Wall clock time and date at job start Mon Mar 30 2020 06:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47119 * 2 1 4 4 C 1.52998 * 109.46899 * 120.00566 * 2 1 3 5 5 O 1.42903 * 109.46784 * 174.99809 * 4 2 1 6 6 C 1.35899 * 116.99861 * 179.97438 * 5 4 2 7 7 C 1.38736 * 120.05216 * 179.97438 * 6 5 4 8 8 C 1.38147 * 119.93920 * 179.97438 * 7 6 5 9 9 C 1.38262 * 120.06061 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.94720 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.46382 * 20.00640 * 10 9 8 12 12 N 1.46905 * 109.46439 * 140.00334 * 10 9 8 13 13 C 1.50696 * 109.47168 * 260.00305 * 10 9 8 14 14 H 1.07999 * 120.00202 * 359.97438 * 13 10 9 15 15 C 1.37884 * 119.99746 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99573 * 0.27650 * 15 13 10 17 17 Si 1.86800 * 119.99781 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47364 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.46883 * 120.00040 * 17 15 13 20 20 H 1.48497 * 109.46870 * 239.99850 * 17 15 13 21 21 C 1.38268 * 120.10857 * 0.27846 * 9 8 7 22 22 C 1.38146 * 120.05825 * 359.44728 * 21 9 8 23 23 H 1.09005 * 109.46408 * 299.99791 * 1 2 3 24 24 H 1.08999 * 109.47256 * 59.99734 * 1 2 3 25 25 H 1.08991 * 109.47240 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46408 * 240.00209 * 2 1 3 27 27 H 1.08995 * 109.46935 * 60.00380 * 3 2 1 28 28 H 1.09004 * 109.46853 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47273 * 300.00255 * 3 2 1 30 30 H 1.08997 * 109.47567 * 54.99611 * 4 2 1 31 31 H 1.09004 * 109.46598 * 294.99194 * 4 2 1 32 32 H 1.07998 * 120.03078 * 359.95297 * 7 6 5 33 33 H 1.08001 * 119.97165 * 180.02562 * 8 7 6 34 34 H 1.00899 * 110.99919 * 296.04096 * 12 10 9 35 35 H 1.00895 * 111.00194 * 60.00786 * 12 10 9 36 36 H 0.97001 * 120.00651 * 359.71956 * 16 15 13 37 37 H 1.08003 * 119.97203 * 179.70557 * 21 9 8 38 38 H 1.08002 * 120.03486 * 180.28256 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 3.4642 -0.8239 1.1919 6 6 4.0806 -1.4426 2.2332 7 6 5.4613 -1.5775 2.2424 8 6 6.0855 -2.2063 3.3024 9 6 5.3355 -2.7005 4.3536 10 6 6.0191 -3.3865 5.5082 11 1 7.0700 -3.0982 5.5314 12 7 5.3738 -2.9874 6.7662 13 6 5.9114 -4.8802 5.3402 14 1 5.3988 -5.2916 4.4832 15 6 6.4663 -5.7215 6.2811 16 7 7.0848 -5.2204 7.3280 17 14 6.3322 -7.5731 6.0732 18 1 5.5874 -7.8784 4.8252 19 1 7.6931 -8.1622 5.9949 20 1 5.6089 -8.1504 7.2345 21 6 3.9589 -2.5718 4.3441 22 6 3.3303 -1.9389 3.2893 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6768 1.9562 0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6054 -1.7199 1.2951 31 1 1.7517 -0.1584 2.1369 32 1 6.0476 -1.1917 1.4216 33 1 7.1604 -2.3113 3.3103 34 1 5.4886 -1.9990 6.9338 35 1 4.3980 -3.2438 6.7693 36 1 7.1541 -4.2589 7.4361 37 1 3.3748 -2.9628 5.1642 38 1 2.2553 -1.8345 3.2846 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309157748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:25 Heat of formation + Delta-G solvation = -34.665482 kcal Electronic energy + Delta-G solvation = -17762.739710 eV Core-core repulsion = 14990.526493 eV Total energy + Delta-G solvation = -2772.213217 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.87890 -37.83290 -35.57322 -34.24918 -31.32924 -30.52307 -28.85732 -27.42283 -26.60474 -25.31039 -22.77883 -22.07231 -20.30913 -20.13314 -17.92222 -16.80220 -16.27134 -15.72569 -14.93787 -14.62719 -14.40958 -14.08706 -13.92308 -13.62700 -13.19818 -12.91875 -12.71944 -12.58480 -12.45589 -12.05182 -11.74723 -11.41290 -11.34062 -11.11119 -10.93814 -10.69188 -10.53241 -10.33757 -10.15438 -10.04717 -8.74518 -8.52079 -8.30122 -7.60349 -7.33986 -6.15231 -3.98416 1.82857 1.99732 3.33191 3.49399 3.52771 3.66504 4.29937 4.55576 4.60244 4.63571 4.84700 5.15580 5.22091 5.23299 5.30921 5.36233 5.43450 5.47935 5.58044 5.66386 5.75276 5.78617 5.87069 5.98175 5.99497 6.07154 6.14039 6.20459 6.44746 6.74766 6.90763 6.98728 7.25943 7.43797 7.76528 8.02091 8.32882 8.68935 8.78916 9.08618 9.85173 11.24339 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.038426 B = 0.004275 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.498106 B = 6548.026895 C = 6742.844117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.065 3.935 5 O -0.320 6.320 6 C 0.100 3.900 7 C -0.152 4.152 8 C -0.085 4.085 9 C -0.099 4.099 10 C 0.239 3.761 11 H 0.037 0.963 12 N -0.830 5.830 13 C -0.607 4.607 14 H 0.046 0.954 15 C 0.037 3.963 16 N -0.893 5.893 17 Si 1.069 2.931 18 H -0.292 1.292 19 H -0.288 1.288 20 H -0.288 1.288 21 C -0.083 4.083 22 C -0.207 4.207 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.302 0.698 35 H 0.325 0.675 36 H 0.290 0.710 37 H 0.118 0.882 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.716 10.943 -12.252 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.010 4.010 5 O -0.234 6.234 6 C 0.056 3.944 7 C -0.171 4.171 8 C -0.104 4.104 9 C -0.102 4.102 10 C 0.130 3.870 11 H 0.055 0.945 12 N -0.357 5.357 13 C -0.646 4.646 14 H 0.065 0.935 15 C -0.173 4.173 16 N -0.527 5.527 17 Si 0.898 3.102 18 H -0.218 1.218 19 H -0.215 1.215 20 H -0.215 1.215 21 C -0.102 4.102 22 C -0.226 4.226 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.103 0.897 37 H 0.136 0.864 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.704 9.094 -11.343 17.479 hybrid contribution -1.326 1.914 -1.240 2.638 sum -11.030 11.008 -12.583 20.029 Atomic orbital electron populations 1.21783 0.94008 1.02193 1.02330 1.21119 0.95651 0.96950 0.97643 1.21808 1.02038 0.94990 1.01486 1.22789 0.79595 1.00045 0.98601 1.85977 1.20876 1.74437 1.42138 1.18826 0.92225 0.95829 0.87528 1.20336 0.91251 1.04988 1.00487 1.20918 0.99914 0.96642 0.92877 1.21413 0.93888 0.95966 0.98920 1.18323 0.92781 0.95043 0.80881 0.94534 1.59461 1.19282 1.18371 1.38585 1.21752 1.42430 0.89155 1.11251 0.93529 1.25629 0.93125 1.05687 0.92817 1.70490 1.37477 1.17679 1.27072 0.83578 0.76301 0.75057 0.75264 1.21803 1.21484 1.21501 1.20751 0.94642 0.97273 0.97521 1.21110 0.99186 1.05902 0.96375 0.92372 0.91855 0.92342 0.90188 0.92786 0.91795 0.92676 0.92370 0.92408 0.86164 0.85841 0.88808 0.86216 0.89699 0.86366 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 2 C -0.10 -0.89 3.16 -90.62 -0.29 -1.18 16 3 C -0.15 -1.32 9.09 37.16 0.34 -0.98 16 4 C 0.07 0.77 4.12 37.16 0.15 0.92 16 5 O -0.32 -4.85 9.67 -19.42 -0.19 -5.04 16 6 C 0.10 1.72 6.69 -39.21 -0.26 1.46 16 7 C -0.15 -2.68 9.99 -39.43 -0.39 -3.07 16 8 C -0.08 -1.65 9.66 -39.61 -0.38 -2.04 16 9 C -0.10 -2.12 4.88 -104.60 -0.51 -2.63 16 10 C 0.24 5.88 2.47 -70.01 -0.17 5.71 16 11 H 0.04 0.97 7.87 -51.93 -0.41 0.56 16 12 N -0.83 -18.99 7.61 -6.65 -0.05 -19.04 16 13 C -0.61 -16.98 8.70 -34.44 -0.30 -17.28 16 14 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 15 C 0.04 1.06 5.39 -17.82 -0.10 0.96 16 16 N -0.89 -27.00 13.50 55.43 0.75 -26.25 16 17 Si 1.07 25.56 29.90 -169.99 -5.08 20.48 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 C -0.08 -1.62 9.28 -39.60 -0.37 -1.99 16 22 C -0.21 -3.55 9.04 -39.43 -0.36 -3.91 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.66 7.82 -51.93 -0.41 0.26 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 31 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 32 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 33 H 0.12 2.28 8.03 -52.49 -0.42 1.86 16 34 H 0.30 6.11 9.06 -39.29 -0.36 5.76 16 35 H 0.32 7.15 7.34 -39.29 -0.29 6.86 16 36 H 0.29 8.76 6.39 -40.82 -0.26 8.50 16 37 H 0.12 2.23 6.67 -52.48 -0.35 1.88 16 38 H 0.12 1.69 6.30 -52.49 -0.33 1.36 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -30.79 313.13 -7.93 -38.72 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -5.78 Total: 11.16 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -2.30 Total: -24.74 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.70 Total: -45.29 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.19 Total: -5.04 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.79 -7.93 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309157748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.053 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds