Wall clock time and date at job start Mon Mar 30 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31195 * 1 3 3 Si 1.86805 * 119.99908 * 2 1 4 4 H 1.48500 * 109.47100 * 270.00034 * 3 2 1 5 5 H 1.48501 * 109.47245 * 30.00795 * 3 2 1 6 6 H 1.48507 * 109.46932 * 150.00436 * 3 2 1 7 7 C 1.39551 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00338 * 179.97438 * 7 2 1 9 9 C 1.41197 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.41804 * 126.63055 * 359.97438 * 9 7 2 11 11 N 1.30258 * 108.25627 * 180.02562 * 10 9 7 12 12 N 1.39855 * 109.53710 * 0.02562 * 11 10 9 13 13 C 1.46497 * 125.69975 * 179.97438 * 12 11 10 14 14 C 1.54239 * 108.89738 * 62.90915 * 13 12 11 15 15 C 1.50471 * 108.52543 * 159.26504 * 14 13 12 16 16 C 1.54073 * 112.49898 * 94.15233 * 15 14 13 17 17 C 1.54059 * 112.81638 * 318.27955 * 16 15 14 18 18 C 1.50476 * 112.49867 * 318.29014 * 17 16 15 19 19 C 1.45543 * 108.89579 * 300.02737 * 13 12 11 20 20 C 1.35149 * 108.59747 * 359.97438 * 12 11 10 21 21 N 1.37736 * 126.55917 * 179.97438 * 20 12 11 22 22 H 0.97002 * 120.00013 * 359.97438 * 1 2 3 23 23 H 1.08005 * 125.87396 * 0.04246 * 10 9 7 24 24 H 1.08999 * 108.87436 * 181.41935 * 13 12 11 25 25 H 1.09004 * 109.62515 * 278.97502 * 14 13 12 26 26 H 1.08997 * 109.63183 * 39.55243 * 14 13 12 27 27 H 1.08990 * 108.87965 * 333.37033 * 15 14 13 28 28 H 1.09005 * 108.87589 * 214.92297 * 15 14 13 29 29 H 1.09007 * 108.81077 * 197.41683 * 16 15 14 30 30 H 1.09001 * 108.72820 * 79.08650 * 16 15 14 31 31 H 1.08998 * 108.87865 * 197.51020 * 17 16 15 32 32 H 1.08998 * 108.79647 * 79.00845 * 17 16 15 33 33 H 1.09005 * 109.62464 * 334.44055 * 18 17 16 34 34 H 1.09002 * 109.62865 * 213.86500 * 18 17 16 35 35 H 1.09007 * 108.89293 * 303.43828 * 19 13 12 36 36 H 1.08992 * 108.89997 * 61.93397 * 19 13 12 37 37 H 0.96996 * 120.00253 * 0.02562 * 21 20 12 38 38 H 0.97001 * 119.99698 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2460 1.6178 0.0000 4 1 2.4934 2.0465 -1.4001 5 1 1.4435 2.6527 0.7002 6 1 3.5436 1.4402 0.7000 7 6 2.0098 -1.2085 -0.0005 8 1 3.0898 -1.2085 -0.0010 9 6 1.3038 -2.4314 -0.0005 10 6 -0.1047 -2.5952 0.0005 11 7 -0.3671 -3.8710 0.0007 12 7 0.8297 -4.5947 0.0004 13 6 0.9456 -6.0551 0.0010 14 6 0.3220 -6.6063 -1.2976 15 6 0.8732 -7.9843 -1.5452 16 6 -0.0338 -9.0929 -0.9776 17 6 -0.5981 -8.7490 0.4141 18 6 0.4288 -8.1112 1.3102 19 6 0.2966 -6.5789 1.1938 20 6 1.8613 -3.7216 -0.0006 21 7 3.2022 -4.0361 -0.0006 22 1 -0.4850 0.8401 0.0004 23 1 -0.8345 -1.7990 0.0008 24 1 2.0014 -6.3249 0.0261 25 1 -0.7614 -6.6592 -1.1897 26 1 0.5782 -5.9540 -2.1324 27 1 1.8559 -8.0600 -1.0798 28 1 0.9815 -8.1330 -2.6196 29 1 0.5420 -10.0156 -0.9054 30 1 -0.8651 -9.2510 -1.6648 31 1 -0.9574 -9.6640 0.8849 32 1 -1.4360 -8.0624 0.2935 33 1 1.4275 -8.4174 0.9985 34 1 0.2546 -8.4165 2.3420 35 1 0.7480 -6.1180 2.0725 36 1 -0.7610 -6.3171 1.1641 37 1 3.4827 -4.9646 -0.0003 38 1 3.8662 -3.3289 -0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087579930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:02 Heat of formation + Delta-G solvation = 58.077241 kcal Electronic energy + Delta-G solvation = -18665.937497 eV Core-core repulsion = 15930.038657 eV Total energy + Delta-G solvation = -2735.898840 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78351 -38.08078 -33.64797 -33.19489 -32.41473 -32.02705 -28.67858 -27.52233 -24.77703 -24.53049 -23.46866 -21.04536 -19.37785 -19.17306 -18.67755 -17.04073 -16.07084 -15.51956 -15.12247 -14.55298 -14.50836 -14.31684 -13.62976 -13.21719 -12.94380 -12.71347 -12.48378 -12.10057 -11.99766 -11.22990 -11.19873 -11.04864 -10.73500 -10.67090 -10.55687 -10.52493 -10.32576 -10.27315 -10.11444 -9.78114 -9.59111 -9.02760 -8.56005 -7.26882 -6.43621 -6.16711 -3.59692 3.20069 3.31283 3.34032 3.68201 3.76452 4.31815 4.61228 4.65229 4.84613 4.91254 5.02292 5.17688 5.24732 5.33507 5.43620 5.52172 5.67623 5.78344 5.80349 5.85098 6.00127 6.16057 6.18041 6.20780 6.25287 6.34140 6.46671 6.59306 6.65522 6.96325 7.19143 7.41351 7.83549 8.01386 8.33274 8.75452 8.85237 8.98735 9.33952 9.42865 9.77835 10.84991 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.047165 B = 0.005249 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.517676 B = 5332.852074 C = 5493.291504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.059 3.941 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.424 4.424 8 H 0.058 0.942 9 C -0.085 4.085 10 C 0.053 3.947 11 N -0.359 5.359 12 N -0.406 5.406 13 C 0.191 3.809 14 C -0.120 4.120 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.129 4.129 20 C 0.208 3.792 21 N -0.862 5.862 22 H 0.267 0.733 23 H 0.201 0.799 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.375 0.625 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 -14.329 -0.231 14.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.148 4.148 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.461 4.461 8 H 0.076 0.924 9 C -0.099 4.099 10 C -0.132 4.132 11 N -0.183 5.183 12 N -0.198 5.198 13 C 0.087 3.913 14 C -0.158 4.158 15 C -0.155 4.155 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.150 4.150 19 C -0.167 4.167 20 C -0.012 4.012 21 N -0.413 5.413 22 H 0.078 0.922 23 H 0.217 0.783 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.201 0.799 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.947 -15.069 -0.225 15.100 hybrid contribution 1.584 1.348 -0.014 2.080 sum 2.531 -13.721 -0.239 13.954 Atomic orbital electron populations 1.69500 1.06699 1.26992 1.46016 1.25412 0.94735 0.99755 0.94887 0.86325 0.79750 0.82094 0.78284 1.20478 1.20964 1.19675 1.18333 0.92759 0.89233 1.45737 0.92366 1.17445 0.91817 0.89178 1.11499 1.24806 0.97436 0.91983 0.98941 1.76638 1.03158 1.06421 1.32121 1.47817 1.03463 1.03032 1.65461 1.19572 0.98764 0.77832 0.95108 1.21651 1.01624 0.95199 0.97361 1.21310 0.99120 0.94577 1.00457 1.21910 0.99112 0.97869 0.96353 1.21369 0.99016 1.00442 0.95001 1.21263 0.99545 0.94835 0.99315 1.20848 1.03149 0.94734 0.97945 1.18172 0.80992 0.90174 1.11843 1.40606 1.02580 1.08144 1.89981 0.92213 0.78299 0.91354 0.90821 0.91515 0.92344 0.92270 0.92596 0.92408 0.92606 0.91646 0.91869 0.91865 0.92139 0.90481 0.79943 0.76648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.70 10.32 55.53 0.57 -23.13 16 2 C 0.06 1.59 5.49 -17.33 -0.10 1.49 16 3 Si 0.91 20.50 29.56 -169.99 -5.02 15.47 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.42 -11.79 9.24 -37.97 -0.35 -12.14 16 8 H 0.06 1.54 7.36 -52.48 -0.39 1.15 16 9 C -0.09 -2.36 5.96 -106.54 -0.63 -2.99 16 10 C 0.05 1.45 10.90 -16.86 -0.18 1.27 16 11 N -0.36 -9.12 12.24 30.94 0.38 -8.74 16 12 N -0.41 -9.08 3.17 -56.02 -0.18 -9.26 16 13 C 0.19 3.24 2.43 -70.80 -0.17 3.07 16 14 C -0.12 -1.85 5.16 -27.35 -0.14 -1.99 16 15 C -0.12 -1.37 5.31 -27.43 -0.15 -1.51 16 16 C -0.11 -1.18 5.85 -25.62 -0.15 -1.33 16 17 C -0.12 -1.31 5.32 -27.44 -0.15 -1.46 16 18 C -0.11 -1.29 5.61 -27.34 -0.15 -1.45 16 19 C -0.13 -2.00 4.65 -29.60 -0.14 -2.14 16 20 C 0.21 4.98 8.06 -153.30 -1.24 3.75 16 21 N -0.86 -16.50 9.03 31.65 0.29 -16.21 16 22 H 0.27 6.89 8.30 -40.82 -0.34 6.55 16 23 H 0.20 5.69 5.76 -52.48 -0.30 5.39 16 24 H 0.07 1.06 6.07 -51.93 -0.32 0.75 16 25 H 0.07 1.19 6.97 -51.93 -0.36 0.83 16 26 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 27 H 0.06 0.65 6.63 -51.93 -0.34 0.30 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.80 6.63 -51.93 -0.34 0.45 16 33 H 0.06 0.68 6.98 -51.93 -0.36 0.32 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.34 7.45 -51.93 -0.39 0.95 16 37 H 0.37 5.92 7.60 -40.82 -0.31 5.61 16 38 H 0.40 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 294.64 15.07 4.44 4.44 Total: -1.00 -30.11 294.64 -8.62 -38.72 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -5.55 Total: 14.14 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -3.55 Total: -15.43 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 1.06 Total: -57.34 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.11 -8.62 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087579930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.801 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds