Wall clock time and date at job start Mon Mar 30 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46934 * 2 1 4 4 C 1.35904 * 116.99647 * 180.02562 * 3 2 1 5 5 C 1.38753 * 120.05477 * 359.72052 * 4 3 2 6 6 C 1.38126 * 119.94231 * 179.70236 * 5 4 3 7 7 C 1.38293 * 120.05237 * 0.59807 * 6 5 4 8 8 C 1.38242 * 120.11265 * 359.68067 * 7 6 5 9 9 C 1.50695 * 119.97099 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47220 * 269.97351 * 9 8 7 11 11 C 1.46904 * 111.00270 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47263 * 34.99508 * 11 10 9 13 13 C 1.53002 * 109.46862 * 275.00286 * 11 10 9 14 14 C 1.50696 * 109.47192 * 155.00114 * 11 10 9 15 15 H 1.08005 * 120.00331 * 35.00382 * 14 11 10 16 16 C 1.37881 * 119.99919 * 215.00174 * 14 11 10 17 17 N 1.31512 * 119.99755 * 184.92004 * 16 14 11 18 18 Si 1.86798 * 119.99919 * 4.91127 * 16 14 11 19 19 H 1.48501 * 109.47091 * 84.83244 * 18 16 14 20 20 H 1.48501 * 109.47125 * 204.83042 * 18 16 14 21 21 H 1.48500 * 109.47182 * 324.82924 * 18 16 14 22 22 C 1.38162 * 120.05591 * 0.02562 * 8 7 6 23 23 H 1.09000 * 109.47019 * 60.00087 * 1 2 3 24 24 H 1.08995 * 109.46940 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47005 * 300.00024 * 1 2 3 26 26 H 1.09000 * 109.47019 * 119.99913 * 2 1 3 27 27 H 1.08991 * 109.47161 * 239.99686 * 2 1 3 28 28 H 1.07995 * 120.03162 * 359.97438 * 5 4 3 29 29 H 1.07997 * 119.97371 * 180.29644 * 6 5 4 30 30 H 1.08003 * 119.94287 * 179.69575 * 7 6 5 31 31 H 1.08999 * 109.47626 * 29.97820 * 9 8 7 32 32 H 1.09002 * 109.47556 * 149.97332 * 9 8 7 33 33 H 1.00901 * 111.00059 * 303.95675 * 10 9 8 34 34 H 1.09003 * 109.47309 * 175.05167 * 13 11 10 35 35 H 1.09005 * 109.47057 * 295.04869 * 13 11 10 36 36 H 1.09001 * 109.47472 * 55.04729 * 13 11 10 37 37 H 0.97005 * 119.99751 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.03082 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1999 0.4257 0.0048 6 6 5.5689 0.6093 -0.0020 7 6 6.0962 1.8878 -0.0016 8 6 5.2552 2.9849 -0.0011 9 6 5.8333 4.3766 -0.0012 10 7 6.0212 4.8289 1.3837 11 6 6.5839 6.1853 1.4228 12 1 6.1872 6.7674 0.5910 13 6 8.1079 6.1086 1.3103 14 6 6.2089 6.8475 2.7234 15 1 6.1426 6.2616 3.6283 16 6 5.9503 8.2014 2.7583 17 7 5.7181 8.7971 3.9076 18 14 5.9301 9.1896 1.1732 19 1 4.5882 9.0903 0.5451 20 1 6.2323 10.6123 1.4730 21 1 6.9538 8.6518 0.2416 22 6 3.8851 2.8066 -0.0004 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.7886 -0.5728 0.0098 29 1 6.2280 -0.2462 -0.0027 30 1 7.1670 2.0293 -0.0019 31 1 6.7945 4.3708 -0.5152 32 1 5.1507 5.0536 -0.5151 33 1 5.1556 4.7819 1.9001 34 1 8.5191 7.1164 1.2508 35 1 8.5119 5.6026 2.1872 36 1 8.3785 5.5522 0.4129 37 1 5.5358 9.7495 3.9321 38 1 3.2284 3.6640 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037871532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:22 Heat of formation + Delta-G solvation = -23.328048 kcal Electronic energy + Delta-G solvation = -17592.512905 eV Core-core repulsion = 14820.791316 eV Total energy + Delta-G solvation = -2771.721589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09017 -37.84280 -35.83359 -32.75132 -32.10741 -31.30911 -29.51275 -28.58773 -25.49575 -24.63893 -23.28733 -22.37214 -20.60373 -19.66197 -17.93437 -16.87113 -16.19592 -16.02939 -15.87232 -15.02686 -14.34384 -14.01094 -13.71398 -13.39839 -13.31234 -13.13446 -12.81069 -12.50113 -12.26472 -11.97602 -11.79807 -11.69310 -11.27808 -11.01835 -10.90172 -10.81615 -10.64577 -10.49022 -10.31077 -9.77598 -9.02948 -8.70533 -8.58794 -8.06491 -7.42058 -6.11363 -4.12020 1.45197 1.60628 3.15198 3.25300 3.34198 3.35987 3.89591 4.37928 4.70955 4.72483 4.89458 4.98485 5.01601 5.14441 5.21632 5.29316 5.45431 5.50878 5.56074 5.60698 5.73006 5.80152 5.92074 6.10044 6.22197 6.40133 6.42431 6.55353 6.66717 6.83163 6.85413 6.89485 6.91508 7.41791 7.48152 7.63056 7.95391 8.39717 8.65560 8.98416 9.52544 11.01684 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.026623 B = 0.004643 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.458462 B = 6029.293504 C = 6637.837111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.318 6.318 4 C 0.126 3.874 5 C -0.217 4.217 6 C -0.085 4.085 7 C -0.136 4.136 8 C -0.028 4.028 9 C 0.091 3.909 10 N -0.677 5.677 11 C 0.179 3.821 12 H 0.004 0.996 13 C -0.125 4.125 14 C -0.519 4.519 15 H 0.080 0.920 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.147 4.147 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.342 0.658 34 H 0.040 0.960 35 H 0.051 0.949 36 H 0.020 0.980 37 H 0.265 0.735 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 -17.230 -10.462 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.081 3.919 5 C -0.236 4.236 6 C -0.103 4.103 7 C -0.155 4.155 8 C -0.029 4.029 9 C -0.038 4.038 10 N -0.310 5.310 11 C 0.071 3.929 12 H 0.022 0.978 13 C -0.183 4.183 14 C -0.557 4.557 15 H 0.098 0.902 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.166 4.166 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.161 0.839 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.136 -17.191 -10.296 20.686 hybrid contribution -0.734 0.899 -0.977 1.517 sum -5.870 -16.292 -11.272 20.663 Atomic orbital electron populations 1.21776 0.92923 1.02640 1.03608 1.22725 0.95725 0.82345 1.01184 1.86073 1.19372 1.28881 1.88901 1.18913 0.81947 0.94105 0.96946 1.21123 0.94496 0.97556 1.10408 1.20887 0.94155 0.97203 0.98030 1.20958 1.00003 0.91649 1.02874 1.19801 0.91908 0.96101 0.95075 1.20984 0.99239 0.90323 0.93289 1.60780 1.33038 1.27956 1.09177 1.19596 0.92016 0.84778 0.96518 0.97802 1.21844 0.98276 0.99237 0.98984 1.21079 1.46890 0.93527 0.94197 0.90203 1.25031 0.94352 0.97611 0.95927 1.69903 1.47981 1.10756 1.24689 0.86891 0.78944 0.79379 0.84509 1.20313 1.21379 1.18966 1.20362 0.94905 0.94788 1.06528 0.91580 0.90551 0.91423 0.92151 0.92303 0.86065 0.86108 0.85778 0.90694 0.95155 0.83906 0.94051 0.92941 0.96068 0.92556 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.52 5.46 37.16 0.20 0.73 16 3 O -0.32 -4.32 10.14 -19.44 -0.20 -4.51 16 4 C 0.13 1.81 6.69 -39.22 -0.26 1.55 16 5 C -0.22 -2.73 9.04 -39.43 -0.36 -3.09 16 6 C -0.08 -1.06 10.04 -39.60 -0.40 -1.46 16 7 C -0.14 -1.95 9.70 -39.56 -0.38 -2.33 16 8 C -0.03 -0.45 5.39 -104.65 -0.56 -1.01 16 9 C 0.09 1.60 5.61 -4.98 -0.03 1.57 16 10 N -0.68 -14.22 6.29 -109.22 -0.69 -14.91 16 11 C 0.18 4.25 2.26 -68.86 -0.16 4.10 16 12 H 0.00 0.10 4.95 -51.93 -0.26 -0.15 16 13 C -0.12 -2.75 9.42 37.16 0.35 -2.40 16 14 C -0.52 -14.53 8.84 -34.44 -0.30 -14.83 16 15 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 18 Si 0.88 21.51 26.99 -169.99 -4.59 16.92 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.26 -6.26 6.82 56.52 0.39 -5.87 16 22 C -0.15 -2.30 9.64 -39.43 -0.38 -2.68 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 27 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 28 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.07 1.26 7.31 -51.93 -0.38 0.88 16 32 H 0.03 0.54 8.00 -51.93 -0.42 0.12 16 33 H 0.34 7.42 8.34 -39.29 -0.33 7.10 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.02 0.40 7.36 -51.93 -0.38 0.02 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -30.60 315.07 -7.79 -38.39 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.84 Total: 4.45 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.99 Total: -18.62 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.09 Total: -41.38 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.20 Total: -4.51 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.59 Total: 16.92 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.60 -7.79 -38.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.061 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds