.24351 * 3 2 1 11 11 C 1.50699 * 119.97066 * 0.02562 * 10 3 2 12 12 H 1.09004 * 109.46599 * 316.75535 * 11 10 3 13 13 N 1.46896 * 109.47231 * 76.75720 * 11 10 3 14 14 C 1.53002 * 109.46941 * 196.75944 * 11 10 3 15 15 C 1.50699 * 109.47063 * 174.59577 * 14 11 10 16 16 H 1.07997 * 120.00041 * 359.97438 * 15 14 11 17 17 C 1.37873 * 119.99896 * 180.02562 * 15 14 11 18 18 N 1.31516 * 120.00333 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00056 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46877 * 60.00412 * 19 17 15 21 21 H 1.48498 * 109.47248 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47179 * 300.00151 * 19 17 15 23 23 H 1.09000 * 109.47237 * 175.56804 * 1 2 3 24 24 H 1.08996 * 109.46814 * 295.56495 * 1 2 3 25 25 H 1.08993 * 109.47410 * 55.56214 * 1 2 3 26 26 H 1.09010 * 109.47044 * 240.00067 * 2 1 3 27 27 H 1.08996 * 109.47417 * 120.00313 * 2 1 3 28 28 H 1.09003 * 109.46938 * 59.99869 * 6 5 4 29 29 H 1.08996 * 109.47373 * 180.02562 * 6 5 4 30 30 H 1.08999 * 109.47012 * 300.00450 * 6 5 4 31 31 H 1.08003 * 120.02926 * 180.02562 * 7 4 3 32 32 H 1.08006 * 119.97219 * 180.02562 * 8 7 4 33 33 H 1.08003 * 119.94190 * 180.25626 * 9 8 7 34 34 H 1.00895 * 111.00280 * 60.00348 * 13 11 10 35 35 H 1.00900 * 110.99824 * 183.95222 * 13 11 10 36 36 H 1.09004 * 109.47024 * 54.59307 * 14 11 10 37 37 H 1.08996 * 109.47058 * 294.59882 * 14 11 10 38 38 H 0.96994 * 120.00269 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2189 2.0913 -1.2004 5 8 1.9498 1.4675 -2.3774 6 6 2.1654 2.2187 -3.5739 7 6 2.6810 3.3992 -1.1970 8 6 2.9549 4.0308 0.0009 9 6 2.7636 3.3621 1.1957 10 6 2.3070 2.0569 1.1949 11 6 2.1045 1.3292 2.4990 12 1 1.1625 0.7817 2.4670 13 7 3.2115 0.3872 2.7111 14 6 2.0681 2.3403 3.6468 15 6 1.7339 1.6288 4.9325 16 1 1.5640 0.5622 4.9311 17 6 1.6439 2.3396 6.1105 18 7 1.8503 3.6384 6.1122 19 14 1.2289 1.4578 7.7041 20 1 2.2624 0.4288 7.9840 21 1 1.1937 2.4390 8.8181 22 1 -0.0985 0.8044 7.5771 23 1 -0.3634 -1.0246 -0.0794 24 1 -0.3633 0.4435 0.9270 25 1 -0.3634 0.5811 -0.8475 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.2125 2.5158 -3.6325 29 1 1.9125 1.6052 -4.4386 30 1 1.5355 3.1081 -3.5630 31 1 2.8265 3.9234 -2.1300 32 1 3.3143 5.0493 0.0041 33 1 2.9743 3.8590 2.1313 34 1 4.0964 0.8707 2.7446 35 1 3.0662 -0.1591 3.5469 36 1 1.3094 3.0956 3.4417 37 1 3.0425 2.8198 3.7396 38 1 1.7874 4.1384 6.9410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260323454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:49 Heat of formation + Delta-G solvation = -33.053783 kcal Electronic energy + Delta-G solvation = -18418.343927 eV Core-core repulsion = 15646.200599 eV Total energy + Delta-G solvation = -2772.143329 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.07998 -37.78030 -34.97878 -33.70843 -32.31496 -29.54358 -29.06080 -27.84522 -27.09059 -24.49820 -23.19138 -22.24323 -20.42048 -19.46818 -17.28690 -16.60036 -15.97793 -15.61394 -15.17430 -14.91943 -14.54723 -13.87882 -13.77701 -13.62713 -12.95701 -12.71611 -12.52770 -12.27884 -12.18892 -11.67179 -11.55790 -11.40517 -11.07664 -10.94869 -10.78184 -10.66807 -10.44645 -10.31974 -9.99410 -9.75385 -9.13021 -8.44514 -8.23496 -7.72977 -7.70436 -6.07354 -4.11037 1.74842 1.88785 3.29060 3.34149 3.36130 3.47621 4.16417 4.39809 5.00792 5.11424 5.14968 5.22891 5.28183 5.42942 5.44473 5.58740 5.65096 5.82870 5.83769 5.93168 5.96643 6.05216 6.34276 6.41733 6.44845 6.54271 6.64443 6.77476 6.84060 6.95815 7.18776 7.24294 7.49984 7.59861 7.71645 7.87040 8.08332 8.25004 8.37280 8.95292 9.53983 11.03561 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.034049 B = 0.005546 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.143470 B = 5047.593868 C = 5550.714577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.093 4.093 4 C 0.112 3.888 5 O -0.316 6.316 6 C 0.030 3.970 7 C -0.217 4.217 8 C -0.095 4.095 9 C -0.142 4.142 10 C -0.025 4.025 11 C 0.126 3.874 12 H 0.079 0.921 13 N -0.835 5.835 14 C -0.005 4.005 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.331 0.669 35 H 0.345 0.655 36 H 0.021 0.979 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 -2.243 -15.181 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.094 4.094 4 C 0.068 3.932 5 O -0.230 6.230 6 C -0.066 4.066 7 C -0.236 4.236 8 C -0.113 4.113 9 C -0.160 4.160 10 C -0.026 4.026 11 C 0.015 3.985 12 H 0.097 0.903 13 N -0.363 5.363 14 C -0.043 4.043 15 C -0.563 4.563 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.810 -2.618 -15.788 16.024 hybrid contribution 0.014 0.710 1.656 1.802 sum 0.824 -1.908 -14.132 14.284 Atomic orbital electron populations 1.21701 0.95696 1.00896 1.01737 1.20409 0.95251 0.92538 1.03430 1.19119 1.03728 0.97012 0.89509 1.18810 0.97740 0.91330 0.85332 1.86049 1.83117 1.41343 1.12496 1.22949 1.00766 0.97080 0.85776 1.21057 1.08667 0.94899 0.98928 1.20862 0.99165 0.99311 0.91956 1.21340 1.01176 0.95026 0.98492 1.19909 0.94858 0.93477 0.94306 1.20472 0.94501 0.93183 0.90323 0.90295 1.59152 1.04431 1.27668 1.45074 1.19879 0.97576 0.94712 0.92176 1.21124 1.48330 0.94291 0.92555 0.92618 1.24996 0.95195 0.94802 0.99138 1.69947 1.49343 1.06352 1.27429 0.86661 0.79038 0.79353 0.82973 1.20211 1.21343 1.20215 0.93030 0.92559 0.93283 0.91863 0.88824 0.93088 0.88816 0.93084 0.86383 0.86440 0.84837 0.85854 0.84112 0.96097 0.96246 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.85 37.16 0.37 -1.77 16 2 C -0.08 -1.28 5.19 -27.88 -0.14 -1.42 16 3 C -0.09 -1.63 5.15 -104.47 -0.54 -2.17 16 4 C 0.11 1.82 6.66 -39.22 -0.26 1.56 16 5 O -0.32 -4.57 9.58 -19.43 -0.19 -4.76 16 6 C 0.03 0.29 9.81 101.05 0.99 1.29 16 7 C -0.22 -3.25 9.04 -39.43 -0.36 -3.61 16 8 C -0.09 -1.51 10.04 -39.60 -0.40 -1.91 16 9 C -0.14 -2.63 9.03 -39.56 -0.36 -2.99 16 10 C -0.02 -0.47 5.34 -104.65 -0.56 -1.03 16 11 C 0.13 2.57 2.10 -68.87 -0.14 2.42 16 12 H 0.08 1.67 6.65 -51.93 -0.35 1.32 16 13 N -0.84 -15.53 8.30 -5.65 -0.05 -15.58 16 14 C -0.01 -0.13 3.35 -27.88 -0.09 -0.22 16 15 C -0.52 -14.05 8.55 -34.44 -0.29 -14.34 16 16 H 0.06 1.44 7.17 -52.49 -0.38 1.06 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 19 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.90 7.40 -51.93 -0.38 0.51 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.98 7.60 -51.92 -0.39 0.59 16 27 H 0.09 1.59 6.10 -51.93 -0.32 1.27 16 28 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.12 1.43 6.30 -52.48 -0.33 1.10 16 32 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.13 2.65 6.08 -52.48 -0.32 2.33 16 34 H 0.33 6.06 8.99 -39.29 -0.35 5.71 16 35 H 0.35 6.49 7.93 -39.29 -0.31 6.18 16 36 H 0.02 0.56 7.96 -51.93 -0.41 0.15 16 37 H 0.02 0.50 7.15 -51.93 -0.37 0.13 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -29.33 307.05 -7.32 -36.65 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -5.54 Total: 10.86 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: -1.89 Total: -22.60 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.69 Total: -40.90 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.19 Total: -4.76 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.33 -7.32 -36.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.596 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds