Wall clock time and date at job start Mon Mar 30 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99975 * 2 1 4 4 C 1.53004 * 109.46884 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46955 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47344 * 179.97438 * 5 4 3 7 7 C 1.46894 * 111.00232 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47292 * 35.00286 * 7 6 5 9 9 C 1.50700 * 109.47250 * 274.99844 * 7 6 5 10 10 H 1.08000 * 119.99740 * 324.77304 * 9 7 6 11 11 C 1.37875 * 120.00110 * 144.76274 * 9 7 6 12 12 N 1.31517 * 120.00088 * 5.11289 * 11 9 7 13 13 Si 1.86800 * 120.00146 * 185.11369 * 11 9 7 14 14 H 1.48497 * 109.47066 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47137 * 120.00300 * 13 11 9 16 16 H 1.48500 * 109.47151 * 240.00078 * 13 11 9 17 17 C 1.50702 * 109.47461 * 155.00081 * 7 6 5 18 18 C 1.38242 * 119.99885 * 45.39587 * 17 7 6 19 19 C 1.38231 * 120.00121 * 179.81225 * 18 17 7 20 20 C 1.38237 * 119.99943 * 0.39604 * 19 18 17 21 21 C 1.38235 * 119.99616 * 359.85943 * 20 19 18 22 22 C 1.38224 * 120.00370 * 225.67106 * 17 7 6 23 23 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46946 * 299.99554 * 1 2 3 25 25 H 1.08994 * 109.47111 * 60.00084 * 1 2 3 26 26 H 1.08994 * 109.46911 * 60.00578 * 3 2 1 27 27 H 1.08992 * 109.47098 * 299.99748 * 3 2 1 28 28 H 1.08997 * 109.47112 * 59.99797 * 4 3 2 29 29 H 1.09004 * 109.47060 * 300.00225 * 4 3 2 30 30 H 1.08999 * 109.47502 * 300.00496 * 5 4 3 31 31 H 1.09003 * 109.46685 * 59.99951 * 5 4 3 32 32 H 1.00907 * 111.00203 * 303.95493 * 6 5 4 33 33 H 0.96997 * 120.00402 * 179.97438 * 12 11 9 34 34 H 1.08006 * 119.99482 * 359.97438 * 18 17 7 35 35 H 1.08001 * 119.99683 * 180.23142 * 19 18 17 36 36 H 1.07997 * 119.99841 * 179.83053 * 20 19 18 37 37 H 1.08002 * 119.99468 * 179.97438 * 21 20 19 38 38 H 1.08007 * 120.00391 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6222 2.4664 -0.0013 7 6 6.2553 3.7919 -0.0013 8 1 5.6523 4.4826 0.5882 9 6 6.3601 4.2986 -1.4167 10 1 6.5521 3.6080 -2.2246 11 6 6.2105 5.6436 -1.6803 12 7 6.0770 6.4972 -0.6887 13 14 6.1977 6.2536 -3.4458 14 1 6.3634 5.1020 -4.3686 15 1 4.9059 6.9302 -3.7264 16 1 7.3129 7.2135 -3.6461 17 6 7.6338 3.6903 0.5991 18 6 8.4787 2.6638 0.2204 19 6 9.7445 2.5728 0.7683 20 6 10.1626 3.5036 1.7009 21 6 9.3157 4.5270 2.0835 22 6 8.0513 4.6202 1.5327 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 3.8567 0.6438 -0.8908 29 1 3.8575 0.6435 0.8891 30 1 3.8358 3.1231 -0.8912 31 1 3.8365 3.1234 0.8887 32 1 5.9412 1.9137 0.7803 33 1 5.9721 7.4435 -0.8741 34 1 8.1506 1.9344 -0.5054 35 1 10.4059 1.7729 0.4696 36 1 11.1506 3.4309 2.1310 37 1 9.6422 5.2539 2.8125 38 1 7.3898 5.4199 1.8317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055016291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:23 Heat of formation + Delta-G solvation = -31.462844 kcal Electronic energy + Delta-G solvation = -17762.934830 eV Core-core repulsion = 14990.860490 eV Total energy + Delta-G solvation = -2772.074340 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.44865 -37.87521 -35.71142 -33.11066 -31.53106 -29.98835 -29.55392 -26.91564 -26.01369 -23.98539 -22.33915 -21.61736 -20.74038 -19.84433 -16.61972 -16.25390 -16.03278 -15.83207 -15.07129 -14.64117 -14.59187 -14.16515 -13.97817 -13.39084 -13.01442 -12.64208 -12.37437 -12.15029 -11.85959 -11.63549 -11.49222 -11.22944 -10.98436 -10.83390 -10.67737 -10.46091 -10.19392 -10.09122 -9.66141 -9.59191 -9.53093 -8.55784 -8.02794 -7.68555 -7.31367 -6.08297 -4.11262 2.30727 2.32819 3.26624 3.35022 3.40597 3.81587 4.37603 4.72500 5.12802 5.21278 5.23204 5.32835 5.36063 5.54863 5.57555 5.66556 5.67962 5.78397 5.88101 5.91154 6.05437 6.24730 6.28449 6.45935 6.54537 6.63200 6.75413 6.90190 6.98347 7.22704 7.24599 7.33479 7.39711 7.71319 7.83784 7.91780 8.14715 8.17963 8.67898 9.01507 9.52378 10.96954 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.006421 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.153610 B = 4359.498180 C = 5759.713980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.062 3.938 4 C -0.115 4.115 5 C 0.076 3.924 6 N -0.684 5.684 7 C 0.235 3.765 8 H 0.041 0.959 9 C -0.484 4.484 10 H 0.064 0.936 11 C 0.061 3.939 12 N -0.889 5.889 13 Si 0.894 3.106 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.036 4.036 18 C -0.111 4.111 19 C -0.134 4.134 20 C -0.152 4.152 21 C -0.131 4.131 22 C -0.110 4.110 23 H 0.082 0.918 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.016 0.984 32 H 0.314 0.686 33 H 0.261 0.739 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.919 -7.334 3.956 9.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.014 4.014 4 C -0.153 4.153 5 C -0.054 4.054 6 N -0.314 5.314 7 C 0.128 3.872 8 H 0.059 0.941 9 C -0.523 4.523 10 H 0.083 0.917 11 C -0.142 4.142 12 N -0.527 5.527 13 Si 0.722 3.278 14 H -0.195 1.195 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.037 4.037 18 C -0.129 4.129 19 C -0.152 4.152 20 C -0.171 4.171 21 C -0.150 4.150 22 C -0.129 4.129 23 H 0.100 0.900 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.034 0.966 32 H 0.130 0.870 33 H 0.071 0.929 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.803 -7.361 3.294 8.916 hybrid contribution -0.270 1.186 -0.069 1.218 sum -4.073 -6.176 3.225 8.070 Atomic orbital electron populations 1.22696 0.81597 1.02315 0.99857 1.87866 1.19262 1.28804 1.95428 1.22562 0.94829 0.83935 1.00121 1.21523 0.91690 0.98863 1.03175 1.21631 0.89372 0.93873 1.00546 1.60745 1.04307 1.18602 1.47742 1.18411 0.87021 0.85204 0.96581 0.94149 1.21050 1.47520 0.91991 0.91729 0.91740 1.25032 0.94823 0.97009 0.97312 1.69933 1.49388 1.02591 1.30782 0.86488 0.77507 0.78842 0.84935 1.19522 1.21029 1.21076 1.20670 0.99233 0.92361 0.91484 1.21000 0.93225 0.99030 0.99646 1.20996 0.96568 0.99217 0.98463 1.20827 0.99058 0.96924 1.00263 1.20985 0.94827 0.98324 1.00826 1.21097 0.95967 0.98981 0.96844 0.89976 0.94314 0.94200 0.93589 0.93124 0.90549 0.91991 0.90472 0.96586 0.86950 0.92896 0.86201 0.87574 0.87770 0.87609 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.62 10.70 -35.23 -0.38 -6.00 16 3 C 0.06 0.88 5.94 37.16 0.22 1.10 16 4 C -0.11 -1.79 5.84 -26.73 -0.16 -1.94 16 5 C 0.08 1.41 5.48 -3.83 -0.02 1.39 16 6 N -0.68 -14.08 5.83 -109.19 -0.64 -14.71 16 7 C 0.23 5.62 2.29 -70.02 -0.16 5.45 16 8 H 0.04 1.08 6.83 -51.93 -0.35 0.72 16 9 C -0.48 -12.90 8.31 -34.44 -0.29 -13.19 16 10 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 11 C 0.06 1.64 5.45 -17.82 -0.10 1.55 16 12 N -0.89 -24.68 12.84 55.43 0.71 -23.96 16 13 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C -0.04 -0.82 4.65 -104.62 -0.49 -1.30 16 18 C -0.11 -2.28 9.08 -39.58 -0.36 -2.63 16 19 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 20 C -0.15 -2.70 10.05 -39.58 -0.40 -3.10 16 21 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 22 C -0.11 -2.40 9.67 -39.59 -0.38 -2.78 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.58 8.00 -51.93 -0.42 1.17 16 31 H 0.02 0.30 8.05 -51.93 -0.42 -0.12 16 32 H 0.31 5.97 8.13 -39.29 -0.32 5.66 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.12 2.43 7.89 -52.48 -0.41 2.02 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.12 2.68 8.00 -52.48 -0.42 2.26 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -28.36 322.28 -8.39 -36.75 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.11 Total: 6.68 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -1.81 Total: -19.76 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.08 Total: -38.68 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.38 Total: -6.00 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.36 -8.39 -36.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.290 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds