Wall clock time and date at job start Mon Mar 30 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46995 * 2 1 4 4 C 1.52998 * 109.47088 * 239.99992 * 2 1 3 5 5 C 1.50696 * 109.46832 * 119.99801 * 2 1 3 6 6 C 1.38288 * 119.94574 * 359.97438 * 5 2 1 7 7 C 1.38126 * 120.05386 * 179.74205 * 6 5 2 8 8 C 1.38746 * 119.94576 * 0.26200 * 7 6 5 9 9 O 1.35908 * 120.05602 * 179.97438 * 8 7 6 10 10 C 1.38706 * 119.89054 * 359.97438 * 8 7 6 11 11 C 1.50702 * 120.03181 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.46672 * 40.00730 * 11 10 8 13 13 N 1.46899 * 109.47205 * 160.00086 * 11 10 8 14 14 C 1.50697 * 109.47574 * 280.00691 * 11 10 8 15 15 H 1.08002 * 119.99591 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00273 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99703 * 359.97438 * 16 14 11 18 18 Si 1.86794 * 119.99888 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47472 * 89.99640 * 18 16 14 20 20 H 1.48504 * 109.46796 * 209.99775 * 18 16 14 21 21 H 1.48504 * 109.47205 * 329.99167 * 18 16 14 22 22 C 1.38166 * 119.94172 * 0.02562 * 10 8 7 23 23 H 1.08995 * 109.47227 * 300.00147 * 1 2 3 24 24 H 1.09001 * 109.46675 * 59.99843 * 1 2 3 25 25 H 1.09001 * 109.46825 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47322 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47181 * 300.00294 * 3 2 1 28 28 H 1.09003 * 109.47559 * 59.99870 * 3 2 1 29 29 H 1.09001 * 109.47207 * 299.99667 * 4 2 1 30 30 H 1.08993 * 109.47091 * 60.00257 * 4 2 1 31 31 H 1.08997 * 109.46797 * 180.02562 * 4 2 1 32 32 H 1.08002 * 119.97454 * 0.02855 * 6 5 2 33 33 H 1.07999 * 120.02656 * 180.27809 * 7 6 5 34 34 H 0.96694 * 114.00358 * 89.99573 * 9 8 7 35 35 H 1.00901 * 111.00030 * 296.04703 * 13 11 10 36 36 H 1.00893 * 110.99986 * 60.00425 * 13 11 10 37 37 H 0.96999 * 119.99704 * 180.02562 * 17 16 14 38 38 H 1.08007 * 119.97101 * 179.97438 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1326 -1.2350 2.1403 7 6 1.5905 -1.8912 3.2662 8 6 2.9544 -2.0190 3.4867 9 8 3.4074 -2.6638 4.5940 10 6 3.8548 -1.4876 2.5751 11 6 5.3368 -1.6252 2.8112 12 1 5.5514 -2.6190 3.2043 13 7 6.0543 -1.4346 1.5436 14 6 5.7861 -0.5845 3.8042 15 1 5.0701 0.1076 4.2223 16 6 7.1113 -0.5152 4.1783 17 7 7.9832 -1.3576 3.6688 18 14 7.6682 0.7753 5.4086 19 1 7.5663 0.2247 6.7840 20 1 9.0776 1.1503 5.1287 21 1 6.8037 1.9770 5.2911 22 6 3.3917 -0.8322 1.4505 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 1.6768 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1391 31 1 3.1300 -0.7216 -1.2489 32 1 0.0711 -1.1356 1.9680 33 1 0.8875 -2.3046 3.9741 34 1 3.5387 -3.6137 4.4699 35 1 5.8185 -2.1591 0.8821 36 1 5.8716 -0.5200 1.1587 37 1 8.9155 -1.3091 3.9323 38 1 4.0924 -0.4179 0.7406 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260564315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:16 Heat of formation + Delta-G solvation = -50.898704 kcal Electronic energy + Delta-G solvation = -18685.559175 eV Core-core repulsion = 15912.642033 eV Total energy + Delta-G solvation = -2772.917143 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.11456 -38.71001 -36.87259 -35.60777 -33.68376 -30.95548 -29.86185 -28.44512 -28.07474 -27.67428 -24.54615 -23.58199 -21.81286 -19.87715 -19.10213 -18.48468 -17.01060 -16.75070 -16.56632 -15.91760 -15.81555 -15.09373 -15.00799 -14.65420 -14.49282 -14.28229 -13.68797 -13.46517 -13.15897 -13.04134 -12.77449 -12.74575 -12.66464 -12.54075 -12.46050 -12.03158 -11.75329 -11.67818 -11.43586 -11.29631 -11.02926 -10.55785 -9.59482 -9.16459 -8.91526 -7.98098 -6.17123 0.44596 0.57697 1.39296 1.40024 1.49692 2.45090 2.84580 3.24792 3.52290 3.74331 3.88701 4.15401 4.18281 4.27421 4.35658 4.43874 4.60377 4.67896 4.81285 4.86427 4.93605 5.00832 5.03820 5.07046 5.16890 5.20555 5.24985 5.34975 5.43502 5.47248 5.59797 5.73575 5.75844 5.83546 6.08960 6.21828 6.65848 7.01880 7.08179 7.24999 7.52983 9.05041 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.006859 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.334358 B = 4081.242543 C = 4467.614978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.027 4.027 3 C -0.138 4.138 4 C -0.135 4.135 5 C -0.079 4.079 6 C -0.123 4.123 7 C -0.148 4.148 8 C 0.078 3.922 9 O -0.505 6.505 10 C -0.128 4.128 11 C 0.271 3.729 12 H 0.011 0.989 13 N -0.819 5.819 14 C -0.527 4.527 15 H 0.031 0.969 16 C 0.036 3.964 17 N -0.880 5.880 18 Si 0.943 3.057 19 H -0.278 1.278 20 H -0.279 1.279 21 H -0.275 1.275 22 C -0.117 4.117 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.393 0.607 35 H 0.312 0.688 36 H 0.322 0.678 37 H 0.255 0.745 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.675 0.571 -8.692 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.192 4.192 5 C -0.079 4.079 6 C -0.141 4.141 7 C -0.167 4.167 8 C 0.033 3.967 9 O -0.316 6.316 10 C -0.131 4.131 11 C 0.161 3.839 12 H 0.029 0.971 13 N -0.347 5.347 14 C -0.566 4.566 15 H 0.050 0.950 16 C -0.167 4.167 17 N -0.517 5.517 18 Si 0.769 3.231 19 H -0.204 1.204 20 H -0.205 1.205 21 H -0.200 1.200 22 C -0.135 4.135 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.249 0.751 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.064 0.936 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.808 0.972 -8.017 16.867 hybrid contribution 0.008 0.082 0.482 0.489 sum -14.800 1.053 -7.535 16.641 Atomic orbital electron populations 1.21931 0.92539 1.02501 1.02620 1.19527 0.96853 0.94576 0.91695 1.21894 1.00612 0.94868 1.02199 1.21860 1.00665 1.00290 0.96416 1.20066 0.92290 0.98477 0.97082 1.21220 1.00691 0.98793 0.93405 1.21582 0.93894 1.02191 0.98999 1.18624 0.91647 0.99004 0.87419 1.84844 1.88013 1.25827 1.32904 1.21842 0.99392 0.97713 0.94105 1.17577 0.82465 0.95419 0.88469 0.97076 1.58962 1.65069 1.05010 1.05624 1.20933 0.93283 1.17348 1.25064 0.95025 1.25594 0.96881 0.97274 0.96976 1.70207 1.02257 1.36796 1.42400 0.85825 0.77476 0.80012 0.79776 1.20424 1.20486 1.20031 1.20743 0.95808 0.99872 0.97083 0.92303 0.90829 0.91717 0.93811 0.90354 0.93370 0.92600 0.90553 0.93614 0.82851 0.84207 0.75105 0.87709 0.86476 0.93599 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.13 71.98 0.51 -1.85 16 2 C -0.03 -0.60 0.85 -52.93 -0.05 -0.64 16 3 C -0.14 -3.16 8.28 71.98 0.60 -2.57 16 4 C -0.14 -2.78 8.29 71.98 0.60 -2.18 16 5 C -0.08 -2.36 4.76 -19.85 -0.09 -2.45 16 6 C -0.12 -3.48 8.97 22.26 0.20 -3.28 16 7 C -0.15 -4.79 9.99 22.36 0.22 -4.57 16 8 C 0.08 3.14 6.67 22.50 0.15 3.29 16 9 O -0.51 -20.69 12.74 -92.51 -1.18 -21.87 16 10 C -0.13 -5.56 5.03 -19.77 -0.10 -5.66 16 11 C 0.27 13.99 2.51 43.42 0.11 14.10 16 12 H 0.01 0.66 7.86 -2.38 -0.02 0.64 16 13 N -0.82 -39.31 8.01 -174.95 -1.40 -40.71 16 14 C -0.53 -30.77 8.70 25.60 0.22 -30.54 16 15 H 0.03 1.92 7.74 -2.91 -0.02 1.89 16 16 C 0.04 2.08 5.39 84.65 0.46 2.54 16 17 N -0.88 -53.08 12.77 21.45 0.27 -52.81 16 18 Si 0.94 46.10 29.54 68.60 2.03 48.12 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 22 C -0.12 -4.30 7.91 22.25 0.18 -4.13 16 23 H 0.06 1.00 7.51 -2.39 -0.02 0.99 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.02 7.51 -2.39 -0.02 1.00 16 26 H 0.04 1.13 7.37 -2.39 -0.02 1.11 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 1.05 7.40 -2.39 -0.02 1.03 16 32 H 0.15 3.25 5.89 -2.91 -0.02 3.23 16 33 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 34 H 0.39 12.33 9.06 -74.06 -0.67 11.66 16 35 H 0.31 13.23 9.06 -89.69 -0.81 12.42 16 36 H 0.32 14.77 7.28 -89.70 -0.65 14.11 16 37 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.12 4.21 5.28 -2.91 -0.02 4.19 16 Total: -1.00 -68.85 307.89 1.67 -67.18 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -1.05 Total: 38.02 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: 3.00 Total: -37.94 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -1.13 Total: -93.51 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -1.18 Total: -21.87 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -68.85 1.67 -67.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260564315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.280 kcal (2) G-P(sol) polarization free energy of solvation -68.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds