Wall clock time and date at job start Mon Mar 30 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46995 * 2 1 4 4 C 1.52998 * 109.47088 * 239.99992 * 2 1 3 5 5 C 1.50696 * 109.46832 * 119.99801 * 2 1 3 6 6 C 1.38288 * 119.94574 * 359.97438 * 5 2 1 7 7 C 1.38126 * 120.05386 * 179.74205 * 6 5 2 8 8 C 1.38746 * 119.94576 * 0.26200 * 7 6 5 9 9 O 1.35908 * 120.05602 * 179.97438 * 8 7 6 10 10 C 1.38706 * 119.89054 * 359.97438 * 8 7 6 11 11 C 1.50702 * 120.03181 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.46672 * 40.00730 * 11 10 8 13 13 N 1.46899 * 109.47205 * 160.00086 * 11 10 8 14 14 C 1.50697 * 109.47574 * 280.00691 * 11 10 8 15 15 H 1.08002 * 119.99591 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00273 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99703 * 359.97438 * 16 14 11 18 18 Si 1.86794 * 119.99888 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47472 * 89.99640 * 18 16 14 20 20 H 1.48504 * 109.46796 * 209.99775 * 18 16 14 21 21 H 1.48504 * 109.47205 * 329.99167 * 18 16 14 22 22 C 1.38166 * 119.94172 * 0.02562 * 10 8 7 23 23 H 1.08995 * 109.47227 * 300.00147 * 1 2 3 24 24 H 1.09001 * 109.46675 * 59.99843 * 1 2 3 25 25 H 1.09001 * 109.46825 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47322 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47181 * 300.00294 * 3 2 1 28 28 H 1.09003 * 109.47559 * 59.99870 * 3 2 1 29 29 H 1.09001 * 109.47207 * 299.99667 * 4 2 1 30 30 H 1.08993 * 109.47091 * 60.00257 * 4 2 1 31 31 H 1.08997 * 109.46797 * 180.02562 * 4 2 1 32 32 H 1.08002 * 119.97454 * 0.02855 * 6 5 2 33 33 H 1.07999 * 120.02656 * 180.27809 * 7 6 5 34 34 H 0.96694 * 114.00358 * 89.99573 * 9 8 7 35 35 H 1.00901 * 111.00030 * 296.04703 * 13 11 10 36 36 H 1.00893 * 110.99986 * 60.00425 * 13 11 10 37 37 H 0.96999 * 119.99704 * 180.02562 * 17 16 14 38 38 H 1.08007 * 119.97101 * 179.97438 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1326 -1.2350 2.1403 7 6 1.5905 -1.8912 3.2662 8 6 2.9544 -2.0190 3.4867 9 8 3.4074 -2.6638 4.5940 10 6 3.8548 -1.4876 2.5751 11 6 5.3368 -1.6252 2.8112 12 1 5.5514 -2.6190 3.2043 13 7 6.0543 -1.4346 1.5436 14 6 5.7861 -0.5845 3.8042 15 1 5.0701 0.1076 4.2223 16 6 7.1113 -0.5152 4.1783 17 7 7.9832 -1.3576 3.6688 18 14 7.6682 0.7753 5.4086 19 1 7.5663 0.2247 6.7840 20 1 9.0776 1.1503 5.1287 21 1 6.8037 1.9770 5.2911 22 6 3.3917 -0.8322 1.4505 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 1.6768 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1391 31 1 3.1300 -0.7216 -1.2489 32 1 0.0711 -1.1356 1.9680 33 1 0.8875 -2.3046 3.9741 34 1 3.5387 -3.6137 4.4699 35 1 5.8185 -2.1591 0.8821 36 1 5.8716 -0.5200 1.1587 37 1 8.9155 -1.3091 3.9323 38 1 4.0924 -0.4179 0.7406 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260564315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:17 Heat of formation + Delta-G solvation = -28.863063 kcal Electronic energy + Delta-G solvation = -18684.603638 eV Core-core repulsion = 15912.642033 eV Total energy + Delta-G solvation = -2771.961605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.75348 -37.43032 -35.23252 -34.09353 -31.65214 -29.46890 -28.44433 -27.31012 -27.13436 -25.81856 -22.81733 -22.27181 -20.26601 -18.59298 -17.65718 -16.37717 -15.71501 -15.31887 -14.62849 -14.40526 -14.13016 -14.04395 -13.72979 -13.33127 -13.02731 -12.67907 -12.37223 -12.08705 -11.86494 -11.64536 -11.60567 -11.48797 -11.18199 -10.84716 -10.78671 -10.63391 -10.57345 -10.38608 -9.91062 -9.52737 -9.24549 -8.37587 -8.13651 -7.68994 -7.08424 -5.80950 -3.93148 1.82380 1.99925 3.39180 3.44995 3.49183 4.19894 4.56951 4.77267 4.90378 4.93865 5.10217 5.41856 5.42592 5.51586 5.55871 5.61660 5.69862 5.82222 5.90730 5.92039 5.97004 6.07669 6.09943 6.16394 6.30917 6.39707 6.42940 6.48825 6.63980 6.87966 7.08878 7.13155 7.45659 7.51630 7.98490 8.25125 8.40356 8.66500 9.01571 9.19751 9.73564 11.23739 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.006859 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.334358 B = 4081.242543 C = 4467.614978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.026 4.026 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.083 4.083 6 C -0.134 4.134 7 C -0.150 4.150 8 C 0.101 3.899 9 O -0.484 6.484 10 C -0.095 4.095 11 C 0.261 3.739 12 H 0.048 0.952 13 N -0.811 5.811 14 C -0.515 4.515 15 H 0.051 0.949 16 C 0.082 3.918 17 N -0.851 5.851 18 Si 0.884 3.116 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.113 4.113 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.377 0.623 35 H 0.297 0.703 36 H 0.317 0.683 37 H 0.254 0.746 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.368 -0.287 -7.710 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 C -0.196 4.196 4 C -0.194 4.194 5 C -0.083 4.083 6 C -0.152 4.152 7 C -0.169 4.169 8 C 0.056 3.944 9 O -0.292 6.292 10 C -0.098 4.098 11 C 0.152 3.848 12 H 0.065 0.935 13 N -0.337 5.337 14 C -0.553 4.553 15 H 0.069 0.931 16 C -0.124 4.124 17 N -0.487 5.487 18 Si 0.712 3.288 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.131 4.131 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.231 0.769 35 H 0.107 0.893 36 H 0.130 0.870 37 H 0.064 0.936 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.494 0.123 -7.030 14.337 hybrid contribution -0.623 0.370 0.225 0.759 sum -13.117 0.493 -6.805 14.786 Atomic orbital electron populations 1.21936 0.94714 1.01636 1.01490 1.19429 0.95147 0.95042 0.93001 1.21887 1.01643 0.94674 1.01348 1.21870 1.01454 1.00009 0.96050 1.19671 0.93441 0.99406 0.95825 1.20765 0.98943 1.00822 0.94654 1.21331 0.95013 1.02482 0.98050 1.18357 0.90378 0.98196 0.87501 1.84914 1.87689 1.24286 1.32319 1.22138 1.01333 0.94541 0.91785 1.18033 0.79645 0.98402 0.88742 0.93451 1.59181 1.64657 1.04236 1.05635 1.20704 0.93402 1.17021 1.24213 0.93097 1.24912 0.96742 0.95410 0.95292 1.70100 1.02123 1.35390 1.41057 0.86755 0.77743 0.82399 0.81918 1.20771 1.21348 1.20118 1.20708 0.94292 1.00058 0.98056 0.92426 0.92813 0.92486 0.92110 0.92826 0.92594 0.92728 0.92787 0.92272 0.86406 0.86626 0.76887 0.89279 0.86975 0.93592 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 7.13 37.16 0.27 -1.24 16 2 C -0.03 -0.33 0.85 -155.66 -0.13 -0.46 16 3 C -0.14 -1.73 8.28 37.16 0.31 -1.43 16 4 C -0.14 -1.59 8.29 37.16 0.31 -1.28 16 5 C -0.08 -1.32 4.76 -104.60 -0.50 -1.82 16 6 C -0.13 -2.08 8.97 -39.60 -0.36 -2.44 16 7 C -0.15 -2.56 9.99 -39.43 -0.39 -2.95 16 8 C 0.10 2.02 6.67 -39.22 -0.26 1.75 16 9 O -0.48 -9.64 12.74 -19.45 -0.25 -9.88 16 10 C -0.09 -2.02 5.03 -104.47 -0.53 -2.55 16 11 C 0.26 6.49 2.51 -70.02 -0.18 6.32 16 12 H 0.05 1.29 7.86 -51.93 -0.41 0.89 16 13 N -0.81 -18.85 8.01 -6.65 -0.05 -18.90 16 14 C -0.51 -14.53 8.70 -34.44 -0.30 -14.83 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.08 2.35 5.39 -17.82 -0.10 2.25 16 17 N -0.85 -25.10 12.77 55.43 0.71 -24.39 16 18 Si 0.88 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 22 C -0.11 -2.08 7.91 -39.61 -0.31 -2.39 16 23 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 26 H 0.06 0.82 7.37 -51.93 -0.38 0.43 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.72 7.40 -51.93 -0.38 0.34 16 32 H 0.12 1.53 5.89 -52.49 -0.31 1.22 16 33 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.38 5.66 9.06 45.56 0.41 6.07 16 35 H 0.30 6.12 9.06 -39.29 -0.36 5.76 16 36 H 0.32 7.07 7.28 -39.30 -0.29 6.78 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.12 2.10 5.28 -52.48 -0.28 1.83 16 LS Contribution 307.89 15.07 4.64 4.64 Total: -1.00 -31.51 307.89 -6.99 -38.51 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -4.85 Total: 14.05 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -2.17 Total: -21.07 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.65 Total: -43.30 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.25 Total: -9.88 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.51 -6.99 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.642 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds