Wall clock time and date at job start Mon Mar 30 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46934 * 2 1 4 4 C 1.35904 * 116.99647 * 180.02562 * 3 2 1 5 5 C 1.38753 * 120.05477 * 359.72052 * 4 3 2 6 6 C 1.38126 * 119.94231 * 179.70236 * 5 4 3 7 7 C 1.38293 * 120.05237 * 0.59807 * 6 5 4 8 8 C 1.38242 * 120.11265 * 359.68067 * 7 6 5 9 9 C 1.50695 * 119.97099 * 180.02562 * 8 7 6 10 10 N 1.46897 * 109.47220 * 269.97351 * 9 8 7 11 11 C 1.46904 * 111.00270 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47263 * 34.99508 * 11 10 9 13 13 C 1.53002 * 109.46862 * 275.00286 * 11 10 9 14 14 C 1.50696 * 109.47192 * 155.00114 * 11 10 9 15 15 H 1.08005 * 120.00331 * 35.00382 * 14 11 10 16 16 C 1.37881 * 119.99919 * 215.00174 * 14 11 10 17 17 N 1.31512 * 119.99755 * 184.92004 * 16 14 11 18 18 Si 1.86798 * 119.99919 * 4.91127 * 16 14 11 19 19 H 1.48501 * 109.47091 * 84.83244 * 18 16 14 20 20 H 1.48501 * 109.47125 * 204.83042 * 18 16 14 21 21 H 1.48500 * 109.47182 * 324.82924 * 18 16 14 22 22 C 1.38162 * 120.05591 * 0.02562 * 8 7 6 23 23 H 1.09000 * 109.47019 * 60.00087 * 1 2 3 24 24 H 1.08995 * 109.46940 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47005 * 300.00024 * 1 2 3 26 26 H 1.09000 * 109.47019 * 119.99913 * 2 1 3 27 27 H 1.08991 * 109.47161 * 239.99686 * 2 1 3 28 28 H 1.07995 * 120.03162 * 359.97438 * 5 4 3 29 29 H 1.07997 * 119.97371 * 180.29644 * 6 5 4 30 30 H 1.08003 * 119.94287 * 179.69575 * 7 6 5 31 31 H 1.08999 * 109.47626 * 29.97820 * 9 8 7 32 32 H 1.09002 * 109.47556 * 149.97332 * 9 8 7 33 33 H 1.00901 * 111.00059 * 303.95675 * 10 9 8 34 34 H 1.09003 * 109.47309 * 175.05167 * 13 11 10 35 35 H 1.09005 * 109.47057 * 295.04869 * 13 11 10 36 36 H 1.09001 * 109.47472 * 55.04729 * 13 11 10 37 37 H 0.97005 * 119.99751 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.03082 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1999 0.4257 0.0048 6 6 5.5689 0.6093 -0.0020 7 6 6.0962 1.8878 -0.0016 8 6 5.2552 2.9849 -0.0011 9 6 5.8333 4.3766 -0.0012 10 7 6.0212 4.8289 1.3837 11 6 6.5839 6.1853 1.4228 12 1 6.1872 6.7674 0.5910 13 6 8.1079 6.1086 1.3103 14 6 6.2089 6.8475 2.7234 15 1 6.1426 6.2616 3.6283 16 6 5.9503 8.2014 2.7583 17 7 5.7181 8.7971 3.9076 18 14 5.9301 9.1896 1.1732 19 1 4.5882 9.0903 0.5451 20 1 6.2323 10.6123 1.4730 21 1 6.9538 8.6518 0.2416 22 6 3.8851 2.8066 -0.0004 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.7886 -0.5728 0.0098 29 1 6.2280 -0.2462 -0.0027 30 1 7.1670 2.0293 -0.0019 31 1 6.7945 4.3708 -0.5152 32 1 5.1507 5.0536 -0.5151 33 1 5.1556 4.7819 1.9001 34 1 8.5191 7.1164 1.2508 35 1 8.5119 5.6026 2.1872 36 1 8.3785 5.5522 0.4129 37 1 5.5358 9.7495 3.9321 38 1 3.2284 3.6640 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:22 Heat of formation + Delta-G solvation = -43.139449 kcal Electronic energy + Delta-G solvation = -17593.371992 eV Core-core repulsion = 14820.791316 eV Total energy + Delta-G solvation = -2772.580676 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.10511 -38.97117 -37.45134 -34.63965 -32.90059 -32.86983 -30.60838 -30.03038 -27.38263 -26.06682 -24.23363 -23.42941 -21.71856 -21.49852 -19.33606 -18.62126 -17.19573 -17.02046 -16.97801 -16.68864 -15.75591 -15.52872 -15.30978 -14.59867 -14.51427 -14.35829 -14.19362 -13.77532 -13.45317 -13.24836 -12.93421 -12.87916 -12.74792 -12.58636 -12.46240 -12.30543 -12.05561 -11.83046 -11.62873 -11.60054 -11.05223 -10.77224 -9.83337 -9.12695 -9.09288 -8.32575 -6.38332 0.36321 0.53521 1.31762 1.33201 1.44264 2.27402 2.30840 2.78930 3.02807 3.68805 3.88401 3.89422 4.06588 4.13042 4.18058 4.32995 4.37995 4.46075 4.49831 4.58315 4.69285 4.76172 4.89194 4.91837 4.93878 5.00210 5.11026 5.12495 5.20471 5.36818 5.48708 5.52605 5.69043 5.74998 5.86461 6.01859 6.50129 6.51500 6.65967 6.79951 7.30810 8.84281 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.026623 B = 0.004643 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.458462 B = 6029.293504 C = 6637.837111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.339 6.339 4 C 0.117 3.883 5 C -0.211 4.211 6 C -0.079 4.079 7 C -0.145 4.145 8 C -0.044 4.044 9 C 0.095 3.905 10 N -0.679 5.679 11 C 0.181 3.819 12 H 0.005 0.995 13 C -0.120 4.120 14 C -0.523 4.523 15 H 0.035 0.965 16 C 0.016 3.984 17 N -0.944 5.944 18 Si 0.941 3.059 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.245 1.245 22 C -0.169 4.169 23 H 0.061 0.939 24 H 0.103 0.897 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.133 0.867 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.333 0.667 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.267 0.733 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.222 -19.220 -12.657 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.254 6.254 4 C 0.072 3.928 5 C -0.230 4.230 6 C -0.096 4.096 7 C -0.164 4.164 8 C -0.045 4.045 9 C -0.034 4.034 10 N -0.310 5.310 11 C 0.073 3.927 12 H 0.023 0.977 13 C -0.179 4.179 14 C -0.562 4.562 15 H 0.053 0.947 16 C -0.182 4.182 17 N -0.584 5.584 18 Si 0.765 3.235 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.168 1.168 22 C -0.189 4.189 23 H 0.080 0.920 24 H 0.122 0.878 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.151 0.849 31 H 0.106 0.894 32 H 0.045 0.955 33 H 0.151 0.849 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.799 -19.211 -12.506 23.420 hybrid contribution -0.907 1.353 -0.233 1.646 sum -5.706 -17.858 -12.739 22.666 Atomic orbital electron populations 1.21819 0.91717 1.04225 1.02966 1.23074 0.96775 0.80711 1.02398 1.86060 1.18989 1.31571 1.88795 1.19036 0.82764 0.94147 0.96891 1.21487 0.94435 0.98343 1.08693 1.21274 0.94641 0.97510 0.96205 1.21155 1.00343 0.92008 1.02911 1.19654 0.92189 0.95605 0.97013 1.20992 0.99971 0.91443 0.91003 1.60716 1.32642 1.26118 1.11525 1.19501 0.93442 0.85838 0.93961 0.97708 1.21745 0.96495 0.99528 1.00113 1.21293 1.46553 0.93635 0.94688 0.94663 1.25895 0.94010 0.98822 0.99461 1.70051 1.49777 1.11285 1.27293 0.85830 0.79709 0.77680 0.80271 1.19594 1.20973 1.16802 1.20384 0.94974 0.95424 1.08078 0.91962 0.87814 0.92344 0.91165 0.90664 0.83075 0.82720 0.84863 0.89448 0.95506 0.84920 0.94324 0.93879 0.92884 0.92383 0.86756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.04 0.75 5.46 71.98 0.39 1.14 16 3 O -0.34 -8.91 10.14 -92.47 -0.94 -9.85 16 4 C 0.12 3.24 6.69 22.51 0.15 3.39 16 5 C -0.21 -4.71 9.04 22.37 0.20 -4.50 16 6 C -0.08 -1.71 10.04 22.26 0.22 -1.49 16 7 C -0.15 -3.86 9.70 22.28 0.22 -3.65 16 8 C -0.04 -1.37 5.39 -19.88 -0.11 -1.48 16 9 C 0.09 3.25 5.61 85.56 0.48 3.73 16 10 N -0.68 -28.55 6.29 -499.47 -3.14 -31.69 16 11 C 0.18 8.55 2.26 44.17 0.10 8.65 16 12 H 0.01 0.25 4.95 -2.39 -0.01 0.24 16 13 C -0.12 -5.12 9.42 71.98 0.68 -4.44 16 14 C -0.52 -30.14 8.84 25.60 0.23 -29.91 16 15 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 16 C 0.02 0.95 5.47 84.66 0.46 1.42 16 17 N -0.94 -59.16 13.96 21.45 0.30 -58.86 16 18 Si 0.94 44.26 26.99 68.60 1.85 46.11 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.24 -10.62 6.82 99.48 0.68 -9.94 16 22 C -0.17 -5.34 9.64 22.36 0.22 -5.12 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 24 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 1.03 7.65 -2.39 -0.02 1.01 16 27 H 0.08 1.01 7.67 -2.39 -0.02 0.99 16 28 H 0.15 2.40 6.30 -2.91 -0.02 2.38 16 29 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.13 3.23 8.06 -2.91 -0.02 3.20 16 31 H 0.09 2.76 7.31 -2.39 -0.02 2.74 16 32 H 0.03 0.94 8.00 -2.39 -0.02 0.92 16 33 H 0.33 14.92 8.34 -89.69 -0.75 14.17 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.05 1.90 7.36 -2.39 -0.02 1.88 16 37 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 38 H 0.11 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -67.52 315.07 2.31 -65.21 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.26 Total: 22.60 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.98 Total: -33.51 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -2.84 Total: -90.55 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.94 Total: -9.85 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.85 Total: 46.11 kcal Total: -67.52 2.31 -65.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.069 kcal (2) G-P(sol) polarization free energy of solvation -67.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds