Wall clock time and date at job start Mon Mar 30 2020 06:59:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52993 * 109.47635 * 2 1
4 4 H 1.08995 * 109.47139 * 305.00262 * 3 2 1
5 5 O 1.42903 * 109.46911 * 65.00004 * 3 2 1
6 6 C 1.35677 * 117.00253 * 260.47758 * 5 3 2
7 7 C 1.39312 * 119.81309 * 6.21404 * 6 5 3
8 8 C 1.36435 * 120.18537 * 180.02562 * 7 6 5
9 9 C 1.40839 * 119.80678 * 359.97438 * 8 7 6
10 10 C 1.41213 * 120.17793 * 179.97438 * 9 8 7
11 11 H 1.08010 * 120.00077 * 335.22229 * 10 9 8
12 12 C 1.39888 * 120.00261 * 155.22505 * 10 9 8
13 13 N 1.30873 * 119.99796 * 343.97483 * 12 10 9
14 14 Si 1.86803 * 120.00118 * 163.97392 * 12 10 9
15 15 H 1.48501 * 109.47103 * 59.99970 * 14 12 10
16 16 H 1.48494 * 109.47224 * 179.97438 * 14 12 10
17 17 H 1.48503 * 109.47133 * 300.00181 * 14 12 10
18 18 C 1.40830 * 119.64375 * 0.25308 * 9 8 7
19 19 C 1.36438 * 119.81033 * 359.46215 * 18 9 8
20 20 C 1.53002 * 109.47213 * 184.99755 * 3 2 1
21 21 H 1.08998 * 109.46885 * 65.00455 * 20 3 2
22 22 C 1.53000 * 109.46873 * 185.00273 * 20 3 2
23 23 N 1.46893 * 109.47281 * 305.00158 * 20 3 2
24 24 H 1.09006 * 109.46756 * 59.99707 * 1 2 3
25 25 H 1.09000 * 109.47576 * 179.97438 * 1 2 3
26 26 H 1.09003 * 109.46951 * 300.00070 * 1 2 3
27 27 H 1.09003 * 109.46951 * 239.99930 * 2 1 3
28 28 H 1.08998 * 109.46702 * 120.00638 * 2 1 3
29 29 H 1.07998 * 119.91101 * 359.97438 * 7 6 5
30 30 H 1.07994 * 120.09847 * 179.97438 * 8 7 6
31 31 H 0.97008 * 120.00197 * 180.02562 * 13 12 10
32 32 H 1.08006 * 120.09589 * 179.72987 * 18 9 8
33 33 H 1.07997 * 119.90718 * 180.26893 * 19 18 9
34 34 H 1.09002 * 109.46991 * 180.02562 * 22 20 3
35 35 H 1.09001 * 109.47164 * 299.99454 * 22 20 3
36 36 H 1.08995 * 109.47708 * 60.00498 * 22 20 3
37 37 H 1.00904 * 110.99835 * 56.04846 * 23 20 3
38 38 H 1.00900 * 111.00046 * 179.97438 * 23 20 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6055 1.9814 -0.8417
5 8 1.6621 2.0813 1.2211
6 6 0.5699 2.8853 1.1832
7 6 -0.2001 2.9536 0.0242
8 6 -1.2996 3.7600 -0.0224
9 6 -1.6556 4.5242 1.1057
10 6 -2.7918 5.3619 1.0659
11 1 -3.1529 5.7376 0.1198
12 6 -3.4497 5.7052 2.2518
13 7 -3.2253 5.0227 3.3457
14 14 -4.6484 7.1377 2.2739
15 1 -5.7513 6.8750 1.3149
16 1 -5.2080 7.2937 3.6405
17 1 -3.9391 8.3827 1.8837
18 6 -0.8691 4.4530 2.2718
19 6 0.2240 3.6372 2.3038
20 6 3.5649 1.4441 -0.1257
21 1 3.8500 1.0375 -1.0960
22 6 4.0853 2.8774 -0.0005
23 7 4.1451 0.6177 0.9412
24 1 -0.3633 0.5139 -0.8900
25 1 -0.3634 -1.0276 -0.0005
26 1 -0.3633 0.5139 0.8900
27 1 1.8933 -0.5139 -0.8900
28 1 1.8932 -0.5139 0.8899
29 1 0.0746 2.3672 -0.8401
30 1 -1.8952 3.8122 -0.9218
31 1 -3.6817 5.2605 4.1680
32 1 -1.1330 5.0392 3.1396
33 1 0.8258 3.5780 3.1986
34 1 5.1716 2.8787 -0.0905
35 1 3.6549 3.4907 -0.7922
36 1 3.8004 3.2841 0.9698
37 1 3.7677 -0.3179 0.9196
38 1 5.1521 0.6024 0.8796
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000720105944.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:59:52
Heat of formation + Delta-G solvation = -44.218944 kcal
Electronic energy + Delta-G solvation = -18462.282888 eV
Core-core repulsion = 15689.655401 eV
Total energy + Delta-G solvation = -2772.627486 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 249.147 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.94147 -38.68870 -36.51762 -35.01719 -33.79711 -31.49402 -30.89047 -30.01732
-27.67927 -26.40935 -23.64862 -22.62286 -22.49008 -20.68180 -19.25627 -18.68939
-17.11278 -16.90302 -16.34323 -16.12646 -15.87691 -15.62382 -15.07382 -14.53343
-14.18615 -14.00252 -13.77248 -13.63619 -13.51702 -13.02542 -12.87583 -12.78537
-12.71652 -12.51788 -12.43396 -12.21007 -11.98944 -11.77517 -11.53540 -11.20489
-10.93468 -10.73762 -9.49624 -9.47361 -8.78973 -8.53670 -6.18356 1.01325
1.08572 1.39772 1.51036 1.56015 2.24378 2.74691 2.77910 3.66292
3.73722 3.75282 3.93712 4.09419 4.35133 4.37178 4.40658 4.43296
4.54930 4.67660 4.87101 4.93311 4.96831 5.00644 5.02686 5.11571
5.24914 5.28433 5.36300 5.41241 5.44548 5.66592 5.72267 5.96003
6.10470 6.31034 6.35369 6.63750 6.71857 6.91430 6.99709 7.21543
8.41638
Molecular weight = 249.15amu
Principal moments of inertia in cm(-1)
A = 0.040259 B = 0.005141 C = 0.004964
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 695.328016 B = 5445.089327 C = 5639.432662
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.134 4.134
3 C 0.078 3.922
4 H 0.070 0.930
5 O -0.308 6.308
6 C 0.018 3.982
7 C -0.165 4.165
8 C -0.205 4.205
9 C 0.051 3.949
10 C -0.502 4.502
11 H 0.074 0.926
12 C 0.032 3.968
13 N -0.837 5.837
14 Si 0.981 3.019
15 H -0.260 1.260
16 H -0.270 1.270
17 H -0.261 1.261
18 C -0.151 4.151
19 C -0.141 4.141
20 C 0.095 3.905
21 H 0.071 0.929
22 C -0.143 4.143
23 N -0.849 5.849
24 H 0.053 0.947
25 H 0.067 0.933
26 H 0.030 0.970
27 H 0.096 0.904
28 H 0.074 0.926
29 H 0.130 0.870
30 H 0.102 0.898
31 H 0.285 0.715
32 H 0.107 0.893
33 H 0.101 0.899
34 H 0.071 0.929
35 H 0.055 0.945
36 H 0.042 0.958
37 H 0.347 0.653
38 H 0.349 0.651
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.008 -7.249 -6.749 14.081
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.171 4.171
3 C 0.021 3.979
4 H 0.088 0.912
5 O -0.224 6.224
6 C -0.026 4.026
7 C -0.184 4.184
8 C -0.225 4.225
9 C 0.049 3.951
10 C -0.532 4.532
11 H 0.092 0.908
12 C -0.181 4.181
13 N -0.464 5.464
14 Si 0.802 3.198
15 H -0.184 1.184
16 H -0.194 1.194
17 H -0.186 1.186
18 C -0.170 4.170
19 C -0.160 4.160
20 C -0.016 4.016
21 H 0.089 0.911
22 C -0.201 4.201
23 N -0.384 5.384
24 H 0.072 0.928
25 H 0.086 0.914
26 H 0.049 0.951
27 H 0.115 0.885
28 H 0.092 0.908
29 H 0.147 0.853
30 H 0.120 0.880
31 H 0.096 0.904
32 H 0.125 0.875
33 H 0.119 0.881
34 H 0.090 0.910
35 H 0.074 0.926
36 H 0.061 0.939
37 H 0.162 0.838
38 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 9.724 -6.800 -5.852 13.231
hybrid contribution -0.540 0.087 -0.557 0.781
sum 9.185 -6.713 -6.409 13.058
Atomic orbital electron populations
1.21852 0.96314 1.01730 1.01149 1.21960 0.95911 0.95830 1.03442
1.22718 0.94902 0.93505 0.86763 0.91202 1.86020 1.42589 1.59342
1.34402 1.18663 0.91049 0.97852 0.95022 1.20728 0.97415 1.02815
0.97407 1.20794 1.00472 1.01799 0.99404 1.17908 0.92962 0.92186
0.92053 1.19670 1.11047 1.28081 0.94420 0.90803 1.26706 0.98654
0.98429 0.94261 1.69889 1.38536 1.36013 1.02001 0.85270 0.77938
0.78127 0.78436 1.18429 1.19404 1.18586 1.20899 0.94744 1.01580
0.99813 1.19980 0.99183 0.99861 0.96960 1.21458 0.91584 0.94883
0.93659 0.91132 1.21716 1.01208 0.95492 1.01656 1.58579 1.11244
1.17704 1.50824 0.92800 0.91417 0.95118 0.88519 0.90769 0.85292
0.88027 0.90423 0.87471 0.88071 0.91011 0.92641 0.93917 0.83787
0.83721
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.46 8.47 71.98 0.61 -3.85 16
2 C -0.13 -3.28 5.02 30.59 0.15 -3.13 16
3 C 0.08 2.27 2.01 30.59 0.06 2.34 16
4 H 0.07 2.10 5.42 -2.39 -0.01 2.08 16
5 O -0.31 -12.12 8.63 -89.95 -0.78 -12.89 16
6 C 0.02 0.84 5.70 22.79 0.13 0.97 16
7 C -0.17 -7.26 7.27 22.11 0.16 -7.10 16
8 C -0.21 -10.20 9.74 22.49 0.22 -9.98 16
9 C 0.05 2.84 5.58 -21.28 -0.12 2.72 16
10 C -0.50 -27.87 9.05 23.40 0.21 -27.66 16
11 H 0.07 3.93 7.90 -2.91 -0.02 3.90 16
12 C 0.03 1.69 5.17 85.24 0.44 2.13 16
13 N -0.84 -45.58 10.88 21.82 0.24 -45.34 16
14 Si 0.98 39.49 29.59 68.60 2.03 41.52 16
15 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16
16 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16
17 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16
18 C -0.15 -8.34 8.64 22.48 0.19 -8.14 16
19 C -0.14 -7.12 9.92 22.11 0.22 -6.90 16
20 C 0.10 2.20 3.35 44.92 0.15 2.35 16
21 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
22 C -0.14 -3.61 9.29 71.98 0.67 -2.95 16
23 N -0.85 -18.11 9.12 -168.69 -1.54 -19.65 16
24 H 0.05 1.54 6.69 -2.38 -0.02 1.53 16
25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16
26 H 0.03 1.13 6.53 -2.39 -0.02 1.11 16
27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
28 H 0.07 1.82 6.80 -2.39 -0.02 1.81 16
29 H 0.13 4.79 4.21 -2.91 -0.01 4.78 16
30 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16
31 H 0.29 14.14 8.30 -92.70 -0.77 13.37 16
32 H 0.11 6.19 6.12 -2.91 -0.02 6.17 16
33 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16
34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16
35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16
36 H 0.04 1.36 7.56 -2.39 -0.02 1.35 16
37 H 0.35 6.43 6.99 -89.69 -0.63 5.80 16
38 H 0.35 5.73 9.04 -89.69 -0.81 4.92 16
Total: -1.00 -63.10 301.11 2.69 -60.41
By element:
Atomic # 1 Polarization: 35.52 SS G_CDS: -0.36 Total: 35.16 kcal
Atomic # 6 Polarization: -62.30 SS G_CDS: 3.10 Total: -59.20 kcal
Atomic # 7 Polarization: -63.69 SS G_CDS: -1.30 Total: -64.99 kcal
Atomic # 8 Polarization: -12.12 SS G_CDS: -0.78 Total: -12.89 kcal
Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal
Total: -63.10 2.69 -60.41 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000720105944.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.188 kcal
(2) G-P(sol) polarization free energy of solvation -63.097 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.909 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.406 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.219 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds