Wall clock time and date at job start Mon Mar 30 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47079 * 2 1 4 4 C 1.42899 * 113.99778 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47163 * 180.02562 * 4 3 2 6 6 C 1.38265 * 119.99662 * 359.72866 * 5 4 3 7 7 C 1.38213 * 119.99497 * 179.74529 * 6 5 4 8 8 C 1.38255 * 120.00317 * 0.54539 * 7 6 5 9 9 C 1.38213 * 120.00076 * 359.70793 * 8 7 6 10 10 C 1.38205 * 120.00240 * 180.02562 * 5 4 3 11 11 C 1.50707 * 120.00086 * 0.02562 * 10 5 4 12 12 N 1.46894 * 109.46794 * 79.99798 * 11 10 5 13 13 C 1.46904 * 110.99647 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47045 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00102 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99941 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00123 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00096 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46880 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47457 * 119.99591 * 18 16 14 21 21 H 1.48492 * 109.47286 * 240.00104 * 18 16 14 22 22 H 1.09004 * 109.46930 * 299.99773 * 1 2 3 23 23 H 1.09004 * 109.47059 * 59.99375 * 1 2 3 24 24 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46930 * 240.00226 * 2 1 3 26 26 H 1.09000 * 109.47312 * 120.00170 * 2 1 3 27 27 H 1.08997 * 109.47442 * 300.00036 * 4 3 2 28 28 H 1.08997 * 109.47171 * 60.00232 * 4 3 2 29 29 H 1.07992 * 120.00095 * 359.97438 * 6 5 4 30 30 H 1.08003 * 120.00030 * 180.27856 * 7 6 5 31 31 H 1.08005 * 119.99955 * 179.72307 * 8 7 6 32 32 H 1.07997 * 120.00166 * 179.97438 * 9 8 7 33 33 H 1.08997 * 109.46948 * 200.00083 * 11 10 5 34 34 H 1.09002 * 109.46830 * 319.99846 * 11 10 5 35 35 H 1.00899 * 111.00330 * 303.95580 * 12 11 10 36 36 H 1.08998 * 109.47389 * 299.99565 * 13 12 11 37 37 H 1.08996 * 109.46982 * 60.00639 * 13 12 11 38 38 H 0.97000 * 119.99972 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 0.0001 6 6 2.8409 3.8928 -0.0045 7 6 3.1973 5.2282 0.0014 8 6 4.5324 5.5874 0.0006 9 6 5.5107 4.6111 0.0000 10 6 5.1541 3.2752 -0.0008 11 6 6.2209 2.2106 -0.0031 12 7 6.3961 1.6961 -1.3678 13 6 7.4303 0.6535 -1.4085 14 6 7.5812 0.1505 -2.8211 15 1 6.9702 0.5642 -3.6098 16 6 8.4991 -0.8378 -3.1066 17 7 9.2434 -1.3413 -2.1463 18 14 8.6866 -1.4609 -4.8576 19 1 7.7415 -0.7362 -5.7447 20 1 10.0780 -1.2258 -5.3204 21 1 8.3898 -2.9152 -4.9000 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8341 0.9765 0.8891 28 1 3.8333 0.9768 -0.8908 29 1 1.7980 3.6122 -0.0091 30 1 2.4329 5.9911 0.0023 31 1 4.8108 6.6309 0.0007 32 1 6.5536 4.8916 -0.0011 33 1 7.1605 2.6371 0.3479 34 1 5.9226 1.3960 0.6569 35 1 5.5231 1.3537 -1.7401 36 1 8.3785 1.0688 -1.0672 37 1 7.1399 -0.1718 -0.7585 38 1 9.8890 -2.0369 -2.3471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037500827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:49 Heat of formation + Delta-G solvation = -52.190533 kcal Electronic energy + Delta-G solvation = -17715.856311 eV Core-core repulsion = 14942.883150 eV Total energy + Delta-G solvation = -2772.973160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72266 -38.72780 -37.10465 -34.76264 -33.39532 -32.28366 -31.38875 -28.91988 -27.15064 -25.78605 -23.80886 -23.48225 -22.72263 -21.57767 -18.67885 -17.83801 -17.45329 -17.19777 -16.80589 -16.36691 -15.84554 -15.61044 -15.25748 -15.02261 -14.66158 -14.62559 -13.95731 -13.50439 -13.45033 -13.27348 -13.15542 -13.03981 -12.69465 -12.65169 -12.37549 -12.25908 -12.10397 -11.83376 -11.65474 -11.28901 -10.77299 -10.69062 -9.71352 -9.53494 -9.15945 -8.24970 -6.36364 0.40174 0.52639 1.39836 1.40881 1.54756 2.38466 2.58373 2.82230 3.08432 3.65282 3.84313 3.90856 4.08732 4.12290 4.16421 4.25128 4.32000 4.39911 4.41960 4.47449 4.62003 4.69847 4.78508 4.90954 5.01857 5.03487 5.10068 5.19450 5.22289 5.25039 5.55631 5.58570 5.64561 5.72931 5.97542 6.12705 6.17756 6.37964 6.63340 6.83371 7.34661 8.86728 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.005516 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.925095 B = 5074.604015 C = 6268.680762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 O -0.393 6.393 4 C 0.107 3.893 5 C -0.098 4.098 6 C -0.106 4.106 7 C -0.123 4.123 8 C -0.119 4.119 9 C -0.114 4.114 10 C -0.082 4.082 11 C 0.095 3.905 12 N -0.681 5.681 13 C 0.208 3.792 14 C -0.536 4.536 15 H 0.062 0.938 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.973 3.027 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.276 1.276 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.135 0.865 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.331 0.669 36 H 0.004 0.996 37 H -0.036 1.036 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.653 8.388 5.874 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 O -0.313 6.313 4 C 0.031 3.969 5 C -0.099 4.099 6 C -0.124 4.124 7 C -0.141 4.141 8 C -0.137 4.137 9 C -0.133 4.133 10 C -0.083 4.083 11 C -0.033 4.033 12 N -0.312 5.312 13 C 0.080 3.920 14 C -0.575 4.575 15 H 0.080 0.920 16 C -0.194 4.194 17 N -0.573 5.573 18 Si 0.797 3.203 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.201 1.201 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.153 0.847 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.146 0.854 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.149 0.851 36 H 0.022 0.978 37 H -0.018 1.018 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.198 8.909 5.727 18.524 hybrid contribution 0.388 -1.679 -0.202 1.735 sum -14.810 7.230 5.525 17.381 Atomic orbital electron populations 1.21729 0.91805 1.03506 1.03018 1.22718 0.97061 0.82770 1.00602 1.87786 1.20060 1.27922 1.95551 1.21115 0.81756 0.93838 1.00219 1.19608 0.93099 0.94670 1.02490 1.21086 0.99580 0.92611 0.99116 1.21480 0.96911 0.96055 0.99691 1.21461 0.92730 1.00197 0.99299 1.21186 1.00545 0.91722 0.99802 1.19589 0.92672 0.95102 1.00895 1.20867 0.97118 0.94914 0.90444 1.60658 1.11378 1.39575 1.19559 1.19254 0.89989 0.86983 0.95761 1.21532 1.21275 1.19935 0.94709 0.92025 1.25923 0.94994 0.96398 1.02123 1.70089 1.24313 1.28479 1.34379 0.85288 0.78185 0.78018 0.78828 1.18855 1.20257 1.20103 0.91660 0.92017 0.89194 0.93417 0.92819 0.92222 0.93133 0.84748 0.83217 0.83282 0.85364 0.90948 0.95428 0.85145 0.97789 1.01837 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 10.28 71.98 0.74 -1.69 16 2 C 0.04 1.00 6.66 71.98 0.48 1.48 16 3 O -0.39 -10.87 8.82 -148.98 -1.31 -12.19 16 4 C 0.11 3.24 5.11 71.24 0.36 3.60 16 5 C -0.10 -3.02 5.87 -19.87 -0.12 -3.13 16 6 C -0.11 -2.83 9.38 22.27 0.21 -2.63 16 7 C -0.12 -2.78 10.05 22.27 0.22 -2.55 16 8 C -0.12 -2.76 10.05 22.27 0.22 -2.53 16 9 C -0.11 -3.25 9.67 22.27 0.22 -3.04 16 10 C -0.08 -2.68 5.39 -19.86 -0.11 -2.78 16 11 C 0.10 3.59 5.27 85.56 0.45 4.04 16 12 N -0.68 -30.61 6.48 -521.98 -3.38 -33.99 16 13 C 0.21 11.32 5.44 85.56 0.47 11.78 16 14 C -0.54 -31.05 9.32 25.60 0.24 -30.81 16 15 H 0.06 3.51 7.81 -2.91 -0.02 3.48 16 16 C 0.00 0.23 5.46 84.65 0.46 0.69 16 17 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 18 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.77 7.55 -2.39 -0.02 1.75 16 28 H 0.05 1.67 6.44 -2.39 -0.02 1.66 16 29 H 0.13 3.36 7.01 -2.91 -0.02 3.34 16 30 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.13 3.44 8.04 -2.91 -0.02 3.41 16 33 H 0.07 2.71 8.00 -2.39 -0.02 2.69 16 34 H 0.03 1.03 7.06 -2.39 -0.02 1.02 16 35 H 0.33 14.43 6.91 -89.69 -0.62 13.81 16 36 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 37 H -0.04 -2.08 8.14 -2.39 -0.02 -2.10 16 38 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -65.50 317.62 1.87 -63.63 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.41 Total: 19.69 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 3.85 Total: -27.57 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -3.10 Total: -90.09 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.31 Total: -12.19 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -65.50 1.87 -63.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037500827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.436 kcal (2) G-P(sol) polarization free energy of solvation -65.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds