Wall clock time and date at job start Mon Mar 30 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46900 * 2 1 4 4 C 1.50697 * 109.47099 * 180.02562 * 3 2 1 5 5 C 1.38113 * 120.40212 * 124.99973 * 4 3 2 6 6 C 1.39627 * 118.33169 * 179.97438 * 5 4 3 7 7 N 1.38543 * 120.52549 * 179.97438 * 6 5 4 8 8 C 1.46509 * 119.99606 * 191.48823 * 7 6 5 9 9 C 1.46497 * 120.00530 * 11.48950 * 7 6 5 10 10 H 1.08997 * 109.47105 * 3.03781 * 9 7 6 11 11 C 1.53002 * 109.47261 * 123.03984 * 9 7 6 12 12 C 1.50699 * 109.47125 * 243.03862 * 9 7 6 13 13 H 1.08000 * 120.00167 * 0.02562 * 12 9 7 14 14 C 1.37876 * 120.00233 * 179.97438 * 12 9 7 15 15 N 1.31518 * 120.00001 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 120.00279 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.46986 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.46914 * 120.00325 * 16 14 12 19 19 H 1.48504 * 109.46880 * 240.00233 * 16 14 12 20 20 N 1.32992 * 118.94118 * 0.02562 * 6 5 4 21 21 C 1.31745 * 120.68222 * 359.97438 * 20 6 5 22 22 N 1.31788 * 121.83433 * 359.71738 * 21 20 6 23 23 H 1.08998 * 109.47308 * 299.99806 * 1 2 3 24 24 H 1.08996 * 109.47173 * 60.00242 * 1 2 3 25 25 H 1.09001 * 109.47224 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47173 * 119.99758 * 2 1 3 27 27 H 1.09000 * 109.47085 * 240.00685 * 2 1 3 28 28 H 1.08995 * 109.47304 * 300.00314 * 3 2 1 29 29 H 1.08998 * 109.46981 * 59.99994 * 3 2 1 30 30 H 1.07995 * 120.83320 * 0.02562 * 5 4 3 31 31 H 1.08997 * 109.46874 * 89.99931 * 8 7 6 32 32 H 1.08997 * 109.47053 * 210.00163 * 8 7 6 33 33 H 1.09002 * 109.47259 * 330.00109 * 8 7 6 34 34 H 1.09002 * 109.46860 * 60.00121 * 11 9 7 35 35 H 1.09003 * 109.46911 * 180.02562 * 11 9 7 36 36 H 1.08994 * 109.46894 * 299.99758 * 11 9 7 37 37 H 0.96991 * 120.00115 * 179.97438 * 15 14 12 38 38 H 1.07999 * 119.08110 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2455 2.1260 -0.9766 6 6 5.6408 2.0976 -0.9356 7 7 6.3868 2.7668 -1.8922 8 6 7.8290 2.5300 -1.9941 9 6 5.7335 3.7113 -2.8018 10 1 4.6784 3.7955 -2.5418 11 6 6.4004 5.0828 -2.6782 12 6 5.8635 3.2155 -4.2190 13 1 6.3807 2.2893 -4.4218 14 6 5.3214 3.9438 -5.2566 15 7 4.6912 5.0714 -5.0097 16 14 5.4820 3.3288 -7.0133 17 1 6.2291 2.0455 -7.0221 18 1 4.1297 3.1178 -7.5893 19 1 6.2143 4.3342 -7.8246 20 7 6.2424 1.4170 0.0358 21 6 5.5359 0.7791 0.9467 22 7 4.2181 0.7917 0.9389 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.7254 2.6695 -1.7516 31 1 8.0143 1.7091 -2.6869 32 1 8.3203 3.4317 -2.3594 33 1 8.2253 2.2728 -1.0118 34 1 7.4555 4.9985 -2.9383 35 1 5.9140 5.7856 -3.3547 36 1 6.3063 5.4413 -1.6532 37 1 4.3102 5.5839 -5.7397 38 1 6.0512 0.2349 1.7244 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:11 Heat of formation + Delta-G solvation = 38.415404 kcal Electronic energy + Delta-G solvation = -18270.372549 eV Core-core repulsion = 15533.621108 eV Total energy + Delta-G solvation = -2736.751441 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33418 -36.95149 -35.23152 -33.25057 -31.97903 -30.92861 -29.17072 -27.48018 -25.53689 -25.22835 -23.64614 -22.10032 -21.05075 -19.58086 -17.04772 -16.66253 -16.36300 -15.00322 -14.89606 -14.68477 -14.39513 -14.08072 -13.71365 -13.44101 -13.06673 -12.75365 -12.67496 -12.03642 -11.65953 -11.47928 -11.23748 -11.19559 -11.14134 -10.93278 -10.76639 -10.62385 -10.44786 -10.29299 -10.18987 -9.80106 -9.30569 -8.97984 -8.57796 -8.55478 -7.00144 -6.20416 -4.30080 1.68439 2.03586 3.18314 3.27099 3.31005 3.74788 4.29397 4.47725 4.62246 4.84614 5.09153 5.13862 5.19645 5.30508 5.54605 5.69451 5.80700 5.91832 5.96294 5.99741 6.11017 6.15698 6.21064 6.25433 6.40668 6.43586 6.48225 6.62743 6.73718 6.86514 6.97871 7.24483 7.38978 7.58218 7.81120 7.99178 8.18001 8.32717 8.73867 8.93618 9.37908 10.83124 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018778 B = 0.006712 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.785999 B = 4170.500639 C = 5108.389637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.067 4.067 4 C 0.190 3.810 5 C -0.284 4.284 6 C 0.442 3.558 7 N -0.571 5.571 8 C 0.102 3.898 9 C 0.264 3.736 10 H 0.054 0.946 11 C -0.150 4.150 12 C -0.527 4.527 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.899 3.101 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.282 1.282 20 N -0.596 5.596 21 C 0.328 3.672 22 N -0.581 5.581 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.146 0.854 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.097 0.903 36 H 0.013 0.987 37 H 0.264 0.736 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 -5.269 7.748 9.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.105 4.105 4 C 0.050 3.950 5 C -0.312 4.312 6 C 0.198 3.802 7 N -0.279 5.279 8 C -0.042 4.042 9 C 0.164 3.836 10 H 0.071 0.929 11 C -0.208 4.208 12 C -0.565 4.565 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.527 5.527 16 Si 0.727 3.273 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.208 1.208 20 N -0.323 5.323 21 C 0.037 3.963 22 N -0.302 5.302 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.163 0.837 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.115 0.885 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.320 -5.438 8.126 10.049 hybrid contribution -0.175 0.236 -1.728 1.753 sum -2.495 -5.202 6.398 8.615 Atomic orbital electron populations 1.21786 0.95939 1.01415 1.01733 1.21392 0.95145 0.95848 1.02756 1.20540 0.88638 0.98206 1.03084 1.21155 0.96285 0.89129 0.88465 1.22186 0.94120 1.09822 1.05070 1.18690 0.88478 0.86761 0.86277 1.47193 1.07341 1.42045 1.31293 1.21424 0.80921 1.00844 1.00969 1.19088 0.93024 0.84277 0.87222 0.92885 1.22135 1.00034 1.00040 0.98620 1.21384 1.36757 1.07871 0.90530 0.92019 1.24890 0.94682 0.94731 0.99340 1.69864 1.36392 1.14122 1.32355 0.86415 0.77974 0.78911 0.84026 1.19752 1.20814 1.20803 1.67935 1.41605 1.16531 1.06236 1.24358 0.86813 0.91499 0.93619 1.68077 1.09814 1.24998 1.27361 0.92788 0.92723 0.92902 0.90928 0.92251 0.90207 0.90148 0.83677 0.93927 0.91510 0.91619 0.94643 0.88492 0.96810 0.92558 0.80063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.11 -1.44 5.81 -26.73 -0.16 -1.59 16 3 C -0.07 -0.94 5.64 -27.88 -0.16 -1.09 16 4 C 0.19 3.33 6.19 -82.33 -0.51 2.82 16 5 C -0.28 -5.66 8.94 -39.11 -0.35 -6.01 16 6 C 0.44 9.29 7.35 -154.77 -1.14 8.16 16 7 N -0.57 -12.39 2.86 -175.23 -0.50 -12.89 16 8 C 0.10 1.95 9.95 59.85 0.60 2.55 16 9 C 0.26 6.30 2.53 -69.08 -0.17 6.13 16 10 H 0.05 1.34 5.54 -51.93 -0.29 1.06 16 11 C -0.15 -3.43 8.89 37.16 0.33 -3.10 16 12 C -0.53 -13.63 8.41 -34.44 -0.29 -13.92 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 14 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 15 N -0.89 -23.64 11.32 55.43 0.63 -23.01 16 16 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 N -0.60 -11.56 9.23 -13.81 -0.13 -11.68 16 21 C 0.33 5.57 12.28 -92.20 -1.13 4.44 16 22 N -0.58 -10.12 10.04 -10.88 -0.11 -10.23 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.95 7.99 -51.93 -0.41 0.54 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.15 3.00 6.02 -52.49 -0.32 2.69 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.24 6.27 -51.93 -0.33 0.91 16 33 H 0.07 1.17 7.27 -51.93 -0.38 0.79 16 34 H 0.03 0.77 6.57 -51.93 -0.34 0.43 16 35 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.18 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 310.27 15.07 4.68 4.68 Total: -1.00 -27.58 310.27 -8.87 -36.46 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.71 Total: 2.50 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.71 Total: -1.18 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.11 Total: -57.81 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.58 -8.87 -36.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.871 kcal (2) G-P(sol) polarization free energy of solvation -27.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds