Wall clock time and date at job start Mon Mar 30 2020 06:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47635 * 2 1 4 4 H 1.08995 * 109.47139 * 305.00262 * 3 2 1 5 5 O 1.42903 * 109.46911 * 65.00004 * 3 2 1 6 6 C 1.35677 * 117.00253 * 260.47758 * 5 3 2 7 7 C 1.39312 * 119.81309 * 6.21404 * 6 5 3 8 8 C 1.36435 * 120.18537 * 180.02562 * 7 6 5 9 9 C 1.40839 * 119.80678 * 359.97438 * 8 7 6 10 10 C 1.41213 * 120.17793 * 179.97438 * 9 8 7 11 11 H 1.08010 * 120.00077 * 335.22229 * 10 9 8 12 12 C 1.39888 * 120.00261 * 155.22505 * 10 9 8 13 13 N 1.30873 * 119.99796 * 343.97483 * 12 10 9 14 14 Si 1.86803 * 120.00118 * 163.97392 * 12 10 9 15 15 H 1.48501 * 109.47103 * 59.99970 * 14 12 10 16 16 H 1.48494 * 109.47224 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47133 * 300.00181 * 14 12 10 18 18 C 1.40830 * 119.64375 * 0.25308 * 9 8 7 19 19 C 1.36438 * 119.81033 * 359.46215 * 18 9 8 20 20 C 1.53002 * 109.47213 * 184.99755 * 3 2 1 21 21 H 1.08998 * 109.46885 * 65.00455 * 20 3 2 22 22 C 1.53000 * 109.46873 * 185.00273 * 20 3 2 23 23 N 1.46893 * 109.47281 * 305.00158 * 20 3 2 24 24 H 1.09006 * 109.46756 * 59.99707 * 1 2 3 25 25 H 1.09000 * 109.47576 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46951 * 300.00070 * 1 2 3 27 27 H 1.09003 * 109.46951 * 239.99930 * 2 1 3 28 28 H 1.08998 * 109.46702 * 120.00638 * 2 1 3 29 29 H 1.07998 * 119.91101 * 359.97438 * 7 6 5 30 30 H 1.07994 * 120.09847 * 179.97438 * 8 7 6 31 31 H 0.97008 * 120.00197 * 180.02562 * 13 12 10 32 32 H 1.08006 * 120.09589 * 179.72987 * 18 9 8 33 33 H 1.07997 * 119.90718 * 180.26893 * 19 18 9 34 34 H 1.09002 * 109.46991 * 180.02562 * 22 20 3 35 35 H 1.09001 * 109.47164 * 299.99454 * 22 20 3 36 36 H 1.08995 * 109.47708 * 60.00498 * 22 20 3 37 37 H 1.00904 * 110.99835 * 56.04846 * 23 20 3 38 38 H 1.00900 * 111.00046 * 179.97438 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8417 5 8 1.6621 2.0813 1.2211 6 6 0.5699 2.8853 1.1832 7 6 -0.2001 2.9536 0.0242 8 6 -1.2996 3.7600 -0.0224 9 6 -1.6556 4.5242 1.1057 10 6 -2.7918 5.3619 1.0659 11 1 -3.1529 5.7376 0.1198 12 6 -3.4497 5.7052 2.2518 13 7 -3.2253 5.0227 3.3457 14 14 -4.6484 7.1377 2.2739 15 1 -5.7513 6.8750 1.3149 16 1 -5.2080 7.2937 3.6405 17 1 -3.9391 8.3827 1.8837 18 6 -0.8691 4.4530 2.2718 19 6 0.2240 3.6372 2.3038 20 6 3.5649 1.4441 -0.1257 21 1 3.8500 1.0375 -1.0960 22 6 4.0853 2.8774 -0.0005 23 7 4.1451 0.6177 0.9412 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 0.0746 2.3672 -0.8401 30 1 -1.8952 3.8122 -0.9218 31 1 -3.6817 5.2605 4.1680 32 1 -1.1330 5.0392 3.1396 33 1 0.8258 3.5780 3.1986 34 1 5.1716 2.8787 -0.0905 35 1 3.6549 3.4907 -0.7922 36 1 3.8004 3.2841 0.9698 37 1 3.7677 -0.3179 0.9196 38 1 5.1521 0.6024 0.8796 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720105944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:52 Heat of formation + Delta-G solvation = -44.218944 kcal Electronic energy + Delta-G solvation = -18462.282888 eV Core-core repulsion = 15689.655401 eV Total energy + Delta-G solvation = -2772.627486 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94147 -38.68870 -36.51762 -35.01719 -33.79711 -31.49402 -30.89047 -30.01732 -27.67927 -26.40935 -23.64862 -22.62286 -22.49008 -20.68180 -19.25627 -18.68939 -17.11278 -16.90302 -16.34323 -16.12646 -15.87691 -15.62382 -15.07382 -14.53343 -14.18615 -14.00252 -13.77248 -13.63619 -13.51702 -13.02542 -12.87583 -12.78537 -12.71652 -12.51788 -12.43396 -12.21007 -11.98944 -11.77517 -11.53540 -11.20489 -10.93468 -10.73762 -9.49624 -9.47361 -8.78973 -8.53670 -6.18356 1.01325 1.08572 1.39772 1.51036 1.56015 2.24378 2.74691 2.77910 3.66292 3.73722 3.75282 3.93712 4.09419 4.35133 4.37178 4.40658 4.43296 4.54930 4.67660 4.87101 4.93311 4.96831 5.00644 5.02686 5.11571 5.24914 5.28433 5.36300 5.41241 5.44548 5.66592 5.72267 5.96003 6.10470 6.31034 6.35369 6.63750 6.71857 6.91430 6.99709 7.21543 8.41638 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.040259 B = 0.005141 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.328016 B = 5445.089327 C = 5639.432662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.134 4.134 3 C 0.078 3.922 4 H 0.070 0.930 5 O -0.308 6.308 6 C 0.018 3.982 7 C -0.165 4.165 8 C -0.205 4.205 9 C 0.051 3.949 10 C -0.502 4.502 11 H 0.074 0.926 12 C 0.032 3.968 13 N -0.837 5.837 14 Si 0.981 3.019 15 H -0.260 1.260 16 H -0.270 1.270 17 H -0.261 1.261 18 C -0.151 4.151 19 C -0.141 4.141 20 C 0.095 3.905 21 H 0.071 0.929 22 C -0.143 4.143 23 N -0.849 5.849 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.030 0.970 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.102 0.898 31 H 0.285 0.715 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.347 0.653 38 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.008 -7.249 -6.749 14.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.171 4.171 3 C 0.021 3.979 4 H 0.088 0.912 5 O -0.224 6.224 6 C -0.026 4.026 7 C -0.184 4.184 8 C -0.225 4.225 9 C 0.049 3.951 10 C -0.532 4.532 11 H 0.092 0.908 12 C -0.181 4.181 13 N -0.464 5.464 14 Si 0.802 3.198 15 H -0.184 1.184 16 H -0.194 1.194 17 H -0.186 1.186 18 C -0.170 4.170 19 C -0.160 4.160 20 C -0.016 4.016 21 H 0.089 0.911 22 C -0.201 4.201 23 N -0.384 5.384 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.147 0.853 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.162 0.838 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.724 -6.800 -5.852 13.231 hybrid contribution -0.540 0.087 -0.557 0.781 sum 9.185 -6.713 -6.409 13.058 Atomic orbital electron populations 1.21852 0.96314 1.01730 1.01149 1.21960 0.95911 0.95830 1.03442 1.22718 0.94902 0.93505 0.86763 0.91202 1.86020 1.42589 1.59342 1.34402 1.18663 0.91049 0.97852 0.95022 1.20728 0.97415 1.02815 0.97407 1.20794 1.00472 1.01799 0.99404 1.17908 0.92962 0.92186 0.92053 1.19670 1.11047 1.28081 0.94420 0.90803 1.26706 0.98654 0.98429 0.94261 1.69889 1.38536 1.36013 1.02001 0.85270 0.77938 0.78127 0.78436 1.18429 1.19404 1.18586 1.20899 0.94744 1.01580 0.99813 1.19980 0.99183 0.99861 0.96960 1.21458 0.91584 0.94883 0.93659 0.91132 1.21716 1.01208 0.95492 1.01656 1.58579 1.11244 1.17704 1.50824 0.92800 0.91417 0.95118 0.88519 0.90769 0.85292 0.88027 0.90423 0.87471 0.88071 0.91011 0.92641 0.93917 0.83787 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 8.47 71.98 0.61 -3.85 16 2 C -0.13 -3.28 5.02 30.59 0.15 -3.13 16 3 C 0.08 2.27 2.01 30.59 0.06 2.34 16 4 H 0.07 2.10 5.42 -2.39 -0.01 2.08 16 5 O -0.31 -12.12 8.63 -89.95 -0.78 -12.89 16 6 C 0.02 0.84 5.70 22.79 0.13 0.97 16 7 C -0.17 -7.26 7.27 22.11 0.16 -7.10 16 8 C -0.21 -10.20 9.74 22.49 0.22 -9.98 16 9 C 0.05 2.84 5.58 -21.28 -0.12 2.72 16 10 C -0.50 -27.87 9.05 23.40 0.21 -27.66 16 11 H 0.07 3.93 7.90 -2.91 -0.02 3.90 16 12 C 0.03 1.69 5.17 85.24 0.44 2.13 16 13 N -0.84 -45.58 10.88 21.82 0.24 -45.34 16 14 Si 0.98 39.49 29.59 68.60 2.03 41.52 16 15 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 16 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 18 C -0.15 -8.34 8.64 22.48 0.19 -8.14 16 19 C -0.14 -7.12 9.92 22.11 0.22 -6.90 16 20 C 0.10 2.20 3.35 44.92 0.15 2.35 16 21 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 22 C -0.14 -3.61 9.29 71.98 0.67 -2.95 16 23 N -0.85 -18.11 9.12 -168.69 -1.54 -19.65 16 24 H 0.05 1.54 6.69 -2.38 -0.02 1.53 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.03 1.13 6.53 -2.39 -0.02 1.11 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.82 6.80 -2.39 -0.02 1.81 16 29 H 0.13 4.79 4.21 -2.91 -0.01 4.78 16 30 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 31 H 0.29 14.14 8.30 -92.70 -0.77 13.37 16 32 H 0.11 6.19 6.12 -2.91 -0.02 6.17 16 33 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.04 1.36 7.56 -2.39 -0.02 1.35 16 37 H 0.35 6.43 6.99 -89.69 -0.63 5.80 16 38 H 0.35 5.73 9.04 -89.69 -0.81 4.92 16 Total: -1.00 -63.10 301.11 2.69 -60.41 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -0.36 Total: 35.16 kcal Atomic # 6 Polarization: -62.30 SS G_CDS: 3.10 Total: -59.20 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: -1.30 Total: -64.99 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.78 Total: -12.89 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -63.10 2.69 -60.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720105944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.188 kcal (2) G-P(sol) polarization free energy of solvation -63.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds