Wall clock time and date at job start Mon Mar 30 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99944 * 2 1 4 4 C 1.53002 * 109.47071 * 123.14060 * 3 2 1 5 5 C 1.53000 * 109.46911 * 295.18115 * 4 3 2 6 6 C 1.50701 * 109.47213 * 294.28679 * 5 4 3 7 7 C 1.30995 * 119.99745 * 125.00030 * 6 5 4 8 8 C 1.50698 * 109.47152 * 55.18207 * 4 3 2 9 9 O 1.21287 * 119.99965 * 239.99861 * 8 4 3 10 10 N 1.34773 * 120.00318 * 60.00221 * 8 4 3 11 11 C 1.47579 * 134.49530 * 179.97438 * 10 8 4 12 12 C 1.53946 * 86.11782 * 204.63591 * 11 10 8 13 13 C 1.50696 * 113.74477 * 221.93894 * 12 11 10 14 14 H 1.08006 * 119.99729 * 358.08049 * 13 12 11 15 15 C 1.37875 * 120.00417 * 178.07426 * 13 12 11 16 16 N 1.31509 * 119.99892 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00281 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47311 * 89.99967 * 17 15 13 19 19 H 1.48497 * 109.47098 * 210.00331 * 17 15 13 20 20 H 1.48497 * 109.47003 * 329.99817 * 17 15 13 21 21 C 1.47937 * 134.49803 * 359.97438 * 10 8 4 22 22 H 1.07997 * 119.99962 * 179.97438 * 1 2 3 23 23 H 1.08005 * 119.99926 * 0.02562 * 1 2 3 24 24 H 1.08005 * 119.99926 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.47336 * 3.13598 * 3 2 1 26 26 H 1.09004 * 109.46940 * 243.13355 * 3 2 1 27 27 H 1.09003 * 109.47128 * 175.18361 * 4 3 2 28 28 H 1.09000 * 109.47255 * 54.28901 * 5 4 3 29 29 H 1.09001 * 109.47162 * 174.28985 * 5 4 3 30 30 H 1.07994 * 119.99964 * 304.99961 * 6 5 4 31 31 H 1.07996 * 120.00615 * 0.02562 * 7 6 5 32 32 H 1.08004 * 119.99791 * 180.02562 * 7 6 5 33 33 H 1.08999 * 113.76879 * 90.33867 * 11 10 8 34 34 H 1.08995 * 113.77041 * 318.93797 * 11 10 8 35 35 H 1.09003 * 113.74307 * 90.74049 * 12 11 10 36 36 H 0.97003 * 120.00181 * 179.97438 * 16 15 13 37 37 H 1.08995 * 113.86678 * 41.10274 * 21 10 8 38 38 H 1.08998 * 113.76516 * 269.60497 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0014 1.3525 1.2079 5 6 2.1750 1.3577 2.4954 6 6 1.3799 2.6354 2.5768 7 6 0.0799 2.5891 2.7310 8 6 3.9008 0.1434 1.1932 9 8 3.8826 -0.6373 2.1212 10 7 4.7255 -0.0705 0.1489 11 6 5.7123 -1.1132 -0.1932 12 6 6.3814 -0.0432 -1.0749 13 6 6.8402 -0.5604 -2.4139 14 1 6.7139 -1.6040 -2.6618 15 6 7.4213 0.2986 -3.3225 16 7 7.5755 1.5692 -3.0205 17 14 7.9894 -0.3425 -4.9825 18 1 6.8794 -0.2310 -5.9625 19 1 9.1474 0.4594 -5.4528 20 1 8.3933 -1.7655 -4.8518 21 6 5.0052 0.6457 -1.1150 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9354 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3566 2.1328 0.0562 26 1 2.6473 1.3875 -0.9168 27 1 3.6079 2.2570 1.1617 28 1 1.4948 0.5060 2.4941 29 1 2.8414 1.2891 3.3552 30 1 1.8820 3.5890 2.5081 31 1 -0.4222 1.6355 2.8001 32 1 -0.4899 3.5048 2.7889 33 1 5.2930 -1.9470 -0.7563 34 1 6.3241 -1.4327 0.6503 35 1 7.1469 0.5356 -0.5579 36 1 7.9846 2.1734 -3.6596 37 1 5.0529 1.7292 -1.0067 38 1 4.3787 0.3273 -1.9482 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598032978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:21 Heat of formation + Delta-G solvation = 21.004444 kcal Electronic energy + Delta-G solvation = -18312.495919 eV Core-core repulsion = 15542.696731 eV Total energy + Delta-G solvation = -2769.799188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.75788 -37.49688 -36.04093 -33.83024 -32.67101 -31.07639 -28.89879 -26.42454 -25.25453 -25.09886 -22.74611 -20.38998 -20.00719 -19.19861 -17.87340 -16.77700 -16.14174 -15.52751 -15.31941 -14.87781 -14.73941 -14.47220 -14.01486 -13.25586 -13.00501 -12.72945 -12.30088 -12.06968 -11.85788 -11.70983 -11.46029 -11.24982 -11.19980 -11.04223 -10.90498 -10.77512 -10.52296 -10.41651 -9.55382 -9.38411 -9.26841 -9.13964 -8.86974 -8.58728 -7.82755 -6.19451 -4.24829 2.27636 2.41074 3.22515 3.22756 3.30548 3.33428 3.62861 4.32460 4.76680 4.90296 5.02819 5.11921 5.19069 5.25088 5.37132 5.41802 5.65338 5.79074 5.88461 5.97813 6.01227 6.10212 6.11443 6.20626 6.27969 6.33851 6.40146 6.58289 6.63407 6.66759 6.75668 6.80474 6.83510 6.89536 7.54396 7.78321 8.15977 8.54538 8.78365 8.80433 9.42143 10.90238 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.031913 B = 0.005112 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.167051 B = 5476.224221 C = 5599.833887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.088 4.088 4 C -0.093 4.093 5 C -0.075 4.075 6 C -0.144 4.144 7 C -0.200 4.200 8 C 0.531 3.469 9 O -0.568 6.568 10 N -0.639 5.639 11 C 0.102 3.898 12 C 0.033 3.967 13 C -0.519 4.519 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.887 5.887 17 Si 0.894 3.106 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.106 3.894 22 H 0.093 0.907 23 H 0.095 0.905 24 H 0.105 0.895 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.264 0.736 37 H 0.063 0.937 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.286 2.480 5.263 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.156 4.156 3 C -0.125 4.125 4 C -0.114 4.114 5 C -0.113 4.113 6 C -0.162 4.162 7 C -0.236 4.236 8 C 0.320 3.680 9 O -0.449 6.449 10 N -0.372 5.372 11 C -0.020 4.020 12 C 0.014 3.986 13 C -0.557 4.557 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.524 5.524 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.016 4.016 22 H 0.111 0.889 23 H 0.113 0.887 24 H 0.123 0.877 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.343 2.285 5.832 12.957 hybrid contribution 0.260 -0.162 -1.027 1.072 sum -11.083 2.123 4.805 12.264 Atomic orbital electron populations 1.23730 0.95739 1.01397 1.02953 1.22940 0.96066 0.98495 0.98093 1.20804 0.98032 0.95943 0.97705 1.21163 0.96082 0.97853 0.96335 1.20581 0.98404 0.95607 0.96662 1.22990 0.95967 0.98564 0.98686 1.23799 0.95954 1.01556 1.02339 1.20153 0.79118 0.86887 0.81832 1.90622 1.68909 1.48738 1.36607 1.50534 1.38836 1.28630 1.19209 1.23458 0.87952 0.93347 0.97211 1.20500 0.91836 0.91464 0.94828 1.20979 1.40335 0.95568 0.98864 0.91921 1.25005 0.94951 0.94849 0.98690 1.69943 1.43347 1.03351 1.35755 0.86556 0.78404 0.79074 0.83798 1.20529 1.21140 1.19719 1.23740 0.98712 0.96981 0.82121 0.88890 0.88699 0.87659 0.90546 0.89849 0.88674 0.90711 0.90322 0.87489 0.88645 0.88823 0.90963 0.92195 0.91907 0.92660 0.91809 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.44 14.32 29.01 0.42 -2.02 16 2 C -0.14 -1.96 7.79 -36.03 -0.28 -2.24 16 3 C -0.09 -1.21 5.17 -27.88 -0.14 -1.35 16 4 C -0.09 -1.41 2.32 -91.77 -0.21 -1.62 16 5 C -0.08 -1.04 4.39 -27.88 -0.12 -1.16 16 6 C -0.14 -1.63 8.46 -36.02 -0.30 -1.93 16 7 C -0.20 -2.04 14.32 29.02 0.42 -1.62 16 8 C 0.53 10.20 6.15 -10.99 -0.07 10.14 16 9 O -0.57 -12.57 16.63 5.55 0.09 -12.47 16 10 N -0.64 -12.76 3.57 -178.12 -0.64 -13.40 16 11 C 0.10 2.12 8.39 -2.97 -0.02 2.10 16 12 C 0.03 0.76 3.60 -90.85 -0.33 0.43 16 13 C -0.52 -13.07 8.77 -34.44 -0.30 -13.37 16 14 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 15 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -23.75 13.29 55.43 0.74 -23.02 16 17 Si 0.89 19.90 29.54 -169.99 -5.02 14.88 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C 0.11 2.18 6.49 -2.77 -0.02 2.16 16 22 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 23 H 0.09 1.03 7.84 -52.48 -0.41 0.61 16 24 H 0.11 1.71 7.52 -52.48 -0.39 1.32 16 25 H 0.08 0.92 6.91 -51.93 -0.36 0.57 16 26 H 0.08 1.22 6.33 -51.93 -0.33 0.89 16 27 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.07 1.10 6.85 -51.93 -0.36 0.74 16 29 H 0.08 1.17 7.93 -51.93 -0.41 0.75 16 30 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.10 0.98 7.84 -52.49 -0.41 0.57 16 32 H 0.09 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.52 7.99 -51.93 -0.41 1.11 16 LS Contribution 320.14 15.07 4.82 4.82 Total: -1.00 -27.70 320.14 -7.09 -34.78 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.01 Total: 3.23 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -1.07 Total: -8.83 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.10 Total: -36.41 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.70 -7.09 -34.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.787 kcal (2) G-P(sol) polarization free energy of solvation -27.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds