Wall clock time and date at job start Mon Mar 30 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31195 * 1 3 3 Si 1.86805 * 119.99908 * 2 1 4 4 H 1.48500 * 109.47100 * 270.00034 * 3 2 1 5 5 H 1.48501 * 109.47245 * 30.00795 * 3 2 1 6 6 H 1.48507 * 109.46932 * 150.00436 * 3 2 1 7 7 C 1.39551 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00338 * 179.97438 * 7 2 1 9 9 C 1.41197 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.41804 * 126.63055 * 359.97438 * 9 7 2 11 11 N 1.30258 * 108.25627 * 180.02562 * 10 9 7 12 12 N 1.39855 * 109.53710 * 0.02562 * 11 10 9 13 13 C 1.46497 * 125.69975 * 179.97438 * 12 11 10 14 14 C 1.54239 * 108.89738 * 62.90915 * 13 12 11 15 15 C 1.50471 * 108.52543 * 159.26504 * 14 13 12 16 16 C 1.54073 * 112.49898 * 94.15233 * 15 14 13 17 17 C 1.54059 * 112.81638 * 318.27955 * 16 15 14 18 18 C 1.50476 * 112.49867 * 318.29014 * 17 16 15 19 19 C 1.45543 * 108.89579 * 300.02737 * 13 12 11 20 20 C 1.35149 * 108.59747 * 359.97438 * 12 11 10 21 21 N 1.37736 * 126.55917 * 179.97438 * 20 12 11 22 22 H 0.97002 * 120.00013 * 359.97438 * 1 2 3 23 23 H 1.08005 * 125.87396 * 0.04246 * 10 9 7 24 24 H 1.08999 * 108.87436 * 181.41935 * 13 12 11 25 25 H 1.09004 * 109.62515 * 278.97502 * 14 13 12 26 26 H 1.08997 * 109.63183 * 39.55243 * 14 13 12 27 27 H 1.08990 * 108.87965 * 333.37033 * 15 14 13 28 28 H 1.09005 * 108.87589 * 214.92297 * 15 14 13 29 29 H 1.09007 * 108.81077 * 197.41683 * 16 15 14 30 30 H 1.09001 * 108.72820 * 79.08650 * 16 15 14 31 31 H 1.08998 * 108.87865 * 197.51020 * 17 16 15 32 32 H 1.08998 * 108.79647 * 79.00845 * 17 16 15 33 33 H 1.09005 * 109.62464 * 334.44055 * 18 17 16 34 34 H 1.09002 * 109.62865 * 213.86500 * 18 17 16 35 35 H 1.09007 * 108.89293 * 303.43828 * 19 13 12 36 36 H 1.08992 * 108.89997 * 61.93397 * 19 13 12 37 37 H 0.96996 * 120.00253 * 0.02562 * 21 20 12 38 38 H 0.97001 * 119.99698 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2460 1.6178 0.0000 4 1 2.4934 2.0465 -1.4001 5 1 1.4435 2.6527 0.7002 6 1 3.5436 1.4402 0.7000 7 6 2.0098 -1.2085 -0.0005 8 1 3.0898 -1.2085 -0.0010 9 6 1.3038 -2.4314 -0.0005 10 6 -0.1047 -2.5952 0.0005 11 7 -0.3671 -3.8710 0.0007 12 7 0.8297 -4.5947 0.0004 13 6 0.9456 -6.0551 0.0010 14 6 0.3220 -6.6063 -1.2976 15 6 0.8732 -7.9843 -1.5452 16 6 -0.0338 -9.0929 -0.9776 17 6 -0.5981 -8.7490 0.4141 18 6 0.4288 -8.1112 1.3102 19 6 0.2966 -6.5789 1.1938 20 6 1.8613 -3.7216 -0.0006 21 7 3.2022 -4.0361 -0.0006 22 1 -0.4850 0.8401 0.0004 23 1 -0.8345 -1.7990 0.0008 24 1 2.0014 -6.3249 0.0261 25 1 -0.7614 -6.6592 -1.1897 26 1 0.5782 -5.9540 -2.1324 27 1 1.8559 -8.0600 -1.0798 28 1 0.9815 -8.1330 -2.6196 29 1 0.5420 -10.0156 -0.9054 30 1 -0.8651 -9.2510 -1.6648 31 1 -0.9574 -9.6640 0.8849 32 1 -1.4360 -8.0624 0.2935 33 1 1.4275 -8.4174 0.9985 34 1 0.2546 -8.4165 2.3420 35 1 0.7480 -6.1180 2.0725 36 1 -0.7610 -6.3171 1.1641 37 1 3.4827 -4.9646 -0.0003 38 1 3.8662 -3.3289 -0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087579930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:02 Heat of formation + Delta-G solvation = 40.088904 kcal Electronic energy + Delta-G solvation = -18666.717530 eV Core-core repulsion = 15930.038657 eV Total energy + Delta-G solvation = -2736.678873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48129 -39.43795 -35.38984 -35.00588 -33.92257 -33.10231 -30.39657 -29.41191 -26.38253 -25.71782 -24.94558 -22.57564 -21.16350 -20.43633 -20.11140 -18.87121 -17.84523 -16.97563 -16.67992 -16.19155 -15.80970 -15.52895 -15.08433 -14.77901 -14.41295 -14.12790 -13.96531 -13.35636 -13.11707 -13.03984 -12.82819 -12.76415 -12.46515 -12.15596 -11.87641 -11.77335 -11.60029 -11.41058 -11.39959 -11.25214 -11.13089 -10.98407 -10.54803 -9.16534 -8.36608 -8.15167 -5.64823 1.41724 1.47164 1.58976 1.76329 2.07039 2.43552 2.55597 3.35760 3.52640 3.70919 3.81170 3.95714 4.13229 4.18137 4.26133 4.33843 4.40378 4.52192 4.71586 4.88942 4.95156 4.99047 5.10060 5.16131 5.20683 5.27696 5.30472 5.34753 5.36775 5.42130 5.50658 5.57293 5.88320 6.18715 6.30908 6.76012 7.09379 7.09772 7.35619 7.48093 7.82424 8.87493 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.047165 B = 0.005249 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.517676 B = 5332.852074 C = 5493.291504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.006 3.994 3 Si 0.981 3.019 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.451 4.451 8 H 0.064 0.936 9 C -0.139 4.139 10 C 0.021 3.979 11 N -0.373 5.373 12 N -0.396 5.396 13 C 0.179 3.821 14 C -0.110 4.110 15 C -0.112 4.112 16 C -0.112 4.112 17 C -0.122 4.122 18 C -0.100 4.100 19 C -0.123 4.123 20 C 0.230 3.770 21 N -0.842 5.842 22 H 0.269 0.731 23 H 0.181 0.819 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.051 0.949 37 H 0.396 0.604 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.153 -16.694 -0.225 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.197 4.197 3 Si 0.805 3.195 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.487 4.487 8 H 0.082 0.918 9 C -0.153 4.153 10 C -0.161 4.161 11 N -0.199 5.199 12 N -0.187 5.187 13 C 0.078 3.922 14 C -0.149 4.149 15 C -0.150 4.150 16 C -0.149 4.149 17 C -0.159 4.159 18 C -0.138 4.138 19 C -0.161 4.161 20 C 0.006 3.994 21 N -0.395 5.395 22 H 0.079 0.921 23 H 0.197 0.803 24 H 0.111 0.889 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.225 0.775 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.980 -17.483 -0.220 17.736 hybrid contribution 0.980 1.894 -0.012 2.133 sum 3.960 -15.588 -0.232 16.085 Atomic orbital electron populations 1.69655 1.08129 1.27747 1.46919 1.26290 0.95613 1.03196 0.94563 0.85201 0.78496 0.77442 0.78318 1.20018 1.20684 1.18747 1.18633 0.93144 0.90100 1.46810 0.91760 1.17818 0.92183 0.90908 1.14388 1.24560 0.97666 0.92481 1.01355 1.76539 1.04634 1.05817 1.32926 1.48279 1.02255 1.05001 1.63206 1.20147 1.00676 0.74629 0.96733 1.21543 1.00891 0.97245 0.95227 1.21282 0.99847 0.92277 1.01613 1.21903 0.99244 0.98053 0.95720 1.21373 0.98135 1.00846 0.95581 1.21231 1.00900 0.91065 1.00610 1.20792 1.01042 0.98002 0.96293 1.18352 0.82893 0.89725 1.08479 1.40543 1.00625 1.09800 1.88541 0.92127 0.80259 0.88905 0.92191 0.94075 0.90860 0.91149 0.90104 0.92165 0.90425 0.93758 0.89956 0.90449 0.93841 0.93030 0.77494 0.75871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.30 10.32 21.77 0.22 -51.07 16 2 C 0.01 0.36 5.49 85.10 0.47 0.82 16 3 Si 0.98 42.76 29.56 68.60 2.03 44.79 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.45 -25.60 9.24 23.31 0.22 -25.39 16 8 H 0.06 3.41 7.36 -2.91 -0.02 3.39 16 9 C -0.14 -7.88 5.96 -21.11 -0.13 -8.01 16 10 C 0.02 1.25 10.90 85.81 0.94 2.18 16 11 N -0.37 -19.71 12.24 -56.02 -0.69 -20.39 16 12 N -0.40 -17.79 3.17 -331.16 -1.05 -18.84 16 13 C 0.18 5.85 2.43 43.13 0.10 5.96 16 14 C -0.11 -3.29 5.16 30.20 0.16 -3.13 16 15 C -0.11 -2.26 5.31 30.14 0.16 -2.10 16 16 C -0.11 -1.87 5.85 31.31 0.18 -1.69 16 17 C -0.12 -2.28 5.32 30.14 0.16 -2.12 16 18 C -0.10 -2.00 5.61 30.20 0.17 -1.83 16 19 C -0.12 -3.70 4.65 28.74 0.13 -3.56 16 20 C 0.23 10.97 8.06 133.00 1.07 12.04 16 21 N -0.84 -30.56 9.03 -53.77 -0.49 -31.05 16 22 H 0.27 14.44 8.30 -92.71 -0.77 13.67 16 23 H 0.18 11.04 5.76 -2.91 -0.02 11.02 16 24 H 0.09 2.58 6.07 -2.39 -0.01 2.57 16 25 H 0.06 1.94 6.97 -2.38 -0.02 1.92 16 26 H 0.04 1.43 8.13 -2.39 -0.02 1.41 16 27 H 0.07 1.28 6.63 -2.39 -0.02 1.27 16 28 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.08 1.02 8.14 -2.38 -0.02 1.01 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 1.02 6.63 -2.39 -0.02 1.01 16 33 H 0.08 1.38 6.98 -2.38 -0.02 1.36 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.05 1.81 7.45 -2.39 -0.02 1.80 16 37 H 0.40 11.20 7.60 -92.71 -0.70 10.50 16 38 H 0.41 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -68.53 294.64 3.27 -65.26 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: -0.40 Total: 38.13 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 3.63 Total: -26.83 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -2.00 Total: -121.35 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -68.53 3.27 -65.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087579930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.351 kcal (2) G-P(sol) polarization free energy of solvation -68.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds