Wall clock time and date at job start Mon Mar 30 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47635 * 2 1 4 4 H 1.08995 * 109.47139 * 305.00262 * 3 2 1 5 5 O 1.42903 * 109.46911 * 65.00004 * 3 2 1 6 6 C 1.35677 * 117.00253 * 260.47758 * 5 3 2 7 7 C 1.39312 * 119.81309 * 6.21404 * 6 5 3 8 8 C 1.36435 * 120.18537 * 180.02562 * 7 6 5 9 9 C 1.40839 * 119.80678 * 359.97438 * 8 7 6 10 10 C 1.41213 * 120.17793 * 179.97438 * 9 8 7 11 11 H 1.08010 * 120.00077 * 335.22229 * 10 9 8 12 12 C 1.39888 * 120.00261 * 155.22505 * 10 9 8 13 13 N 1.30873 * 119.99796 * 343.97483 * 12 10 9 14 14 Si 1.86803 * 120.00118 * 163.97392 * 12 10 9 15 15 H 1.48501 * 109.47103 * 59.99970 * 14 12 10 16 16 H 1.48494 * 109.47224 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47133 * 300.00181 * 14 12 10 18 18 C 1.40830 * 119.64375 * 0.25308 * 9 8 7 19 19 C 1.36438 * 119.81033 * 359.46215 * 18 9 8 20 20 C 1.53002 * 109.47213 * 184.99755 * 3 2 1 21 21 H 1.08998 * 109.46885 * 65.00455 * 20 3 2 22 22 C 1.53000 * 109.46873 * 185.00273 * 20 3 2 23 23 N 1.46893 * 109.47281 * 305.00158 * 20 3 2 24 24 H 1.09006 * 109.46756 * 59.99707 * 1 2 3 25 25 H 1.09000 * 109.47576 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46951 * 300.00070 * 1 2 3 27 27 H 1.09003 * 109.46951 * 239.99930 * 2 1 3 28 28 H 1.08998 * 109.46702 * 120.00638 * 2 1 3 29 29 H 1.07998 * 119.91101 * 359.97438 * 7 6 5 30 30 H 1.07994 * 120.09847 * 179.97438 * 8 7 6 31 31 H 0.97008 * 120.00197 * 180.02562 * 13 12 10 32 32 H 1.08006 * 120.09589 * 179.72987 * 18 9 8 33 33 H 1.07997 * 119.90718 * 180.26893 * 19 18 9 34 34 H 1.09002 * 109.46991 * 180.02562 * 22 20 3 35 35 H 1.09001 * 109.47164 * 299.99454 * 22 20 3 36 36 H 1.08995 * 109.47708 * 60.00498 * 22 20 3 37 37 H 1.00904 * 110.99835 * 56.04846 * 23 20 3 38 38 H 1.00900 * 111.00046 * 179.97438 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8417 5 8 1.6621 2.0813 1.2211 6 6 0.5699 2.8853 1.1832 7 6 -0.2001 2.9536 0.0242 8 6 -1.2996 3.7600 -0.0224 9 6 -1.6556 4.5242 1.1057 10 6 -2.7918 5.3619 1.0659 11 1 -3.1529 5.7376 0.1198 12 6 -3.4497 5.7052 2.2518 13 7 -3.2253 5.0227 3.3457 14 14 -4.6484 7.1377 2.2739 15 1 -5.7513 6.8750 1.3149 16 1 -5.2080 7.2937 3.6405 17 1 -3.9391 8.3827 1.8837 18 6 -0.8691 4.4530 2.2718 19 6 0.2240 3.6372 2.3038 20 6 3.5649 1.4441 -0.1257 21 1 3.8500 1.0375 -1.0960 22 6 4.0853 2.8774 -0.0005 23 7 4.1451 0.6177 0.9412 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 0.0746 2.3672 -0.8401 30 1 -1.8952 3.8122 -0.9218 31 1 -3.6817 5.2605 4.1680 32 1 -1.1330 5.0392 3.1396 33 1 0.8258 3.5780 3.1986 34 1 5.1716 2.8787 -0.0905 35 1 3.6549 3.4907 -0.7922 36 1 3.8004 3.2841 0.9698 37 1 3.7677 -0.3179 0.9196 38 1 5.1521 0.6024 0.8796 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720105944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:53 Heat of formation + Delta-G solvation = -27.041126 kcal Electronic energy + Delta-G solvation = -18461.538002 eV Core-core repulsion = 15689.655401 eV Total energy + Delta-G solvation = -2771.882600 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.38219 -37.01699 -35.10532 -33.16963 -32.57556 -29.63347 -29.08116 -28.85740 -26.32077 -24.59403 -22.09068 -21.32720 -20.63544 -19.23417 -17.47662 -17.00494 -15.89466 -15.19896 -15.03040 -14.82068 -14.39024 -13.87410 -13.68145 -12.86172 -12.71837 -12.47509 -12.17859 -12.06742 -11.90306 -11.79294 -11.48414 -11.44932 -11.11381 -11.02547 -10.84870 -10.66596 -10.46852 -10.27086 -9.72974 -9.69714 -9.18119 -8.92451 -8.55521 -7.55344 -6.89697 -6.64205 -4.18833 2.85353 3.02606 3.11120 3.13776 3.27539 3.99688 4.18996 4.63296 4.69265 4.87856 5.05427 5.33752 5.38185 5.57353 5.64321 5.74563 5.82119 5.98120 6.05217 6.10973 6.14565 6.18668 6.30696 6.44903 6.54029 6.70686 6.84152 7.05272 7.18232 7.23892 7.28594 7.50681 7.57571 7.64434 7.88274 8.07641 8.28771 8.57257 8.75977 8.97075 9.07776 10.29625 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.040259 B = 0.005141 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.328016 B = 5445.089327 C = 5639.432662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C 0.091 3.909 4 H 0.074 0.926 5 O -0.299 6.299 6 C 0.000 4.000 7 C -0.173 4.173 8 C -0.197 4.197 9 C 0.085 3.915 10 C -0.465 4.465 11 H 0.074 0.926 12 C 0.075 3.925 13 N -0.803 5.803 14 Si 0.907 3.093 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.265 1.265 18 C -0.132 4.132 19 C -0.123 4.123 20 C 0.090 3.910 21 H 0.038 0.962 22 C -0.143 4.143 23 N -0.836 5.836 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.279 0.721 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.339 0.661 38 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.996 -6.163 -5.250 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.033 3.967 4 H 0.092 0.908 5 O -0.214 6.214 6 C -0.044 4.044 7 C -0.191 4.191 8 C -0.216 4.216 9 C 0.083 3.917 10 C -0.496 4.496 11 H 0.092 0.908 12 C -0.141 4.141 13 N -0.430 5.430 14 Si 0.732 3.268 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.190 1.190 18 C -0.152 4.152 19 C -0.142 4.142 20 C -0.021 4.021 21 H 0.056 0.944 22 C -0.201 4.201 23 N -0.367 5.367 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.143 0.857 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.153 0.847 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.683 -5.687 -4.342 11.251 hybrid contribution -0.393 -0.089 -0.974 1.054 sum 8.290 -5.776 -5.317 11.417 Atomic orbital electron populations 1.21882 0.94880 1.00972 1.03318 1.21979 0.97357 0.97000 1.01533 1.22277 0.92686 0.92849 0.88880 0.90811 1.86022 1.43998 1.59819 1.31544 1.18661 0.90815 0.99062 0.95819 1.20494 0.98558 1.03544 0.96519 1.20557 0.99616 1.01817 0.99658 1.17571 0.92195 0.90880 0.91041 1.19411 1.10084 1.26449 0.93607 0.90804 1.25843 0.97014 0.96180 0.95100 1.69816 1.37284 1.34563 1.01296 0.86400 0.80412 0.82037 0.77998 1.19194 1.20438 1.18972 1.21005 0.93605 1.00458 1.00091 1.19844 0.99301 0.99324 0.95759 1.21504 0.93824 0.94938 0.91838 0.94399 1.21727 0.99521 0.95089 1.03723 1.58657 1.09973 1.17221 1.50882 0.92721 0.93489 0.91026 0.92238 0.90977 0.88425 0.89040 0.91002 0.85701 0.88638 0.93416 0.92502 0.90524 0.84709 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.47 37.16 0.31 -2.08 16 2 C -0.14 -1.96 5.02 -26.73 -0.13 -2.10 16 3 C 0.09 1.44 2.01 -26.73 -0.05 1.39 16 4 H 0.07 1.21 5.42 -51.93 -0.28 0.93 16 5 O -0.30 -6.00 8.63 -18.73 -0.16 -6.16 16 6 C 0.00 0.00 5.70 -38.79 -0.22 -0.22 16 7 C -0.17 -3.83 7.27 -39.83 -0.29 -4.12 16 8 C -0.20 -4.83 9.74 -39.25 -0.38 -5.21 16 9 C 0.09 2.29 5.58 -106.80 -0.60 1.70 16 10 C -0.47 -12.50 9.05 -37.84 -0.34 -12.84 16 11 H 0.07 1.91 7.90 -52.48 -0.41 1.49 16 12 C 0.07 1.91 5.17 -17.34 -0.09 1.82 16 13 N -0.80 -21.14 10.88 55.54 0.60 -20.53 16 14 Si 0.91 19.00 29.59 -169.99 -5.03 13.97 16 15 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16 19 C -0.12 -3.02 9.92 -39.83 -0.40 -3.41 16 20 C 0.09 1.19 3.35 -67.72 -0.23 0.96 16 21 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 22 C -0.14 -1.96 9.29 37.16 0.35 -1.61 16 23 N -0.84 -10.20 9.12 -4.67 -0.04 -10.24 16 24 H 0.05 0.85 6.69 -51.93 -0.35 0.50 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.36 6.53 -51.93 -0.34 1.02 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.00 6.80 -51.93 -0.35 0.65 16 29 H 0.10 1.91 4.21 -52.49 -0.22 1.68 16 30 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 32 H 0.13 3.40 6.12 -52.48 -0.32 3.07 16 33 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.26 7.56 -51.93 -0.39 0.87 16 37 H 0.34 3.73 6.99 -39.29 -0.27 3.45 16 38 H 0.33 3.30 9.04 -39.29 -0.36 2.94 16 LS Contribution 301.11 15.07 4.54 4.54 Total: -1.00 -28.21 301.11 -7.89 -36.10 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.39 Total: 11.88 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -2.41 Total: -29.55 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.56 Total: -30.78 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.16 Total: -6.16 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.21 -7.89 -36.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720105944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.060 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds