Wall clock time and date at job start Mon Mar 30 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47555 * 2 1 4 4 C 1.38754 * 120.02644 * 272.27906 * 3 2 1 5 5 O 1.35901 * 120.05660 * 359.94538 * 4 3 2 6 6 C 1.42905 * 117.00085 * 180.02562 * 5 4 3 7 7 C 1.38711 * 119.88816 * 179.97438 * 4 3 2 8 8 C 1.38165 * 119.94396 * 0.02562 * 7 4 3 9 9 C 1.38249 * 120.05421 * 359.73674 * 8 7 4 10 10 C 1.38125 * 120.02853 * 92.24351 * 3 2 1 11 11 C 1.50699 * 119.97066 * 0.02562 * 10 3 2 12 12 H 1.09004 * 109.46599 * 316.75535 * 11 10 3 13 13 N 1.46896 * 109.47231 * 76.75720 * 11 10 3 14 14 C 1.53002 * 109.46941 * 196.75944 * 11 10 3 15 15 C 1.50699 * 109.47063 * 174.59577 * 14 11 10 16 16 H 1.07997 * 120.00041 * 359.97438 * 15 14 11 17 17 C 1.37873 * 119.99896 * 180.02562 * 15 14 11 18 18 N 1.31516 * 120.00333 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00056 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46877 * 60.00412 * 19 17 15 21 21 H 1.48498 * 109.47248 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47179 * 300.00151 * 19 17 15 23 23 H 1.09000 * 109.47237 * 175.56804 * 1 2 3 24 24 H 1.08996 * 109.46814 * 295.56495 * 1 2 3 25 25 H 1.08993 * 109.47410 * 55.56214 * 1 2 3 26 26 H 1.09010 * 109.47044 * 240.00067 * 2 1 3 27 27 H 1.08996 * 109.47417 * 120.00313 * 2 1 3 28 28 H 1.09003 * 109.46938 * 59.99869 * 6 5 4 29 29 H 1.08996 * 109.47373 * 180.02562 * 6 5 4 30 30 H 1.08999 * 109.47012 * 300.00450 * 6 5 4 31 31 H 1.08003 * 120.02926 * 180.02562 * 7 4 3 32 32 H 1.08006 * 119.97219 * 180.02562 * 8 7 4 33 33 H 1.08003 * 119.94190 * 180.25626 * 9 8 7 34 34 H 1.00895 * 111.00280 * 60.00348 * 13 11 10 35 35 H 1.00900 * 110.99824 * 183.95222 * 13 11 10 36 36 H 1.09004 * 109.47024 * 54.59307 * 14 11 10 37 37 H 1.08996 * 109.47058 * 294.59882 * 14 11 10 38 38 H 0.96994 * 120.00269 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2189 2.0913 -1.2004 5 8 1.9498 1.4675 -2.3774 6 6 2.1654 2.2187 -3.5739 7 6 2.6810 3.3992 -1.1970 8 6 2.9549 4.0308 0.0009 9 6 2.7636 3.3621 1.1957 10 6 2.3070 2.0569 1.1949 11 6 2.1045 1.3292 2.4990 12 1 1.1625 0.7817 2.4670 13 7 3.2115 0.3872 2.7111 14 6 2.0681 2.3403 3.6468 15 6 1.7339 1.6288 4.9325 16 1 1.5640 0.5622 4.9311 17 6 1.6439 2.3396 6.1105 18 7 1.8503 3.6384 6.1122 19 14 1.2289 1.4578 7.7041 20 1 2.2624 0.4288 7.9840 21 1 1.1937 2.4390 8.8181 22 1 -0.0985 0.8044 7.5771 23 1 -0.3634 -1.0246 -0.0794 24 1 -0.3633 0.4435 0.9270 25 1 -0.3634 0.5811 -0.8475 26 1 1.8933 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.2125 2.5158 -3.6325 29 1 1.9125 1.6052 -4.4386 30 1 1.5355 3.1081 -3.5630 31 1 2.8265 3.9234 -2.1300 32 1 3.3143 5.0493 0.0041 33 1 2.9743 3.8590 2.1313 34 1 4.0964 0.8707 2.7446 35 1 3.0662 -0.1591 3.5469 36 1 1.3094 3.0956 3.4417 37 1 3.0425 2.8198 3.7396 38 1 1.7874 4.1384 6.9410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260323454.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:49 Heat of formation + Delta-G solvation = -51.346969 kcal Electronic energy + Delta-G solvation = -18419.137179 eV Core-core repulsion = 15646.200599 eV Total energy + Delta-G solvation = -2772.936581 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.32228 -39.05876 -36.55896 -35.08296 -34.25578 -30.91938 -30.26283 -29.73612 -28.04399 -26.24055 -24.50501 -23.85481 -21.77482 -20.90751 -18.83713 -18.22558 -17.29736 -16.73822 -16.60108 -16.45427 -16.31252 -15.33597 -15.07537 -14.88566 -14.34278 -14.15429 -14.08638 -13.88733 -13.62258 -13.18032 -12.82243 -12.73450 -12.66558 -12.48564 -12.32437 -12.19731 -11.87317 -11.70408 -11.60052 -11.42644 -11.05533 -10.58346 -9.59086 -9.34574 -8.98849 -8.20558 -6.31626 0.43813 0.56776 1.40457 1.42348 1.49932 2.38980 2.46206 2.83704 3.13207 3.86694 3.89464 4.05919 4.23110 4.28689 4.35467 4.45579 4.48364 4.51722 4.61424 4.66711 4.76392 4.78412 4.89309 4.92004 5.13441 5.18148 5.25365 5.38165 5.44237 5.51958 5.58190 5.63384 5.77261 5.85668 5.93941 6.19545 6.41175 6.56439 6.74391 6.84446 7.37940 8.90719 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.034049 B = 0.005546 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.143470 B = 5047.593868 C = 5550.714577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C -0.107 4.107 4 C 0.114 3.886 5 O -0.327 6.327 6 C 0.018 3.982 7 C -0.208 4.208 8 C -0.091 4.091 9 C -0.167 4.167 10 C -0.044 4.044 11 C 0.142 3.858 12 H 0.071 0.929 13 N -0.821 5.821 14 C 0.009 3.991 15 C -0.537 4.537 16 H 0.064 0.936 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.962 3.038 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.270 1.270 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.061 0.939 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.107 0.893 34 H 0.333 0.667 35 H 0.345 0.655 36 H -0.013 1.013 37 H -0.003 1.003 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.075 -3.102 -16.910 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 C -0.108 4.108 4 C 0.069 3.931 5 O -0.241 6.241 6 C -0.076 4.076 7 C -0.227 4.227 8 C -0.109 4.109 9 C -0.185 4.185 10 C -0.045 4.045 11 C 0.031 3.969 12 H 0.089 0.911 13 N -0.348 5.348 14 C -0.030 4.030 15 C -0.575 4.575 16 H 0.082 0.918 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.787 3.213 20 H -0.190 1.190 21 H -0.213 1.213 22 H -0.195 1.195 23 H 0.090 0.910 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.080 0.920 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.158 0.842 36 H 0.005 0.995 37 H 0.016 0.984 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.776 -3.495 -17.540 17.902 hybrid contribution 0.040 1.013 2.046 2.283 sum 0.816 -2.481 -15.494 15.713 Atomic orbital electron populations 1.21651 0.94879 1.02073 1.00864 1.20374 0.95917 0.91776 1.03172 1.19227 1.04110 0.97777 0.89678 1.18885 0.96812 0.91631 0.85764 1.86039 1.82795 1.42327 1.12955 1.23324 1.01890 0.97898 0.84519 1.21411 1.06940 0.94493 0.99862 1.21115 0.98260 1.00306 0.91257 1.21238 1.03220 0.95340 0.98741 1.19747 0.96797 0.93821 0.94129 1.20149 0.94727 0.92085 0.89905 0.91105 1.59155 1.04003 1.26865 1.44805 1.19717 0.95019 0.94682 0.93584 1.21541 1.47660 0.94846 0.93436 0.91766 1.25904 0.95102 0.95477 1.02908 1.70093 1.50662 1.08018 1.28306 0.85550 0.79168 0.78230 0.78385 1.18955 1.21312 1.19465 0.90990 0.94298 0.93028 0.90992 0.90032 0.91882 0.86243 0.92001 0.82807 0.83945 0.87470 0.85617 0.84219 0.99513 0.98439 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.85 71.98 0.71 -3.27 16 2 C -0.08 -2.37 5.19 29.85 0.15 -2.21 16 3 C -0.11 -3.70 5.15 -19.77 -0.10 -3.81 16 4 C 0.11 3.48 6.66 22.51 0.15 3.63 16 5 O -0.33 -8.52 9.58 -92.43 -0.89 -9.40 16 6 C 0.02 0.29 9.81 113.37 1.11 1.40 16 7 C -0.21 -5.71 9.04 22.37 0.20 -5.51 16 8 C -0.09 -2.82 10.04 22.25 0.22 -2.59 16 9 C -0.17 -6.39 9.03 22.28 0.20 -6.18 16 10 C -0.04 -1.73 5.34 -19.88 -0.11 -1.83 16 11 C 0.14 6.02 2.10 44.17 0.09 6.12 16 12 H 0.07 3.09 6.65 -2.38 -0.02 3.07 16 13 N -0.82 -31.03 8.30 -171.80 -1.43 -32.46 16 14 C 0.01 0.44 3.35 29.85 0.10 0.54 16 15 C -0.54 -29.41 8.55 25.60 0.22 -29.20 16 16 H 0.06 3.33 7.17 -2.91 -0.02 3.31 16 17 C 0.00 0.24 5.46 84.65 0.46 0.70 16 18 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 19 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.24 7.40 -2.39 -0.02 1.22 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 2.11 7.60 -2.38 -0.02 2.10 16 27 H 0.08 2.74 6.10 -2.39 -0.01 2.73 16 28 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 29 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 31 H 0.15 3.06 6.30 -2.91 -0.02 3.04 16 32 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.11 4.59 6.08 -2.91 -0.02 4.57 16 34 H 0.33 12.47 8.99 -89.70 -0.81 11.67 16 35 H 0.34 13.05 7.93 -89.69 -0.71 12.34 16 36 H -0.01 -0.78 7.96 -2.38 -0.02 -0.80 16 37 H 0.00 -0.15 7.15 -2.39 -0.02 -0.16 16 38 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -64.27 307.05 2.97 -61.30 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.45 Total: 32.79 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: 3.42 Total: -42.20 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -1.14 Total: -88.19 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.89 Total: -9.40 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -64.27 2.97 -61.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260323454.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.952 kcal (2) G-P(sol) polarization free energy of solvation -64.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds