Wall clock time and date at job start Mon Mar 30 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46900 * 2 1 4 4 C 1.50697 * 109.47099 * 180.02562 * 3 2 1 5 5 C 1.38113 * 120.40212 * 124.99973 * 4 3 2 6 6 C 1.39627 * 118.33169 * 179.97438 * 5 4 3 7 7 N 1.38543 * 120.52549 * 179.97438 * 6 5 4 8 8 C 1.46509 * 119.99606 * 191.48823 * 7 6 5 9 9 C 1.46497 * 120.00530 * 11.48950 * 7 6 5 10 10 H 1.08997 * 109.47105 * 3.03781 * 9 7 6 11 11 C 1.53002 * 109.47261 * 123.03984 * 9 7 6 12 12 C 1.50699 * 109.47125 * 243.03862 * 9 7 6 13 13 H 1.08000 * 120.00167 * 0.02562 * 12 9 7 14 14 C 1.37876 * 120.00233 * 179.97438 * 12 9 7 15 15 N 1.31518 * 120.00001 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 120.00279 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.46986 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.46914 * 120.00325 * 16 14 12 19 19 H 1.48504 * 109.46880 * 240.00233 * 16 14 12 20 20 N 1.32992 * 118.94118 * 0.02562 * 6 5 4 21 21 C 1.31745 * 120.68222 * 359.97438 * 20 6 5 22 22 N 1.31788 * 121.83433 * 359.71738 * 21 20 6 23 23 H 1.08998 * 109.47308 * 299.99806 * 1 2 3 24 24 H 1.08996 * 109.47173 * 60.00242 * 1 2 3 25 25 H 1.09001 * 109.47224 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47173 * 119.99758 * 2 1 3 27 27 H 1.09000 * 109.47085 * 240.00685 * 2 1 3 28 28 H 1.08995 * 109.47304 * 300.00314 * 3 2 1 29 29 H 1.08998 * 109.46981 * 59.99994 * 3 2 1 30 30 H 1.07995 * 120.83320 * 0.02562 * 5 4 3 31 31 H 1.08997 * 109.46874 * 89.99931 * 8 7 6 32 32 H 1.08997 * 109.47053 * 210.00163 * 8 7 6 33 33 H 1.09002 * 109.47259 * 330.00109 * 8 7 6 34 34 H 1.09002 * 109.46860 * 60.00121 * 11 9 7 35 35 H 1.09003 * 109.46911 * 180.02562 * 11 9 7 36 36 H 1.08994 * 109.46894 * 299.99758 * 11 9 7 37 37 H 0.96991 * 120.00115 * 179.97438 * 15 14 12 38 38 H 1.07999 * 119.08110 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2455 2.1260 -0.9766 6 6 5.6408 2.0976 -0.9356 7 7 6.3868 2.7668 -1.8922 8 6 7.8290 2.5300 -1.9941 9 6 5.7335 3.7113 -2.8018 10 1 4.6784 3.7955 -2.5418 11 6 6.4004 5.0828 -2.6782 12 6 5.8635 3.2155 -4.2190 13 1 6.3807 2.2893 -4.4218 14 6 5.3214 3.9438 -5.2566 15 7 4.6912 5.0714 -5.0097 16 14 5.4820 3.3288 -7.0133 17 1 6.2291 2.0455 -7.0221 18 1 4.1297 3.1178 -7.5893 19 1 6.2143 4.3342 -7.8246 20 7 6.2424 1.4170 0.0358 21 6 5.5359 0.7791 0.9467 22 7 4.2181 0.7917 0.9389 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.7254 2.6695 -1.7516 31 1 8.0143 1.7091 -2.6869 32 1 8.3203 3.4317 -2.3594 33 1 8.2253 2.2728 -1.0118 34 1 7.4555 4.9985 -2.9383 35 1 5.9140 5.7856 -3.3547 36 1 6.3063 5.4413 -1.6532 37 1 4.3102 5.5839 -5.7397 38 1 6.0512 0.2349 1.7244 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:11 Heat of formation + Delta-G solvation = 25.808451 kcal Electronic energy + Delta-G solvation = -18270.919228 eV Core-core repulsion = 15533.621108 eV Total energy + Delta-G solvation = -2737.298120 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79983 -38.59066 -36.46839 -35.03353 -33.39284 -32.43588 -30.93885 -28.73119 -27.36042 -26.81340 -25.14802 -23.43857 -22.38906 -21.15916 -18.68245 -18.30477 -18.06637 -16.71881 -16.29473 -16.08793 -15.82012 -15.61883 -15.08405 -14.87487 -14.50816 -14.40505 -13.89458 -13.51678 -13.10136 -13.05422 -12.97754 -12.73085 -12.57338 -12.35973 -12.28398 -12.17372 -12.12178 -11.74932 -11.61868 -11.33019 -11.07383 -10.55589 -10.52908 -10.01542 -8.65950 -8.15827 -6.34408 0.24804 0.52178 1.38260 1.41782 1.51580 2.13217 2.41809 3.03476 3.09302 3.33407 3.51129 3.81928 4.15552 4.20582 4.26284 4.44122 4.49341 4.63571 4.68945 4.72795 4.82855 4.86631 4.87178 4.92120 5.00107 5.01352 5.04217 5.22501 5.32138 5.36812 5.49817 5.57379 5.64259 5.74096 5.98525 6.11539 6.51923 6.64842 6.79080 7.35077 7.46946 8.84398 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018778 B = 0.006712 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.785999 B = 4170.500639 C = 5108.389637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.067 4.067 4 C 0.198 3.802 5 C -0.309 4.309 6 C 0.425 3.575 7 N -0.584 5.584 8 C 0.106 3.894 9 C 0.271 3.729 10 H 0.033 0.967 11 C -0.137 4.137 12 C -0.539 4.539 13 H 0.049 0.951 14 C 0.026 3.974 15 N -0.910 5.910 16 Si 0.957 3.043 17 H -0.275 1.275 18 H -0.279 1.279 19 H -0.276 1.276 20 N -0.604 5.604 21 C 0.328 3.672 22 N -0.579 5.579 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.023 0.977 37 H 0.267 0.733 38 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -6.216 8.546 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.105 4.105 4 C 0.057 3.943 5 C -0.338 4.338 6 C 0.182 3.818 7 N -0.293 5.293 8 C -0.036 4.036 9 C 0.169 3.831 10 H 0.050 0.950 11 C -0.196 4.196 12 C -0.578 4.578 13 H 0.068 0.932 14 C -0.174 4.174 15 N -0.549 5.549 16 Si 0.783 3.217 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.201 1.201 20 N -0.331 5.331 21 C 0.039 3.961 22 N -0.300 5.300 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.146 0.854 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.632 -6.400 8.948 11.312 hybrid contribution -0.110 0.473 -1.870 1.932 sum -2.743 -5.928 7.078 9.631 Atomic orbital electron populations 1.21750 0.93872 1.02412 1.02366 1.21341 0.96888 0.94390 1.01935 1.20669 0.86290 0.99534 1.03966 1.21660 0.97950 0.87410 0.87260 1.22188 0.94117 1.11417 1.06031 1.18908 0.88901 0.87269 0.86736 1.47075 1.08139 1.42448 1.31623 1.21452 0.79786 1.00797 1.01609 1.18800 0.92273 0.85180 0.86841 0.94973 1.21955 0.99945 0.99086 0.98611 1.21530 1.36815 1.07518 0.91898 0.93249 1.25546 0.94395 0.94885 1.02587 1.69957 1.36783 1.14807 1.33350 0.85526 0.77883 0.78321 0.80014 1.19928 1.20521 1.20108 1.67993 1.41939 1.16809 1.06344 1.25247 0.86932 0.90454 0.93496 1.68225 1.10102 1.24710 1.26993 0.91641 0.92625 0.91761 0.91170 0.93603 0.90096 0.88420 0.85359 0.94397 0.91223 0.90281 0.94033 0.90541 0.95827 0.92356 0.75950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.91 71.98 0.71 -1.98 16 2 C -0.11 -2.55 5.81 30.60 0.18 -2.37 16 3 C -0.07 -1.79 5.64 29.85 0.17 -1.62 16 4 C 0.20 6.81 6.19 42.42 0.26 7.08 16 5 C -0.31 -12.51 8.94 22.58 0.20 -12.31 16 6 C 0.43 17.90 7.35 133.16 0.98 18.88 16 7 N -0.58 -25.59 2.86 -708.30 -2.02 -27.61 16 8 C 0.11 4.05 9.95 127.77 1.27 5.32 16 9 C 0.27 13.18 2.53 44.25 0.11 13.30 16 10 H 0.03 1.70 5.54 -2.39 -0.01 1.69 16 11 C -0.14 -6.35 8.89 71.98 0.64 -5.71 16 12 C -0.54 -28.33 8.41 25.60 0.22 -28.11 16 13 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 14 C 0.03 1.38 5.30 84.65 0.45 1.83 16 15 N -0.91 -48.91 11.32 21.45 0.24 -48.67 16 16 Si 0.96 41.88 29.54 68.60 2.03 43.90 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 20 N -0.60 -22.70 9.23 -197.62 -1.82 -24.53 16 21 C 0.33 10.44 12.28 180.90 2.22 12.66 16 22 N -0.58 -19.11 10.04 -188.35 -1.89 -21.00 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.70 7.99 -2.39 -0.02 1.68 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 2.15 7.93 -2.39 -0.02 2.13 16 29 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.13 5.57 6.02 -2.91 -0.02 5.55 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 2.56 6.27 -2.39 -0.01 2.54 16 33 H 0.08 2.75 7.27 -2.39 -0.02 2.73 16 34 H 0.04 1.81 6.57 -2.39 -0.02 1.80 16 35 H 0.08 3.86 6.07 -2.39 -0.01 3.85 16 36 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 38 H 0.22 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -58.23 310.27 4.98 -53.26 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.04 Total: 17.71 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 7.41 Total: 6.95 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -5.50 Total: -121.81 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -58.23 4.98 -53.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.064 kcal (2) G-P(sol) polarization free energy of solvation -58.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds