Wall clock time and date at job start Mon Mar 30 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47360 * 2 1 4 4 C 1.53001 * 109.46930 * 120.00394 * 2 1 3 5 5 N 1.46897 * 109.47283 * 64.99674 * 4 2 1 6 6 C 1.46895 * 111.00364 * 193.95074 * 5 4 2 7 7 C 1.50703 * 109.46754 * 66.04679 * 6 5 4 8 8 H 1.07997 * 120.00548 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99911 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00122 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 120.00124 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46953 * 90.00020 * 11 9 7 13 13 H 1.48499 * 109.47340 * 210.00522 * 11 9 7 14 14 H 1.48503 * 109.46965 * 329.99980 * 11 9 7 15 15 C 1.39504 * 110.99868 * 69.99986 * 5 4 2 16 16 C 1.39229 * 120.88503 * 60.00118 * 15 5 4 17 17 C 1.38047 * 119.14646 * 179.97438 * 16 15 5 18 18 N 1.31939 * 120.97498 * 359.97438 * 17 16 15 19 19 C 1.32012 * 121.94829 * 0.02562 * 18 17 16 20 20 C 1.38486 * 120.73751 * 0.25595 * 19 18 17 21 21 N 1.40071 * 120.51757 * 179.71886 * 20 19 18 22 22 H 1.08998 * 109.46633 * 59.99294 * 1 2 3 23 23 H 1.08995 * 109.47358 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46642 * 299.99677 * 1 2 3 25 25 H 1.09000 * 109.47032 * 240.00329 * 2 1 3 26 26 H 1.09001 * 109.47158 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47065 * 300.00505 * 3 2 1 28 28 H 1.09000 * 109.46780 * 60.00175 * 3 2 1 29 29 H 1.08998 * 109.47265 * 304.99385 * 4 2 1 30 30 H 1.09004 * 109.47020 * 184.99613 * 4 2 1 31 31 H 1.08999 * 109.47276 * 186.04891 * 6 5 4 32 32 H 1.08999 * 109.47458 * 306.05180 * 6 5 4 33 33 H 0.97000 * 120.00521 * 179.97438 * 10 9 7 34 34 H 1.08003 * 120.42214 * 359.97050 * 16 15 5 35 35 H 1.08001 * 119.51150 * 179.97438 * 17 16 15 36 36 H 1.08002 * 119.62630 * 179.97438 * 19 18 17 37 37 H 0.96997 * 120.00058 * 0.02562 * 21 20 19 38 38 H 0.96994 * 119.99499 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6513 -2.1367 1.1903 6 6 1.8245 -2.7851 2.4970 7 6 0.8566 -2.1883 3.4861 8 1 0.1802 -1.4060 3.1750 9 6 0.8346 -2.6411 4.7882 10 7 -0.0103 -2.1207 5.6511 11 14 2.0041 -3.9947 5.3263 12 1 3.2674 -3.3901 5.8199 13 1 1.3767 -4.7877 6.4138 14 1 2.2979 -4.8826 4.1727 15 6 2.3656 -2.8105 0.1994 16 6 3.7555 -2.8809 0.2430 17 6 4.4261 -3.5575 -0.7561 18 7 3.7694 -4.1343 -1.7445 19 6 2.4524 -4.0930 -1.8261 20 6 1.7043 -3.4298 -0.8678 21 7 0.3076 -3.3839 -0.9621 22 1 -0.3632 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8934 -0.5138 -0.8900 26 1 3.1301 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6768 1.9562 0.8900 29 1 1.6055 -0.2618 2.1370 30 1 3.1264 -0.6445 1.2951 31 1 1.6330 -3.8538 2.4006 32 1 2.8447 -2.6290 2.8477 33 1 -0.0261 -2.4395 6.5671 34 1 4.3018 -2.4123 1.0482 35 1 5.5042 -3.6154 -0.7284 36 1 1.9532 -4.5780 -2.6520 37 1 -0.1431 -3.8190 -1.7027 38 1 -0.2090 -2.9170 -0.2869 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043416262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:17 Heat of formation + Delta-G solvation = 13.462951 kcal Electronic energy + Delta-G solvation = -18898.555761 eV Core-core repulsion = 16160.722301 eV Total energy + Delta-G solvation = -2737.833461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.44967 -38.76984 -35.78294 -35.66198 -34.56041 -31.85350 -30.01711 -29.09126 -27.92345 -26.61421 -24.53772 -23.45671 -22.19535 -20.87962 -19.08776 -18.25135 -17.82393 -17.25935 -16.84642 -16.28576 -15.69405 -15.35162 -15.24176 -14.82627 -14.76831 -14.65826 -14.38343 -13.96893 -13.41519 -13.17696 -13.02027 -12.87404 -12.66242 -12.53711 -12.08102 -11.92071 -11.79664 -11.68648 -11.47102 -11.35522 -10.81334 -10.45812 -10.21048 -9.25971 -8.43436 -8.29847 -6.32258 0.30143 0.57599 1.30517 1.33496 1.42636 2.30960 2.94696 3.00016 3.03987 3.09033 3.80073 3.92731 4.06418 4.12415 4.22583 4.24944 4.50597 4.61781 4.70530 4.78721 4.81363 4.84868 4.89386 4.94300 5.02899 5.08058 5.13191 5.25616 5.35711 5.46888 5.54066 5.56685 5.73404 5.98280 6.27716 6.49664 6.73999 6.80133 7.08788 7.19528 7.30881 8.85639 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017210 B = 0.008851 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.568935 B = 3162.877327 C = 3975.656839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 C -0.141 4.141 4 C 0.072 3.928 5 N -0.486 5.486 6 C 0.184 3.816 7 C -0.507 4.507 8 H 0.050 0.950 9 C 0.016 3.984 10 N -0.941 5.941 11 Si 0.935 3.065 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.258 1.258 15 C 0.044 3.956 16 C -0.166 4.166 17 C 0.034 3.966 18 N -0.468 5.468 19 C 0.019 3.981 20 C 0.186 3.814 21 N -0.849 5.849 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.037 0.963 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.018 0.982 32 H -0.013 1.013 33 H 0.266 0.734 34 H 0.126 0.874 35 H 0.169 0.831 36 H 0.177 0.823 37 H 0.409 0.591 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.661 0.301 -14.496 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.099 4.099 3 C -0.199 4.199 4 C -0.054 4.054 5 N -0.206 5.206 6 C 0.058 3.942 7 C -0.546 4.546 8 H 0.068 0.932 9 C -0.182 4.182 10 N -0.582 5.582 11 Si 0.760 3.240 12 H -0.193 1.193 13 H -0.207 1.207 14 H -0.183 1.183 15 C -0.063 4.063 16 C -0.188 4.188 17 C -0.125 4.125 18 N -0.177 5.177 19 C -0.144 4.144 20 C 0.075 3.925 21 N -0.389 5.389 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.005 0.995 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.186 0.814 36 H 0.194 0.806 37 H 0.239 0.761 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.561 -0.162 -15.055 15.732 hybrid contribution 0.236 0.019 1.903 1.918 sum 4.797 -0.144 -13.152 14.000 Atomic orbital electron populations 1.21659 0.94664 1.01724 1.00616 1.20980 0.96649 0.95931 0.96301 1.21771 1.00882 0.94994 1.02212 1.22184 0.97067 0.87085 0.99092 1.59268 1.54782 1.02147 1.04440 1.19901 0.94189 0.94143 0.86008 1.21146 1.19161 1.20568 0.93706 0.93185 1.25660 0.97055 0.98745 0.96709 1.70012 1.38670 1.44563 1.04945 0.85898 0.79522 0.80088 0.78535 1.19287 1.20724 1.18264 1.19021 0.90892 1.01349 0.95013 1.22591 0.94985 1.00702 1.00539 1.22502 1.00841 0.97988 0.91167 1.67508 1.09401 1.17052 1.23701 1.22499 0.89447 1.02631 0.99867 1.18897 0.86542 0.93905 0.93120 1.42463 1.02266 1.62237 1.31981 0.91960 0.92693 0.94407 0.92299 0.92621 0.91118 0.93027 0.91868 0.95404 0.96391 0.99527 0.92450 0.85656 0.81367 0.80569 0.76070 0.76340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.08 71.98 0.65 -3.15 16 2 C -0.08 -2.36 2.90 -10.79 -0.03 -2.39 16 3 C -0.14 -3.51 9.19 71.98 0.66 -2.85 16 4 C 0.07 2.65 4.10 86.30 0.35 3.00 16 5 N -0.49 -18.88 3.20 -698.36 -2.23 -21.11 16 6 C 0.18 8.59 3.45 85.56 0.29 8.88 16 7 C -0.51 -28.01 8.87 25.60 0.23 -27.79 16 8 H 0.05 3.04 7.47 -2.91 -0.02 3.01 16 9 C 0.02 0.93 5.47 84.66 0.46 1.39 16 10 N -0.94 -57.22 13.96 21.45 0.30 -56.92 16 11 Si 0.93 43.79 27.47 68.60 1.88 45.67 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.26 -11.65 6.54 99.48 0.65 -11.00 16 15 C 0.04 1.53 3.70 38.59 0.14 1.67 16 16 C -0.17 -5.33 8.67 22.46 0.19 -5.14 16 17 C 0.03 0.99 11.17 84.63 0.95 1.93 16 18 N -0.47 -13.85 10.36 -195.60 -2.03 -15.88 16 19 C 0.02 0.51 11.05 84.72 0.94 1.44 16 20 C 0.19 5.53 6.81 38.31 0.26 5.80 16 21 N -0.85 -21.35 9.11 -50.71 -0.46 -21.81 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.70 5.93 -2.39 -0.01 1.69 16 24 H 0.04 1.21 8.14 -2.38 -0.02 1.20 16 25 H 0.06 1.77 7.39 -2.39 -0.02 1.76 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 2.71 6.60 -2.39 -0.02 2.69 16 30 H 0.03 0.99 6.90 -2.39 -0.02 0.97 16 31 H 0.02 0.88 7.12 -2.39 -0.02 0.86 16 32 H -0.01 -0.61 7.19 -2.39 -0.02 -0.62 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.13 3.97 7.28 -2.91 -0.02 3.95 16 35 H 0.17 3.87 8.06 -2.91 -0.02 3.84 16 36 H 0.18 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.41 7.29 8.86 -92.71 -0.82 6.47 16 38 H 0.41 11.70 6.40 -92.71 -0.59 11.11 16 Total: -1.00 -63.59 305.57 2.16 -61.43 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -0.41 Total: 25.82 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 5.10 Total: -17.20 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -4.42 Total: -115.72 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -63.59 2.16 -61.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043416262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.891 kcal (2) G-P(sol) polarization free energy of solvation -63.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds