Wall clock time and date at job start Mon Mar 30 2020 06:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47119 * 2 1 4 4 C 1.52998 * 109.46899 * 120.00566 * 2 1 3 5 5 O 1.42903 * 109.46784 * 174.99809 * 4 2 1 6 6 C 1.35899 * 116.99861 * 179.97438 * 5 4 2 7 7 C 1.38736 * 120.05216 * 179.97438 * 6 5 4 8 8 C 1.38147 * 119.93920 * 179.97438 * 7 6 5 9 9 C 1.38262 * 120.06061 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.94720 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.46382 * 20.00640 * 10 9 8 12 12 N 1.46905 * 109.46439 * 140.00334 * 10 9 8 13 13 C 1.50696 * 109.47168 * 260.00305 * 10 9 8 14 14 H 1.07999 * 120.00202 * 359.97438 * 13 10 9 15 15 C 1.37884 * 119.99746 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99573 * 0.27650 * 15 13 10 17 17 Si 1.86800 * 119.99781 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.47364 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.46883 * 120.00040 * 17 15 13 20 20 H 1.48497 * 109.46870 * 239.99850 * 17 15 13 21 21 C 1.38268 * 120.10857 * 0.27846 * 9 8 7 22 22 C 1.38146 * 120.05825 * 359.44728 * 21 9 8 23 23 H 1.09005 * 109.46408 * 299.99791 * 1 2 3 24 24 H 1.08999 * 109.47256 * 59.99734 * 1 2 3 25 25 H 1.08991 * 109.47240 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46408 * 240.00209 * 2 1 3 27 27 H 1.08995 * 109.46935 * 60.00380 * 3 2 1 28 28 H 1.09004 * 109.46853 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47273 * 300.00255 * 3 2 1 30 30 H 1.08997 * 109.47567 * 54.99611 * 4 2 1 31 31 H 1.09004 * 109.46598 * 294.99194 * 4 2 1 32 32 H 1.07998 * 120.03078 * 359.95297 * 7 6 5 33 33 H 1.08001 * 119.97165 * 180.02562 * 8 7 6 34 34 H 1.00899 * 110.99919 * 296.04096 * 12 10 9 35 35 H 1.00895 * 111.00194 * 60.00786 * 12 10 9 36 36 H 0.97001 * 120.00651 * 359.71956 * 16 15 13 37 37 H 1.08003 * 119.97203 * 179.70557 * 21 9 8 38 38 H 1.08002 * 120.03486 * 180.28256 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 3.4642 -0.8239 1.1919 6 6 4.0806 -1.4426 2.2332 7 6 5.4613 -1.5775 2.2424 8 6 6.0855 -2.2063 3.3024 9 6 5.3355 -2.7005 4.3536 10 6 6.0191 -3.3865 5.5082 11 1 7.0700 -3.0982 5.5314 12 7 5.3738 -2.9874 6.7662 13 6 5.9114 -4.8802 5.3402 14 1 5.3988 -5.2916 4.4832 15 6 6.4663 -5.7215 6.2811 16 7 7.0848 -5.2204 7.3280 17 14 6.3322 -7.5731 6.0732 18 1 5.5874 -7.8784 4.8252 19 1 7.6931 -8.1622 5.9949 20 1 5.6089 -8.1504 7.2345 21 6 3.9589 -2.5718 4.3441 22 6 3.3303 -1.9389 3.2893 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6768 1.9562 0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6054 -1.7199 1.2951 31 1 1.7517 -0.1584 2.1369 32 1 6.0476 -1.1917 1.4216 33 1 7.1604 -2.3113 3.3103 34 1 5.4886 -1.9990 6.9338 35 1 4.3980 -3.2438 6.7693 36 1 7.1541 -4.2589 7.4361 37 1 3.3748 -2.9628 5.1642 38 1 2.2553 -1.8345 3.2846 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309157748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:24 Heat of formation + Delta-G solvation = -53.382377 kcal Electronic energy + Delta-G solvation = -17763.551336 eV Core-core repulsion = 14990.526493 eV Total energy + Delta-G solvation = -2773.024843 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.18665 -39.19603 -36.73805 -35.78037 -33.32455 -31.97682 -30.38028 -28.06999 -27.79720 -27.11940 -24.51547 -23.46905 -21.85871 -21.08638 -19.19974 -18.85909 -17.40545 -16.94430 -16.52641 -16.27243 -15.60148 -15.52973 -15.31867 -14.99314 -14.53261 -14.36051 -14.10589 -13.85979 -13.42328 -13.29853 -13.01327 -12.98212 -12.57827 -12.23783 -12.11206 -12.03687 -11.92905 -11.90287 -11.58222 -11.49998 -10.73606 -10.47366 -9.96404 -9.41058 -8.90926 -8.36885 -6.23956 0.38030 0.51666 1.55606 1.64414 1.80378 2.21339 2.61893 2.84540 3.32039 3.73655 3.83255 3.89517 3.96174 4.10915 4.20424 4.22840 4.32625 4.47006 4.48117 4.53761 4.68004 4.71588 4.80004 4.93163 4.96613 4.98809 5.16314 5.17380 5.29475 5.36080 5.38288 5.43493 5.79831 5.81017 5.96470 6.23825 6.47459 6.68869 6.78653 7.05407 7.67135 8.98493 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.038426 B = 0.004275 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.498106 B = 6548.026895 C = 6742.844117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.146 4.146 4 C 0.055 3.945 5 O -0.323 6.323 6 C 0.108 3.892 7 C -0.153 4.153 8 C -0.095 4.095 9 C -0.128 4.128 10 C 0.243 3.757 11 H 0.007 0.993 12 N -0.835 5.835 13 C -0.615 4.615 14 H 0.033 0.967 15 C -0.011 4.011 16 N -0.920 5.920 17 Si 1.114 2.886 18 H -0.280 1.280 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.089 4.089 22 C -0.202 4.202 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.142 0.858 33 H 0.123 0.877 34 H 0.317 0.683 35 H 0.330 0.670 36 H 0.279 0.721 37 H 0.119 0.881 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.599 11.394 -13.771 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.020 4.020 5 O -0.238 6.238 6 C 0.063 3.937 7 C -0.172 4.172 8 C -0.113 4.113 9 C -0.130 4.130 10 C 0.134 3.866 11 H 0.025 0.975 12 N -0.364 5.364 13 C -0.653 4.653 14 H 0.051 0.949 15 C -0.215 4.215 16 N -0.556 5.556 17 Si 0.938 3.062 18 H -0.206 1.206 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.107 4.107 22 C -0.220 4.220 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.601 9.569 -12.877 19.798 hybrid contribution -0.818 1.905 -0.881 2.252 sum -12.419 11.474 -13.758 21.798 Atomic orbital electron populations 1.21771 0.92178 1.02734 1.03264 1.21154 0.97023 0.96671 0.96241 1.21809 1.00918 0.95073 1.02488 1.23144 0.77586 1.00927 1.00330 1.86002 1.22987 1.73658 1.41135 1.18941 0.92264 0.94747 0.87757 1.20520 0.91992 1.04347 1.00337 1.20969 1.00045 0.97144 0.93170 1.21117 0.94921 0.98212 0.98783 1.17992 0.91792 0.93842 0.83001 0.97524 1.59218 1.19480 1.19644 1.38062 1.22028 1.41558 0.91288 1.10439 0.94851 1.26966 0.92433 1.09748 0.92343 1.70608 1.39510 1.17033 1.28401 0.82969 0.76825 0.70563 0.75844 1.20553 1.20658 1.20727 1.20788 0.93815 0.97725 0.98415 1.21334 1.00670 1.04695 0.95328 0.91858 0.90557 0.92025 0.90526 0.92449 0.93511 0.91099 0.91811 0.91560 0.84020 0.85905 0.87136 0.85655 0.90926 0.86309 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 71.99 0.66 -0.97 16 2 C -0.09 -1.48 3.16 -10.79 -0.03 -1.52 16 3 C -0.15 -2.28 9.09 71.98 0.65 -1.62 16 4 C 0.05 1.13 4.12 71.98 0.30 1.43 16 5 O -0.32 -9.03 9.67 -92.42 -0.89 -9.92 16 6 C 0.11 3.49 6.69 22.51 0.15 3.64 16 7 C -0.15 -5.20 9.99 22.37 0.22 -4.98 16 8 C -0.09 -3.70 9.66 22.25 0.22 -3.48 16 9 C -0.13 -5.51 4.88 -19.85 -0.10 -5.61 16 10 C 0.24 12.32 2.47 43.42 0.11 12.42 16 11 H 0.01 0.38 7.87 -2.39 -0.02 0.37 16 12 N -0.84 -38.96 7.61 -174.95 -1.33 -40.29 16 13 C -0.61 -34.99 8.70 25.60 0.22 -34.76 16 14 H 0.03 1.94 7.74 -2.91 -0.02 1.92 16 15 C -0.01 -0.65 5.39 84.66 0.46 -0.20 16 16 N -0.92 -56.60 13.50 21.45 0.29 -56.32 16 17 Si 1.11 51.56 29.90 68.60 2.05 53.62 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 C -0.09 -3.39 9.28 22.25 0.21 -3.18 16 22 C -0.20 -6.50 9.04 22.37 0.20 -6.29 16 23 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 24 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.89 7.82 -2.38 -0.02 0.87 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 1.27 7.67 -2.39 -0.02 1.25 16 31 H 0.07 1.28 7.66 -2.38 -0.02 1.26 16 32 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 33 H 0.12 4.67 8.03 -2.91 -0.02 4.64 16 34 H 0.32 13.05 9.06 -89.69 -0.81 12.24 16 35 H 0.33 14.67 7.34 -89.70 -0.66 14.01 16 36 H 0.28 17.34 6.39 -92.71 -0.59 16.74 16 37 H 0.12 4.42 6.67 -2.91 -0.02 4.40 16 38 H 0.15 3.76 6.30 -2.91 -0.02 3.74 16 Total: -1.00 -66.04 313.13 3.14 -62.90 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: -0.24 Total: 35.14 kcal Atomic # 6 Polarization: -48.40 SS G_CDS: 3.27 Total: -45.13 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -1.04 Total: -96.61 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.89 Total: -9.92 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.62 kcal Total: -66.04 3.14 -62.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309157748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.520 kcal (2) G-P(sol) polarization free energy of solvation -66.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds