Wall clock time and date at job start Mon Mar 30 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47079 * 2 1 4 4 C 1.42899 * 113.99778 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47163 * 180.02562 * 4 3 2 6 6 C 1.38265 * 119.99662 * 359.72866 * 5 4 3 7 7 C 1.38213 * 119.99497 * 179.74529 * 6 5 4 8 8 C 1.38255 * 120.00317 * 0.54539 * 7 6 5 9 9 C 1.38213 * 120.00076 * 359.70793 * 8 7 6 10 10 C 1.38205 * 120.00240 * 180.02562 * 5 4 3 11 11 C 1.50707 * 120.00086 * 0.02562 * 10 5 4 12 12 N 1.46894 * 109.46794 * 79.99798 * 11 10 5 13 13 C 1.46904 * 110.99647 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47045 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00102 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99941 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00123 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00096 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46880 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47457 * 119.99591 * 18 16 14 21 21 H 1.48492 * 109.47286 * 240.00104 * 18 16 14 22 22 H 1.09004 * 109.46930 * 299.99773 * 1 2 3 23 23 H 1.09004 * 109.47059 * 59.99375 * 1 2 3 24 24 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46930 * 240.00226 * 2 1 3 26 26 H 1.09000 * 109.47312 * 120.00170 * 2 1 3 27 27 H 1.08997 * 109.47442 * 300.00036 * 4 3 2 28 28 H 1.08997 * 109.47171 * 60.00232 * 4 3 2 29 29 H 1.07992 * 120.00095 * 359.97438 * 6 5 4 30 30 H 1.08003 * 120.00030 * 180.27856 * 7 6 5 31 31 H 1.08005 * 119.99955 * 179.72307 * 8 7 6 32 32 H 1.07997 * 120.00166 * 179.97438 * 9 8 7 33 33 H 1.08997 * 109.46948 * 200.00083 * 11 10 5 34 34 H 1.09002 * 109.46830 * 319.99846 * 11 10 5 35 35 H 1.00899 * 111.00330 * 303.95580 * 12 11 10 36 36 H 1.08998 * 109.47389 * 299.99565 * 13 12 11 37 37 H 1.08996 * 109.46982 * 60.00639 * 13 12 11 38 38 H 0.97000 * 119.99972 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 0.0001 6 6 2.8409 3.8928 -0.0045 7 6 3.1973 5.2282 0.0014 8 6 4.5324 5.5874 0.0006 9 6 5.5107 4.6111 0.0000 10 6 5.1541 3.2752 -0.0008 11 6 6.2209 2.2106 -0.0031 12 7 6.3961 1.6961 -1.3678 13 6 7.4303 0.6535 -1.4085 14 6 7.5812 0.1505 -2.8211 15 1 6.9702 0.5642 -3.6098 16 6 8.4991 -0.8378 -3.1066 17 7 9.2434 -1.3413 -2.1463 18 14 8.6866 -1.4609 -4.8576 19 1 7.7415 -0.7362 -5.7447 20 1 10.0780 -1.2258 -5.3204 21 1 8.3898 -2.9152 -4.9000 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8341 0.9765 0.8891 28 1 3.8333 0.9768 -0.8908 29 1 1.7980 3.6122 -0.0091 30 1 2.4329 5.9911 0.0023 31 1 4.8108 6.6309 0.0007 32 1 6.5536 4.8916 -0.0011 33 1 7.1605 2.6371 0.3479 34 1 5.9226 1.3960 0.6569 35 1 5.5231 1.3537 -1.7401 36 1 8.3785 1.0688 -1.0672 37 1 7.1399 -0.1718 -0.7585 38 1 9.8890 -2.0369 -2.3471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037500827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:49 Heat of formation + Delta-G solvation = -33.452139 kcal Electronic energy + Delta-G solvation = -17715.043753 eV Core-core repulsion = 14942.883150 eV Total energy + Delta-G solvation = -2772.160603 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.56659 -37.66868 -35.39357 -32.83245 -32.27551 -30.82827 -30.42820 -27.09118 -25.92810 -24.17166 -22.89855 -21.58520 -21.48782 -20.38558 -16.83905 -16.61946 -16.17726 -16.14091 -15.15068 -14.70982 -14.59300 -14.17387 -14.00794 -13.85472 -13.25812 -13.02730 -12.61352 -12.37736 -12.19957 -12.15321 -11.58565 -11.43102 -11.38996 -11.24625 -10.86842 -10.76198 -10.65373 -10.45503 -9.96266 -9.71767 -9.21681 -8.57933 -8.50402 -8.37506 -7.33851 -6.06155 -4.08220 1.52652 1.64902 3.29394 3.36843 3.42341 3.61090 3.95276 4.41854 4.90839 4.97358 5.05953 5.13439 5.19510 5.26119 5.29910 5.32547 5.38004 5.50432 5.55742 5.60538 5.67404 5.79944 5.82038 5.98136 6.01352 6.08023 6.28691 6.31452 6.63002 6.72013 6.89278 7.17639 7.20715 7.25526 7.36231 7.75248 8.08217 8.33280 8.55204 9.01216 9.57014 11.04934 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.005516 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.925095 B = 5074.604015 C = 6268.680762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.387 6.387 4 C 0.103 3.897 5 C -0.085 4.085 6 C -0.099 4.099 7 C -0.132 4.132 8 C -0.123 4.123 9 C -0.103 4.103 10 C -0.061 4.061 11 C 0.090 3.910 12 N -0.682 5.682 13 C 0.193 3.807 14 C -0.514 4.514 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.285 1.285 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.075 0.925 34 H 0.028 0.972 35 H 0.327 0.673 36 H 0.030 0.970 37 H -0.013 1.013 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.258 7.313 6.566 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.306 6.306 4 C 0.026 3.974 5 C -0.086 4.086 6 C -0.117 4.117 7 C -0.150 4.150 8 C -0.141 4.141 9 C -0.122 4.122 10 C -0.062 4.062 11 C -0.039 4.039 12 N -0.313 5.313 13 C 0.066 3.934 14 C -0.553 4.553 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.211 1.211 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.146 0.854 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.144 0.856 36 H 0.048 0.952 37 H 0.004 0.996 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.783 7.822 6.408 17.094 hybrid contribution 0.008 -1.401 -0.485 1.482 sum -13.775 6.421 5.923 16.312 Atomic orbital electron populations 1.21729 0.93837 1.02142 1.02937 1.22469 0.95399 0.83788 1.00500 1.87800 1.20882 1.26403 1.95563 1.21257 0.81076 0.93923 1.01101 1.19498 0.93034 0.94113 1.01950 1.20899 0.99569 0.92077 0.99115 1.21073 0.96088 0.95994 1.01849 1.21111 0.93101 0.99087 1.00794 1.20984 0.99529 0.91915 0.99740 1.19749 0.93045 0.95084 0.98320 1.20916 0.96179 0.94262 0.92539 1.60782 1.12040 1.41531 1.16940 1.19606 0.89885 0.86880 0.97014 1.21215 1.20831 1.19286 0.93924 0.91888 1.24985 0.95630 0.96419 0.97487 1.69972 1.23787 1.27979 1.31993 0.86429 0.78019 0.78407 0.84500 1.19622 1.20935 1.21077 0.92031 0.91867 0.91176 0.92981 0.93389 0.92084 0.91460 0.85449 0.86515 0.86416 0.85841 0.90651 0.95391 0.85562 0.95201 0.99569 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.05 0.63 6.66 37.16 0.25 0.88 16 3 O -0.39 -5.40 8.82 -35.23 -0.31 -5.71 16 4 C 0.10 1.52 5.11 36.00 0.18 1.70 16 5 C -0.09 -1.33 5.87 -104.62 -0.61 -1.94 16 6 C -0.10 -1.40 9.38 -39.58 -0.37 -1.77 16 7 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 8 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 9 C -0.10 -1.53 9.67 -39.58 -0.38 -1.91 16 10 C -0.06 -1.00 5.39 -104.62 -0.56 -1.57 16 11 C 0.09 1.64 5.27 -4.98 -0.03 1.62 16 12 N -0.68 -14.85 6.48 -116.34 -0.75 -15.61 16 13 C 0.19 5.04 5.44 -4.97 -0.03 5.01 16 14 C -0.51 -14.60 9.32 -34.44 -0.32 -14.92 16 15 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 18 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.87 7.55 -51.93 -0.39 0.48 16 28 H 0.07 1.06 6.44 -51.93 -0.33 0.73 16 29 H 0.13 1.71 7.01 -52.49 -0.37 1.34 16 30 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 32 H 0.12 1.70 8.04 -52.49 -0.42 1.28 16 33 H 0.08 1.36 8.00 -51.93 -0.42 0.94 16 34 H 0.03 0.50 7.06 -51.93 -0.37 0.13 16 35 H 0.33 6.90 6.91 -39.29 -0.27 6.63 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -30.53 317.62 -8.87 -39.40 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.92 Total: 2.92 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.39 Total: -16.46 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: -0.02 Total: -41.61 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.31 Total: -5.71 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.53 -8.87 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037500827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.946 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds