Wall clock time and date at job start Mon Mar 30 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47360 * 2 1 4 4 C 1.53001 * 109.46930 * 120.00394 * 2 1 3 5 5 N 1.46897 * 109.47283 * 64.99674 * 4 2 1 6 6 C 1.46895 * 111.00364 * 193.95074 * 5 4 2 7 7 C 1.50703 * 109.46754 * 66.04679 * 6 5 4 8 8 H 1.07997 * 120.00548 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99911 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00122 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 120.00124 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46953 * 90.00020 * 11 9 7 13 13 H 1.48499 * 109.47340 * 210.00522 * 11 9 7 14 14 H 1.48503 * 109.46965 * 329.99980 * 11 9 7 15 15 C 1.39504 * 110.99868 * 69.99986 * 5 4 2 16 16 C 1.39229 * 120.88503 * 60.00118 * 15 5 4 17 17 C 1.38047 * 119.14646 * 179.97438 * 16 15 5 18 18 N 1.31939 * 120.97498 * 359.97438 * 17 16 15 19 19 C 1.32012 * 121.94829 * 0.02562 * 18 17 16 20 20 C 1.38486 * 120.73751 * 0.25595 * 19 18 17 21 21 N 1.40071 * 120.51757 * 179.71886 * 20 19 18 22 22 H 1.08998 * 109.46633 * 59.99294 * 1 2 3 23 23 H 1.08995 * 109.47358 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46642 * 299.99677 * 1 2 3 25 25 H 1.09000 * 109.47032 * 240.00329 * 2 1 3 26 26 H 1.09001 * 109.47158 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47065 * 300.00505 * 3 2 1 28 28 H 1.09000 * 109.46780 * 60.00175 * 3 2 1 29 29 H 1.08998 * 109.47265 * 304.99385 * 4 2 1 30 30 H 1.09004 * 109.47020 * 184.99613 * 4 2 1 31 31 H 1.08999 * 109.47276 * 186.04891 * 6 5 4 32 32 H 1.08999 * 109.47458 * 306.05180 * 6 5 4 33 33 H 0.97000 * 120.00521 * 179.97438 * 10 9 7 34 34 H 1.08003 * 120.42214 * 359.97050 * 16 15 5 35 35 H 1.08001 * 119.51150 * 179.97438 * 17 16 15 36 36 H 1.08002 * 119.62630 * 179.97438 * 19 18 17 37 37 H 0.96997 * 120.00058 * 0.02562 * 21 20 19 38 38 H 0.96994 * 119.99499 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6513 -2.1367 1.1903 6 6 1.8245 -2.7851 2.4970 7 6 0.8566 -2.1883 3.4861 8 1 0.1802 -1.4060 3.1750 9 6 0.8346 -2.6411 4.7882 10 7 -0.0103 -2.1207 5.6511 11 14 2.0041 -3.9947 5.3263 12 1 3.2674 -3.3901 5.8199 13 1 1.3767 -4.7877 6.4138 14 1 2.2979 -4.8826 4.1727 15 6 2.3656 -2.8105 0.1994 16 6 3.7555 -2.8809 0.2430 17 6 4.4261 -3.5575 -0.7561 18 7 3.7694 -4.1343 -1.7445 19 6 2.4524 -4.0930 -1.8261 20 6 1.7043 -3.4298 -0.8678 21 7 0.3076 -3.3839 -0.9621 22 1 -0.3632 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5138 -0.8900 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 1.6055 -0.2618 2.1370 30 1 3.1264 -0.6445 1.2951 31 1 1.6330 -3.8538 2.4006 32 1 2.8447 -2.6290 2.8477 33 1 -0.0261 -2.4395 6.5671 34 1 4.3018 -2.4123 1.0482 35 1 5.5042 -3.6154 -0.7284 36 1 1.9532 -4.5780 -2.6520 37 1 -0.1431 -3.8190 -1.7027 38 1 -0.2090 -2.9170 -0.2869 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043416262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:18 Heat of formation + Delta-G solvation = 32.850611 kcal Electronic energy + Delta-G solvation = -18897.715049 eV Core-core repulsion = 16160.722301 eV Total energy + Delta-G solvation = -2736.992749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15688 -37.37497 -34.57359 -34.27439 -32.58021 -30.39853 -28.63472 -27.48985 -26.74242 -25.16029 -23.01919 -22.09840 -20.63055 -19.55760 -17.28595 -17.00645 -16.37909 -15.92765 -15.29950 -14.70404 -14.31705 -13.96926 -13.78043 -13.61273 -13.40631 -13.31192 -12.50557 -12.43380 -11.96850 -11.83857 -11.83082 -11.33847 -10.93394 -10.86353 -10.82992 -10.56940 -10.31587 -10.14557 -9.88487 -9.39870 -9.21458 -8.88959 -8.66054 -7.70372 -7.26119 -6.13781 -4.12101 1.56631 1.81750 3.22974 3.31415 3.34678 4.15838 4.23800 4.34979 4.45753 4.92397 5.18031 5.22140 5.29097 5.34412 5.42281 5.46839 5.80898 5.86744 5.95948 5.96896 6.05669 6.10007 6.23232 6.32678 6.36547 6.48870 6.53914 6.72879 6.74685 6.81960 6.87554 6.97719 7.49367 7.65507 7.74582 8.07967 8.13568 8.40346 8.56267 8.93410 9.47479 10.98670 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017210 B = 0.008851 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.568935 B = 3162.877327 C = 3975.656839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 C -0.144 4.144 4 C 0.069 3.931 5 N -0.489 5.489 6 C 0.170 3.830 7 C -0.512 4.512 8 H 0.084 0.916 9 C 0.072 3.928 10 N -0.897 5.897 11 Si 0.871 3.129 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.267 1.267 15 C 0.075 3.925 16 C -0.159 4.159 17 C 0.037 3.963 18 N -0.459 5.459 19 C 0.014 3.986 20 C 0.188 3.812 21 N -0.859 5.859 22 H 0.037 0.963 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.026 0.974 31 H 0.028 0.972 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.127 0.873 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.392 0.608 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 1.158 -12.558 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.057 4.057 5 N -0.210 5.210 6 C 0.046 3.954 7 C -0.550 4.550 8 H 0.102 0.898 9 C -0.130 4.130 10 N -0.535 5.535 11 Si 0.698 3.302 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.192 1.192 15 C -0.032 4.032 16 C -0.182 4.182 17 C -0.123 4.123 18 N -0.168 5.168 19 C -0.149 4.149 20 C 0.078 3.922 21 N -0.399 5.399 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.006 0.994 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.219 0.781 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.445 0.696 -13.078 13.542 hybrid contribution 0.634 -0.286 1.392 1.557 sum 4.079 0.411 -11.686 12.384 Atomic orbital electron populations 1.21692 0.94778 1.02187 1.00311 1.21074 0.96653 0.95039 0.98147 1.21796 1.00471 0.96487 1.01476 1.22223 0.97137 0.87505 0.98871 1.59428 1.53939 1.01747 1.05877 1.20223 0.95653 0.94919 0.84632 1.20969 1.19488 1.21736 0.92798 0.89844 1.24853 0.95359 0.96284 0.96520 1.69876 1.36556 1.42636 1.04445 0.86922 0.81502 0.82917 0.78812 1.20233 1.21078 1.19178 1.18908 0.90229 0.99586 0.94470 1.22531 0.95298 1.00334 1.00027 1.22154 0.99632 0.98696 0.91840 1.67421 1.08820 1.16947 1.23568 1.22016 0.89714 1.03528 0.99643 1.18798 0.85680 0.94293 0.93444 1.42490 1.03029 1.62663 1.31695 0.94356 0.91785 0.92727 0.92334 0.93244 0.93146 0.92482 0.88583 0.95627 0.95358 0.99350 0.92564 0.85545 0.83851 0.83665 0.78065 0.75590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.08 37.16 0.34 -1.64 16 2 C -0.09 -1.37 2.90 -90.62 -0.26 -1.64 16 3 C -0.14 -1.90 9.19 37.16 0.34 -1.56 16 4 C 0.07 1.25 4.10 -3.83 -0.02 1.24 16 5 N -0.49 -9.47 3.20 -172.09 -0.55 -10.02 16 6 C 0.17 3.96 3.45 -4.98 -0.02 3.94 16 7 C -0.51 -13.71 8.87 -34.44 -0.31 -14.02 16 8 H 0.08 2.40 7.47 -52.49 -0.39 2.01 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 11 Si 0.87 21.12 27.47 -169.99 -4.67 16.46 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 15 C 0.08 1.34 3.70 -83.34 -0.31 1.03 16 16 C -0.16 -2.68 8.67 -39.28 -0.34 -3.02 16 17 C 0.04 0.58 11.17 -17.58 -0.20 0.38 16 18 N -0.46 -7.45 10.36 -13.18 -0.14 -7.59 16 19 C 0.01 0.21 11.05 -17.38 -0.19 0.01 16 20 C 0.19 2.98 6.81 -83.34 -0.57 2.41 16 21 N -0.86 -11.57 9.11 32.62 0.30 -11.28 16 22 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.06 1.00 5.93 -51.93 -0.31 0.69 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.93 7.39 -51.93 -0.38 0.55 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 1.96 6.60 -51.93 -0.34 1.62 16 30 H 0.03 0.45 6.90 -51.93 -0.36 0.09 16 31 H 0.03 0.70 7.12 -51.93 -0.37 0.33 16 32 H -0.01 -0.26 7.19 -51.93 -0.37 -0.64 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.13 2.06 7.28 -52.48 -0.38 1.68 16 35 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.39 3.99 8.86 -40.82 -0.36 3.63 16 38 H 0.41 6.13 6.40 -40.82 -0.26 5.86 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -29.41 305.57 -6.96 -36.37 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.66 Total: 8.17 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.62 Total: -10.95 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.38 Total: -54.65 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.41 -6.96 -36.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043416262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.220 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds