Wall clock time and date at job start Mon Mar 30 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99975 * 2 1 4 4 C 1.53004 * 109.46884 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46955 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47344 * 179.97438 * 5 4 3 7 7 C 1.46894 * 111.00232 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47292 * 35.00286 * 7 6 5 9 9 C 1.50700 * 109.47250 * 274.99844 * 7 6 5 10 10 H 1.08000 * 119.99740 * 324.77304 * 9 7 6 11 11 C 1.37875 * 120.00110 * 144.76274 * 9 7 6 12 12 N 1.31517 * 120.00088 * 5.11289 * 11 9 7 13 13 Si 1.86800 * 120.00146 * 185.11369 * 11 9 7 14 14 H 1.48497 * 109.47066 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47137 * 120.00300 * 13 11 9 16 16 H 1.48500 * 109.47151 * 240.00078 * 13 11 9 17 17 C 1.50702 * 109.47461 * 155.00081 * 7 6 5 18 18 C 1.38242 * 119.99885 * 45.39587 * 17 7 6 19 19 C 1.38231 * 120.00121 * 179.81225 * 18 17 7 20 20 C 1.38237 * 119.99943 * 0.39604 * 19 18 17 21 21 C 1.38235 * 119.99616 * 359.85943 * 20 19 18 22 22 C 1.38224 * 120.00370 * 225.67106 * 17 7 6 23 23 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46946 * 299.99554 * 1 2 3 25 25 H 1.08994 * 109.47111 * 60.00084 * 1 2 3 26 26 H 1.08994 * 109.46911 * 60.00578 * 3 2 1 27 27 H 1.08992 * 109.47098 * 299.99748 * 3 2 1 28 28 H 1.08997 * 109.47112 * 59.99797 * 4 3 2 29 29 H 1.09004 * 109.47060 * 300.00225 * 4 3 2 30 30 H 1.08999 * 109.47502 * 300.00496 * 5 4 3 31 31 H 1.09003 * 109.46685 * 59.99951 * 5 4 3 32 32 H 1.00907 * 111.00203 * 303.95493 * 6 5 4 33 33 H 0.96997 * 120.00402 * 179.97438 * 12 11 9 34 34 H 1.08006 * 119.99482 * 359.97438 * 18 17 7 35 35 H 1.08001 * 119.99683 * 180.23142 * 19 18 17 36 36 H 1.07997 * 119.99841 * 179.83053 * 20 19 18 37 37 H 1.08002 * 119.99468 * 179.97438 * 21 20 19 38 38 H 1.08007 * 120.00391 * 359.97438 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6222 2.4664 -0.0013 7 6 6.2553 3.7919 -0.0013 8 1 5.6523 4.4826 0.5882 9 6 6.3601 4.2986 -1.4167 10 1 6.5521 3.6080 -2.2246 11 6 6.2105 5.6436 -1.6803 12 7 6.0770 6.4972 -0.6887 13 14 6.1977 6.2536 -3.4458 14 1 6.3634 5.1020 -4.3686 15 1 4.9059 6.9302 -3.7264 16 1 7.3129 7.2135 -3.6461 17 6 7.6338 3.6903 0.5991 18 6 8.4787 2.6638 0.2204 19 6 9.7445 2.5728 0.7683 20 6 10.1626 3.5036 1.7009 21 6 9.3157 4.5270 2.0835 22 6 8.0513 4.6202 1.5327 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 3.8567 0.6438 -0.8908 29 1 3.8575 0.6435 0.8891 30 1 3.8358 3.1231 -0.8912 31 1 3.8365 3.1234 0.8887 32 1 5.9412 1.9137 0.7803 33 1 5.9721 7.4435 -0.8741 34 1 8.1506 1.9344 -0.5054 35 1 10.4059 1.7729 0.4696 36 1 11.1506 3.4309 2.1310 37 1 9.6422 5.2539 2.8125 38 1 7.3898 5.4199 1.8317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055016291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:23 Heat of formation + Delta-G solvation = -48.585067 kcal Electronic energy + Delta-G solvation = -17763.677305 eV Core-core repulsion = 14990.860490 eV Total energy + Delta-G solvation = -2772.816816 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03606 -38.96748 -37.30776 -34.86647 -33.23552 -31.52990 -31.00679 -28.39009 -27.40594 -25.47601 -23.92551 -23.12339 -22.20933 -21.52728 -18.51159 -17.58876 -17.22118 -17.18009 -16.72417 -16.12478 -15.99524 -15.75811 -15.40643 -14.77013 -14.74290 -14.20233 -13.88598 -13.75336 -13.36236 -13.08864 -12.90882 -12.79396 -12.57910 -12.39398 -12.06228 -11.95455 -11.80509 -11.71867 -11.48562 -11.38180 -10.61971 -10.57872 -9.57218 -9.30599 -9.07883 -8.11347 -6.21905 0.74992 0.78044 1.37420 1.39987 1.51607 2.40405 2.75122 3.07612 3.26746 3.74476 4.02765 4.24255 4.29206 4.32675 4.34050 4.46535 4.48906 4.54697 4.57695 4.63561 4.69500 4.82929 4.85360 4.92207 4.98223 5.16069 5.27958 5.29789 5.40886 5.47204 5.72405 5.80909 5.83352 6.08118 6.17307 6.22040 6.36576 6.46564 6.91505 7.00017 7.44799 8.91746 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.006421 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.153610 B = 4359.498180 C = 5759.713980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.067 3.933 4 C -0.101 4.101 5 C 0.081 3.919 6 N -0.682 5.682 7 C 0.243 3.757 8 H 0.003 0.997 9 C -0.495 4.495 10 H 0.050 0.950 11 C 0.015 3.985 12 N -0.916 5.916 13 Si 0.951 3.049 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.283 1.283 17 C -0.062 4.062 18 C -0.121 4.121 19 C -0.128 4.128 20 C -0.142 4.142 21 C -0.131 4.131 22 C -0.134 4.134 23 H 0.101 0.899 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.013 0.987 32 H 0.325 0.675 33 H 0.261 0.739 34 H 0.117 0.883 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 -8.527 4.175 9.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.335 6.335 3 C -0.010 4.010 4 C -0.139 4.139 5 C -0.049 4.049 6 N -0.313 5.313 7 C 0.135 3.865 8 H 0.021 0.979 9 C -0.534 4.534 10 H 0.069 0.931 11 C -0.184 4.184 12 N -0.556 5.556 13 Si 0.777 3.223 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.209 1.209 17 C -0.063 4.063 18 C -0.140 4.140 19 C -0.146 4.146 20 C -0.160 4.160 21 C -0.149 4.149 22 C -0.153 4.153 23 H 0.119 0.881 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.142 0.858 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.150 0.850 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.717 -8.574 3.516 9.657 hybrid contribution -0.592 1.482 -0.065 1.597 sum -3.309 -7.092 3.451 8.553 Atomic orbital electron populations 1.22942 0.79509 1.03930 1.00782 1.87818 1.21551 1.28494 1.95600 1.22437 0.93558 0.84350 1.00673 1.21330 0.92977 0.96405 1.03180 1.21568 0.88458 0.95716 0.99183 1.60635 1.05344 1.17085 1.48220 1.18122 0.87940 0.85611 0.94784 0.97896 1.21211 1.47379 0.92016 0.92748 0.93128 1.25695 0.94857 0.97236 1.00638 1.70050 1.50588 1.02630 1.32287 0.85611 0.77562 0.78215 0.80923 1.19295 1.20442 1.20916 1.20564 0.98717 0.94010 0.93011 1.21041 0.94308 0.98537 1.00105 1.21392 0.95721 0.99965 0.97485 1.21297 1.00313 0.95358 0.99065 1.21292 0.93608 0.99295 1.00730 1.21059 0.97375 0.98730 0.98136 0.88099 0.93211 0.93446 0.92662 0.93018 0.91258 0.91140 0.92846 0.96904 0.85806 0.93000 0.86526 0.84011 0.83628 0.85004 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.71 16 2 O -0.42 -11.31 10.70 -148.98 -1.59 -12.90 16 3 C 0.07 1.84 5.94 71.98 0.43 2.27 16 4 C -0.10 -3.15 5.84 30.60 0.18 -2.97 16 5 C 0.08 3.10 5.48 86.30 0.47 3.58 16 6 N -0.68 -28.97 5.83 -499.38 -2.91 -31.88 16 7 C 0.24 12.14 2.29 43.42 0.10 12.24 16 8 H 0.00 0.18 6.83 -2.39 -0.02 0.16 16 9 C -0.49 -27.26 8.31 25.60 0.21 -27.05 16 10 H 0.05 2.86 7.82 -2.91 -0.02 2.84 16 11 C 0.02 0.85 5.45 84.65 0.46 1.31 16 12 N -0.92 -52.71 12.84 21.45 0.28 -52.43 16 13 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 17 C -0.06 -2.84 4.65 -19.87 -0.09 -2.93 16 18 C -0.12 -4.90 9.08 22.27 0.20 -4.70 16 19 C -0.13 -4.26 10.05 22.27 0.22 -4.03 16 20 C -0.14 -4.51 10.05 22.27 0.22 -4.28 16 21 C -0.13 -4.73 10.05 22.27 0.22 -4.51 16 22 C -0.13 -5.95 9.67 22.27 0.22 -5.73 16 23 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.05 2.30 8.00 -2.39 -0.02 2.28 16 31 H 0.01 0.50 8.05 -2.39 -0.02 0.48 16 32 H 0.32 12.58 8.13 -89.69 -0.73 11.85 16 33 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.12 4.69 7.89 -2.91 -0.02 4.67 16 35 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 36 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 37 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 38 H 0.09 4.51 8.00 -2.91 -0.02 4.49 16 Total: -1.00 -62.49 322.28 2.19 -60.31 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.29 Total: 25.75 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 4.10 Total: -35.11 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -2.63 Total: -84.31 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -1.59 Total: -12.90 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -62.49 2.19 -60.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055016291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.721 kcal (2) G-P(sol) polarization free energy of solvation -62.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds