Wall clock time and date at job start Mon Mar 30 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47313 * 2 1 4 4 C 1.50704 * 109.47353 * 119.99819 * 2 1 3 5 5 C 1.38289 * 119.94416 * 300.00306 * 4 2 1 6 6 C 1.38126 * 120.05753 * 179.97438 * 5 4 2 7 7 C 1.38752 * 119.93964 * 359.97438 * 6 5 4 8 8 O 1.35904 * 120.05337 * 180.02562 * 7 6 5 9 9 C 1.38712 * 119.89340 * 0.02562 * 7 6 5 10 10 C 1.50699 * 120.02958 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47102 * 0.02562 * 10 9 7 12 12 C 1.50701 * 109.47177 * 120.00139 * 10 9 7 13 13 H 1.08001 * 119.99788 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00097 * 179.97438 * 12 10 9 15 15 N 1.31517 * 120.00175 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99941 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47160 * 90.00224 * 16 14 12 18 18 H 1.48500 * 109.47137 * 210.00153 * 16 14 12 19 19 H 1.48501 * 109.47188 * 330.00377 * 16 14 12 20 20 C 1.53002 * 109.47065 * 239.99968 * 10 9 7 21 21 N 1.46906 * 109.47053 * 65.00331 * 20 10 9 22 22 C 1.38173 * 119.94156 * 0.25389 * 9 7 6 23 23 H 1.09003 * 109.46856 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47105 * 299.99869 * 1 2 3 25 25 H 1.09000 * 109.47148 * 59.99779 * 1 2 3 26 26 H 1.08997 * 109.47190 * 239.99599 * 2 1 3 27 27 H 1.08997 * 109.47123 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46698 * 300.00181 * 3 2 1 29 29 H 1.09000 * 109.46928 * 60.00023 * 3 2 1 30 30 H 1.08000 * 119.96795 * 359.97438 * 5 4 2 31 31 H 1.07990 * 120.02936 * 179.97438 * 6 5 4 32 32 H 0.96700 * 113.99666 * 269.98098 * 8 7 6 33 33 H 0.96996 * 120.00140 * 179.97438 * 15 14 12 34 34 H 1.08992 * 109.47056 * 305.00001 * 20 10 9 35 35 H 1.09004 * 109.47006 * 185.00118 * 20 10 9 36 36 H 1.00897 * 110.99706 * 179.97438 * 21 20 10 37 37 H 1.00899 * 110.99484 * 303.95475 * 21 20 10 38 38 H 1.07999 * 119.96952 * 179.74098 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6976 -0.2369 2.4859 6 6 2.1563 -0.8865 3.6153 7 6 2.9533 -2.0153 3.4893 8 8 3.4055 -2.6565 4.5989 9 6 3.2877 -2.4882 2.2289 10 6 4.1536 -3.7136 2.0885 11 1 4.4171 -4.0876 3.0778 12 6 3.3993 -4.7780 1.3341 13 1 2.3935 -4.5861 0.9903 14 6 3.9933 -5.9963 1.0818 15 7 5.2182 -6.2298 1.5000 16 14 3.0585 -7.3154 0.1461 17 1 3.3175 -7.1680 -1.3086 18 1 3.5109 -8.6563 0.5961 19 1 1.6037 -7.1705 0.4070 20 6 5.4282 -3.3524 1.3230 21 7 6.2228 -2.4038 2.1149 22 6 2.8311 -1.8315 1.1023 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.0769 0.6415 2.5834 31 1 1.8950 -0.5161 4.5955 32 1 4.2582 -2.3328 4.9202 33 1 5.6360 -7.0871 1.3229 34 1 5.1624 -2.8965 0.3694 35 1 6.0125 -4.2550 1.1439 36 1 7.0707 -2.1499 1.6306 37 1 5.6808 -1.5857 2.3492 38 1 3.0946 -2.1968 0.1208 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260670123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:09 Heat of formation + Delta-G solvation = -41.973940 kcal Electronic energy + Delta-G solvation = -18651.162982 eV Core-core repulsion = 15878.632847 eV Total energy + Delta-G solvation = -2772.530136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.53646 -36.87819 -35.39905 -33.85257 -32.17657 -30.71866 -28.64872 -27.06811 -27.03971 -23.90861 -22.66840 -22.34949 -20.37778 -18.70015 -17.58249 -16.42155 -15.84352 -15.04747 -14.83953 -14.66310 -14.17751 -13.88579 -13.40468 -13.34882 -13.24953 -12.79912 -12.43117 -12.20292 -11.96552 -11.59320 -11.46544 -11.14697 -10.97464 -10.76726 -10.70976 -10.59112 -10.36111 -10.25270 -10.04062 -9.28223 -9.14045 -8.44293 -8.09111 -7.72511 -7.58523 -6.01187 -4.08098 1.86981 2.05124 3.29443 3.36704 3.41080 4.24175 4.44817 4.89321 5.00508 5.03200 5.25692 5.35045 5.49222 5.59092 5.68319 5.69368 5.71922 5.89182 5.93073 6.00240 6.08093 6.21953 6.35445 6.41505 6.53493 6.57212 6.80459 6.90116 6.95769 7.17122 7.22133 7.52223 7.65158 7.86574 7.96794 8.20478 8.32887 8.39147 8.44718 8.95748 9.55829 11.03870 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.007646 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.065321 B = 3661.377031 C = 4203.068421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.141 4.141 4 C -0.094 4.094 5 C -0.126 4.126 6 C -0.151 4.151 7 C 0.092 3.908 8 O -0.492 6.492 9 C -0.054 4.054 10 C 0.082 3.918 11 H 0.055 0.945 12 C -0.507 4.507 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.885 5.885 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.067 3.933 21 N -0.852 5.852 22 C -0.100 4.100 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.382 0.618 33 H 0.261 0.739 34 H -0.003 1.003 35 H 0.107 0.893 36 H 0.321 0.679 37 H 0.318 0.682 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.882 13.112 -1.103 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.094 4.094 5 C -0.145 4.145 6 C -0.169 4.169 7 C 0.048 3.952 8 O -0.301 6.301 9 C -0.054 4.054 10 C 0.063 3.937 11 H 0.073 0.927 12 C -0.546 4.546 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.523 5.523 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.062 4.062 21 N -0.379 5.379 22 C -0.118 4.118 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.236 0.764 33 H 0.071 0.929 34 H 0.015 0.985 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.235 12.033 -0.618 12.771 hybrid contribution -0.237 0.103 -1.225 1.251 sum -4.471 12.136 -1.842 13.064 Atomic orbital electron populations 1.21837 0.94809 1.02027 1.01225 1.20062 0.95599 0.95621 0.96010 1.21835 1.01137 0.95516 1.01297 1.19764 0.98986 0.96545 0.94107 1.20521 1.01959 1.00302 0.91668 1.21248 1.01186 0.95958 0.98518 1.18405 0.98313 0.92146 0.86352 1.84823 1.40761 1.61937 1.42547 1.20973 0.96491 0.96837 0.91138 1.17837 0.89467 0.87933 0.98440 0.92745 1.21061 1.00270 0.97599 1.35623 0.92507 1.24971 0.95014 0.98147 0.95788 1.69879 1.12854 1.23639 1.45969 0.86585 0.80316 0.81196 0.79917 1.20716 1.21123 1.19874 1.22151 0.96513 0.95551 0.92034 1.58997 1.09328 1.18424 1.51121 1.20899 0.97498 0.94412 0.98971 0.92445 0.92713 0.92919 0.90711 0.92696 0.92919 0.92692 0.87030 0.86667 0.76369 0.92876 0.98477 0.87483 0.86899 0.87163 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.01 37.16 0.33 -1.36 16 2 C -0.05 -0.72 3.09 -91.77 -0.28 -1.01 16 3 C -0.14 -1.57 9.01 37.16 0.33 -1.24 16 4 C -0.09 -1.53 4.78 -104.60 -0.50 -2.04 16 5 C -0.13 -1.97 8.70 -39.60 -0.34 -2.31 16 6 C -0.15 -2.54 9.99 -39.43 -0.39 -2.93 16 7 C 0.09 1.82 6.68 -39.22 -0.26 1.56 16 8 O -0.49 -9.62 12.27 -19.44 -0.24 -9.86 16 9 C -0.05 -1.15 3.78 -104.47 -0.39 -1.55 16 10 C 0.08 2.04 2.12 -92.92 -0.20 1.84 16 11 H 0.05 1.53 6.99 -51.93 -0.36 1.16 16 12 C -0.51 -13.92 8.25 -34.44 -0.28 -14.21 16 13 H 0.06 1.58 7.61 -52.49 -0.40 1.18 16 14 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 15 N -0.88 -25.14 11.29 55.43 0.63 -24.51 16 16 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.07 1.56 5.98 -3.82 -0.02 1.54 16 21 N -0.85 -16.58 9.62 -10.37 -0.10 -16.68 16 22 C -0.10 -1.94 8.28 -39.60 -0.33 -2.27 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.62 7.38 -51.93 -0.38 0.23 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.58 7.38 -51.93 -0.38 0.20 16 30 H 0.11 1.45 7.09 -52.49 -0.37 1.08 16 31 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.38 5.85 9.06 45.56 0.41 6.27 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.00 -0.07 7.21 -51.93 -0.37 -0.44 16 35 H 0.11 2.84 5.95 -51.93 -0.31 2.53 16 36 H 0.32 5.50 9.08 -39.29 -0.36 5.14 16 37 H 0.32 5.76 8.07 -39.29 -0.32 5.44 16 38 H 0.12 2.43 7.42 -52.49 -0.39 2.04 16 LS Contribution 309.06 15.07 4.66 4.66 Total: -1.00 -29.58 309.06 -7.40 -36.98 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -4.89 Total: 15.39 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -2.44 Total: -22.34 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.53 Total: -41.19 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -0.24 Total: -9.86 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.58 -7.40 -36.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260670123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.993 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds