Wall clock time and date at job start Mon Mar 30 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99944 * 2 1 4 4 C 1.53002 * 109.47071 * 123.14060 * 3 2 1 5 5 C 1.53000 * 109.46911 * 295.18115 * 4 3 2 6 6 C 1.50701 * 109.47213 * 294.28679 * 5 4 3 7 7 C 1.30995 * 119.99745 * 125.00030 * 6 5 4 8 8 C 1.50698 * 109.47152 * 55.18207 * 4 3 2 9 9 O 1.21287 * 119.99965 * 239.99861 * 8 4 3 10 10 N 1.34773 * 120.00318 * 60.00221 * 8 4 3 11 11 C 1.47579 * 134.49530 * 179.97438 * 10 8 4 12 12 C 1.53946 * 86.11782 * 204.63591 * 11 10 8 13 13 C 1.50696 * 113.74477 * 221.93894 * 12 11 10 14 14 H 1.08006 * 119.99729 * 358.08049 * 13 12 11 15 15 C 1.37875 * 120.00417 * 178.07426 * 13 12 11 16 16 N 1.31509 * 119.99892 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00281 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47311 * 89.99967 * 17 15 13 19 19 H 1.48497 * 109.47098 * 210.00331 * 17 15 13 20 20 H 1.48497 * 109.47003 * 329.99817 * 17 15 13 21 21 C 1.47937 * 134.49803 * 359.97438 * 10 8 4 22 22 H 1.07997 * 119.99962 * 179.97438 * 1 2 3 23 23 H 1.08005 * 119.99926 * 0.02562 * 1 2 3 24 24 H 1.08005 * 119.99926 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.47336 * 3.13598 * 3 2 1 26 26 H 1.09004 * 109.46940 * 243.13355 * 3 2 1 27 27 H 1.09003 * 109.47128 * 175.18361 * 4 3 2 28 28 H 1.09000 * 109.47255 * 54.28901 * 5 4 3 29 29 H 1.09001 * 109.47162 * 174.28985 * 5 4 3 30 30 H 1.07994 * 119.99964 * 304.99961 * 6 5 4 31 31 H 1.07996 * 120.00615 * 0.02562 * 7 6 5 32 32 H 1.08004 * 119.99791 * 180.02562 * 7 6 5 33 33 H 1.08999 * 113.76879 * 90.33867 * 11 10 8 34 34 H 1.08995 * 113.77041 * 318.93797 * 11 10 8 35 35 H 1.09003 * 113.74307 * 90.74049 * 12 11 10 36 36 H 0.97003 * 120.00181 * 179.97438 * 16 15 13 37 37 H 1.08995 * 113.86678 * 41.10274 * 21 10 8 38 38 H 1.08998 * 113.76516 * 269.60497 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0014 1.3525 1.2079 5 6 2.1750 1.3577 2.4954 6 6 1.3799 2.6354 2.5768 7 6 0.0799 2.5891 2.7310 8 6 3.9008 0.1434 1.1932 9 8 3.8826 -0.6373 2.1212 10 7 4.7255 -0.0705 0.1489 11 6 5.7123 -1.1132 -0.1932 12 6 6.3814 -0.0432 -1.0749 13 6 6.8402 -0.5604 -2.4139 14 1 6.7139 -1.6040 -2.6618 15 6 7.4213 0.2986 -3.3225 16 7 7.5755 1.5692 -3.0205 17 14 7.9894 -0.3425 -4.9825 18 1 6.8794 -0.2310 -5.9625 19 1 9.1474 0.4594 -5.4528 20 1 8.3933 -1.7655 -4.8518 21 6 5.0052 0.6457 -1.1150 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9354 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3566 2.1328 0.0562 26 1 2.6473 1.3875 -0.9168 27 1 3.6079 2.2570 1.1617 28 1 1.4948 0.5060 2.4941 29 1 2.8414 1.2891 3.3552 30 1 1.8820 3.5890 2.5081 31 1 -0.4222 1.6355 2.8001 32 1 -0.4899 3.5048 2.7889 33 1 5.2930 -1.9470 -0.7563 34 1 6.3241 -1.4327 0.6503 35 1 7.1469 0.5356 -0.5579 36 1 7.9846 2.1734 -3.6596 37 1 5.0529 1.7292 -1.0067 38 1 4.3787 0.3273 -1.9482 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598032978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:20 Heat of formation + Delta-G solvation = 6.744939 kcal Electronic energy + Delta-G solvation = -18313.114257 eV Core-core repulsion = 15542.696731 eV Total energy + Delta-G solvation = -2770.417527 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30440 -39.04307 -37.38505 -34.82347 -34.56733 -32.25935 -30.53826 -27.55633 -27.02440 -26.76694 -24.08290 -21.82299 -21.18170 -20.32344 -19.41290 -18.63753 -17.67526 -16.83343 -16.79845 -16.40168 -15.98397 -15.79731 -15.48367 -14.41597 -14.36564 -14.15593 -13.98343 -13.35108 -13.32920 -13.20072 -12.93176 -12.78696 -12.63608 -12.49702 -12.32929 -12.23185 -11.85558 -11.63355 -11.32133 -11.13200 -10.65722 -10.45375 -10.27631 -10.10483 -9.51331 -8.15539 -6.26357 1.37868 1.43325 1.47164 1.49838 1.58615 1.69014 2.07043 2.46988 3.15738 3.45487 3.79818 4.02251 4.03587 4.21283 4.30366 4.33443 4.41714 4.45736 4.55857 4.58508 4.66381 4.79199 4.83927 4.88947 4.93161 5.01653 5.05592 5.10646 5.13111 5.27121 5.60842 5.73253 5.79079 5.82548 5.85635 5.96346 6.23758 6.80754 6.93495 7.21137 7.43624 8.94186 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.031913 B = 0.005112 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.167051 B = 5476.224221 C = 5599.833887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.167 4.167 3 C -0.078 4.078 4 C -0.088 4.088 5 C -0.067 4.067 6 C -0.157 4.157 7 C -0.184 4.184 8 C 0.527 3.473 9 O -0.600 6.600 10 N -0.640 5.640 11 C 0.106 3.894 12 C 0.022 3.978 13 C -0.531 4.531 14 H 0.063 0.937 15 C 0.024 3.976 16 N -0.916 5.916 17 Si 0.955 3.045 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.269 1.269 21 C 0.126 3.874 22 H 0.102 0.898 23 H 0.116 0.884 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.035 0.965 36 H 0.265 0.735 37 H 0.067 0.933 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.151 3.268 4.749 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.185 4.185 3 C -0.116 4.116 4 C -0.109 4.109 5 C -0.105 4.105 6 C -0.175 4.175 7 C -0.220 4.220 8 C 0.319 3.681 9 O -0.483 6.483 10 N -0.373 5.373 11 C -0.017 4.017 12 C 0.002 3.998 13 C -0.570 4.570 14 H 0.081 0.919 15 C -0.176 4.176 16 N -0.555 5.555 17 Si 0.781 3.219 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.194 1.194 21 C 0.004 3.996 22 H 0.120 0.880 23 H 0.134 0.866 24 H 0.094 0.906 25 H 0.119 0.881 26 H 0.091 0.909 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.139 0.861 31 H 0.112 0.888 32 H 0.134 0.866 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.217 3.068 5.320 14.574 hybrid contribution 0.786 -0.459 -0.796 1.209 sum -12.431 2.610 4.524 13.484 Atomic orbital electron populations 1.23954 0.94903 1.02853 0.99494 1.22793 0.96865 0.97504 1.01337 1.20748 0.97937 0.96647 0.96222 1.21225 0.95866 0.95737 0.98060 1.20467 0.97944 0.96902 0.95146 1.22884 0.96240 0.97629 1.00772 1.23992 0.95539 1.02533 0.99939 1.20945 0.78807 0.87711 0.80655 1.90597 1.69840 1.50246 1.37584 1.50519 1.39079 1.28235 1.19432 1.23344 0.88165 0.93295 0.96866 1.20421 0.92437 0.92527 0.94370 1.21256 1.40365 0.95661 0.99679 0.91908 1.25691 0.95106 0.94995 1.01816 1.70039 1.44237 1.04324 1.36858 0.85600 0.77915 0.78458 0.79959 1.19858 1.21202 1.19378 1.23445 0.96881 0.96878 0.82390 0.87968 0.86573 0.90571 0.88052 0.90949 0.87674 0.91838 0.92042 0.86132 0.88761 0.86607 0.90246 0.92284 0.94674 0.92625 0.91488 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.79 14.32 67.78 0.97 -2.82 16 2 C -0.17 -4.55 7.79 25.65 0.20 -4.35 16 3 C -0.08 -2.04 5.17 29.85 0.15 -1.88 16 4 C -0.09 -2.59 2.32 -11.54 -0.03 -2.62 16 5 C -0.07 -1.79 4.39 29.85 0.13 -1.66 16 6 C -0.16 -3.16 8.46 25.65 0.22 -2.94 16 7 C -0.18 -3.12 14.32 67.79 0.97 -2.14 16 8 C 0.53 20.48 6.15 87.66 0.54 21.02 16 9 O -0.60 -27.07 16.63 -3.05 -0.05 -27.12 16 10 N -0.64 -25.87 3.57 -835.83 -2.99 -28.86 16 11 C 0.11 4.47 8.39 86.49 0.73 5.20 16 12 C 0.02 1.02 3.60 -10.88 -0.04 0.98 16 13 C -0.53 -26.92 8.77 25.60 0.22 -26.70 16 14 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 15 C 0.02 1.24 5.46 84.66 0.46 1.71 16 16 N -0.92 -49.35 13.29 21.45 0.28 -49.06 16 17 Si 0.95 40.57 29.54 68.60 2.03 42.60 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 21 C 0.13 5.20 6.49 86.42 0.56 5.76 16 22 H 0.10 2.01 8.06 -2.91 -0.02 1.99 16 23 H 0.12 2.04 7.84 -2.91 -0.02 2.01 16 24 H 0.08 2.52 7.52 -2.91 -0.02 2.50 16 25 H 0.10 2.13 6.91 -2.39 -0.02 2.12 16 26 H 0.07 2.03 6.33 -2.38 -0.02 2.02 16 27 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.06 1.82 6.85 -2.39 -0.02 1.81 16 29 H 0.06 1.83 7.93 -2.39 -0.02 1.81 16 30 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.09 1.63 7.84 -2.91 -0.02 1.61 16 32 H 0.12 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.08 3.23 8.09 -2.39 -0.02 3.21 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 37 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.08 3.16 7.99 -2.39 -0.02 3.14 16 Total: -1.00 -59.23 320.14 5.37 -53.86 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 1.01 Total: 19.05 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 5.09 Total: -10.45 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -2.70 Total: -77.92 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.05 Total: -27.12 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -59.23 5.37 -53.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.607 kcal (2) G-P(sol) polarization free energy of solvation -59.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds