Wall clock time and date at job start Mon Mar 30 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42896 * 109.47214 * 2 1 4 4 C 1.36017 * 117.00157 * 180.02562 * 3 2 1 5 5 C 1.38505 * 120.08232 * 89.99386 * 4 3 2 6 6 C 1.50702 * 119.98614 * 359.72925 * 5 4 3 7 7 C 1.38277 * 120.01938 * 179.70572 * 5 4 3 8 8 C 1.38262 * 120.18065 * 0.02562 * 7 5 4 9 9 C 1.50700 * 119.91787 * 179.97438 * 8 7 5 10 10 C 1.38216 * 120.15862 * 0.02592 * 8 7 5 11 11 C 1.38726 * 119.98302 * 359.92865 * 10 8 7 12 12 N 1.39968 * 120.09203 * 180.02562 * 11 10 8 13 13 C 1.46502 * 119.99877 * 0.02562 * 12 11 10 14 14 C 1.50701 * 109.47021 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99698 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99928 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00098 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46968 * 89.99500 * 18 16 14 20 20 H 1.48496 * 109.47028 * 209.99914 * 18 16 14 21 21 H 1.48505 * 109.46682 * 329.99757 * 18 16 14 22 22 H 1.09005 * 109.47311 * 300.00560 * 1 2 3 23 23 H 1.09005 * 109.47426 * 60.00131 * 1 2 3 24 24 H 1.09000 * 109.47705 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47197 * 239.99168 * 2 1 3 26 26 H 1.09005 * 109.46684 * 119.99843 * 2 1 3 27 27 H 1.08996 * 109.46957 * 90.00447 * 6 5 4 28 28 H 1.09011 * 109.46702 * 209.99958 * 6 5 4 29 29 H 1.08999 * 109.47405 * 329.99319 * 6 5 4 30 30 H 1.07999 * 119.91048 * 180.02562 * 7 5 4 31 31 H 1.09000 * 109.46988 * 90.00407 * 9 8 7 32 32 H 1.09007 * 109.46837 * 210.00165 * 9 8 7 33 33 H 1.08999 * 109.47486 * 329.99681 * 9 8 7 34 34 H 1.08004 * 120.01343 * 179.97438 * 10 8 7 35 35 H 0.96997 * 120.00185 * 180.02562 * 12 11 10 36 36 H 1.08993 * 109.47254 * 300.00407 * 13 12 11 37 37 H 1.09000 * 109.46582 * 60.00240 * 13 12 11 38 38 H 0.96998 * 120.00043 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3547 1.5255 -0.0005 5 6 4.0425 1.6165 -1.1993 6 6 3.2973 1.5119 -2.5050 7 6 5.4125 1.8038 -1.1983 8 6 6.1000 1.9002 -0.0027 9 6 7.5932 2.1037 -0.0085 10 6 5.4213 1.8093 1.1979 11 6 4.0467 1.6224 1.2048 12 7 3.3570 1.5306 2.4192 13 6 4.0866 1.6325 3.6855 14 6 3.1199 1.5021 4.8342 15 1 2.0673 1.3574 4.6403 16 6 3.5792 1.5676 6.1326 17 7 4.8610 1.7434 6.3686 18 14 2.3810 1.4054 7.5564 19 1 2.2542 -0.0247 7.9361 20 1 2.8835 2.1832 8.7173 21 1 1.0527 1.9286 7.1476 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.9789 2.5049 -2.8222 28 1 3.9514 1.0807 -3.2631 29 1 2.4230 0.8743 -2.3744 30 1 5.9470 1.8749 -2.1341 31 1 7.8144 3.1710 -0.0122 32 1 8.0258 1.6461 0.8812 33 1 8.0195 1.6412 -0.8987 34 1 5.9607 1.8846 2.1305 35 1 2.3959 1.3995 2.4225 36 1 4.8280 0.8356 3.7428 37 1 4.5874 2.5992 3.7394 38 1 5.1841 1.7898 7.2820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084912651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:19 Heat of formation + Delta-G solvation = -53.323096 kcal Electronic energy + Delta-G solvation = -18159.484251 eV Core-core repulsion = 15386.461979 eV Total energy + Delta-G solvation = -2773.022272 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.15317 -38.48907 -37.03501 -34.76155 -33.92273 -32.30438 -31.15280 -28.62643 -27.79310 -26.95061 -24.67938 -23.77001 -22.11608 -21.38833 -19.27917 -18.43070 -17.72188 -16.84145 -16.49672 -16.16258 -15.68710 -15.28822 -14.93718 -14.69822 -14.46249 -14.40999 -13.95966 -13.85319 -13.41948 -13.33923 -13.08781 -12.91631 -12.90365 -12.65625 -12.61619 -12.38089 -12.29199 -12.06938 -11.80288 -11.48140 -10.95271 -10.70553 -10.49817 -9.29375 -8.34641 -8.14331 -6.49136 0.35963 0.73176 1.37523 1.39392 1.50826 2.30616 2.55457 2.84109 2.99837 3.09771 3.93777 4.02129 4.10000 4.29101 4.38443 4.44114 4.53226 4.56920 4.65858 4.76974 4.85105 4.87851 4.91229 4.95002 5.00059 5.06819 5.13226 5.23078 5.23903 5.32200 5.41394 5.49035 5.64155 5.80273 5.82750 6.03794 6.36931 6.57892 6.80317 7.09227 7.24268 8.77283 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.006477 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.272356 B = 4321.948612 C = 5680.221973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.336 6.336 4 C -0.020 4.020 5 C -0.057 4.057 6 C -0.102 4.102 7 C -0.180 4.180 8 C -0.040 4.040 9 C -0.110 4.110 10 C -0.226 4.226 11 C 0.192 3.808 12 N -0.731 5.731 13 C 0.276 3.724 14 C -0.560 4.560 15 H 0.066 0.934 16 C 0.011 3.989 17 N -0.925 5.925 18 Si 0.979 3.021 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.264 1.264 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.152 0.848 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.394 0.606 36 H -0.009 1.009 37 H -0.011 1.011 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 -2.576 -16.499 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.254 6.254 4 C -0.068 4.068 5 C -0.058 4.058 6 C -0.158 4.158 7 C -0.200 4.200 8 C -0.041 4.041 9 C -0.166 4.166 10 C -0.249 4.249 11 C 0.085 3.915 12 N -0.356 5.356 13 C 0.153 3.847 14 C -0.598 4.598 15 H 0.084 0.916 16 C -0.189 4.189 17 N -0.563 5.563 18 Si 0.802 3.198 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.188 1.188 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.112 0.888 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.170 0.830 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.228 0.772 36 H 0.009 0.991 37 H 0.007 0.993 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.968 -2.409 -16.146 16.443 hybrid contribution -0.469 -0.214 1.486 1.573 sum -2.437 -2.623 -14.659 15.090 Atomic orbital electron populations 1.21742 0.91557 1.03617 1.03047 1.22867 0.96736 0.82824 1.00095 1.86091 1.17670 1.27389 1.94243 1.18063 0.83714 1.14208 0.90786 1.20232 0.94222 0.96755 0.94558 1.20710 0.99823 1.02953 0.92323 1.20792 0.92740 1.08612 0.97896 1.19996 0.97287 0.95074 0.91757 1.20829 0.89414 1.02918 1.03450 1.20548 0.92277 1.13300 0.98771 1.18713 0.92326 0.93998 0.86468 1.45132 1.09523 1.78005 1.02950 1.18541 0.92029 0.93633 0.80459 1.21538 0.94616 1.52028 0.91590 0.91594 1.25922 0.97333 0.93808 1.01827 1.70076 1.15169 1.49190 1.21894 0.85245 0.78522 0.78592 0.77432 1.19430 1.20242 1.18833 0.92831 0.90867 0.88817 0.91938 0.95239 0.90367 0.89331 0.91760 0.83008 0.90155 0.92315 0.88974 0.88184 0.77180 0.99123 0.99290 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 10.28 71.98 0.74 -2.42 16 2 C 0.05 1.41 6.41 71.98 0.46 1.87 16 3 O -0.34 -11.76 8.52 -93.75 -0.80 -12.56 16 4 C -0.02 -0.73 5.71 22.59 0.13 -0.60 16 5 C -0.06 -1.72 5.89 -19.79 -0.12 -1.83 16 6 C -0.10 -2.22 9.79 71.24 0.70 -1.53 16 7 C -0.18 -5.09 9.35 22.28 0.21 -4.88 16 8 C -0.04 -1.31 5.88 -19.86 -0.12 -1.42 16 9 C -0.11 -2.69 10.01 71.24 0.71 -1.98 16 10 C -0.23 -9.35 8.96 22.38 0.20 -9.15 16 11 C 0.19 8.34 6.67 38.22 0.25 8.59 16 12 N -0.73 -35.18 5.72 -342.68 -1.96 -37.14 16 13 C 0.28 15.44 4.67 85.63 0.40 15.84 16 14 C -0.56 -32.15 9.28 25.60 0.24 -31.92 16 15 H 0.07 3.63 7.60 -2.91 -0.02 3.61 16 16 C 0.01 0.63 5.46 84.65 0.46 1.09 16 17 N -0.92 -55.31 13.29 21.45 0.28 -55.02 16 18 Si 0.98 43.68 29.54 68.60 2.03 45.71 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 23 H 0.07 1.44 8.14 -2.38 -0.02 1.43 16 24 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 25 H 0.06 1.56 7.24 -2.39 -0.02 1.54 16 26 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 1.46 8.09 -2.38 -0.02 1.44 16 29 H 0.06 1.40 6.30 -2.39 -0.02 1.39 16 30 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.52 8.08 -2.38 -0.02 1.50 16 33 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 34 H 0.10 4.59 6.74 -2.91 -0.02 4.57 16 35 H 0.39 18.35 7.68 -92.71 -0.71 17.63 16 36 H -0.01 -0.54 7.95 -2.39 -0.02 -0.56 16 37 H -0.01 -0.65 7.95 -2.39 -0.02 -0.67 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -66.17 317.68 4.15 -62.03 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.33 Total: 25.32 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 4.27 Total: -28.33 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -1.68 Total: -92.16 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.80 Total: -12.56 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.17 4.15 -62.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084912651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.702 kcal (2) G-P(sol) polarization free energy of solvation -66.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds