Wall clock time and date at job start Mon Mar 30 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 C 1.53004 * 109.47276 * 119.99581 * 2 1 3 5 5 N 1.46501 * 109.46989 * 175.00157 * 4 2 1 6 6 C 1.46504 * 119.99885 * 270.00356 * 5 4 2 7 7 C 1.50706 * 109.46968 * 270.00171 * 6 5 4 8 8 H 1.08003 * 120.00046 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99927 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99841 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 120.00017 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47027 * 90.00381 * 11 9 7 13 13 H 1.48505 * 109.46875 * 209.99913 * 11 9 7 14 14 H 1.48502 * 109.47008 * 329.99980 * 11 9 7 15 15 C 1.38989 * 120.00186 * 90.00210 * 5 4 2 16 16 C 1.39006 * 119.66038 * 185.27580 * 15 5 4 17 17 C 1.38511 * 119.25663 * 180.27983 * 16 15 5 18 18 C 1.38549 * 118.58963 * 359.45299 * 17 16 15 19 19 C 1.38966 * 119.26327 * 0.27823 * 18 17 16 20 20 N 1.38990 * 119.66021 * 180.02562 * 19 18 17 21 21 N 1.32465 * 119.65852 * 4.99965 * 15 5 4 22 22 H 1.08997 * 109.47052 * 300.00001 * 1 2 3 23 23 H 1.08993 * 109.47030 * 60.00134 * 1 2 3 24 24 H 1.09005 * 109.46908 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47527 * 240.00011 * 2 1 3 26 26 H 1.08997 * 109.47255 * 60.00123 * 3 2 1 27 27 H 1.09003 * 109.47266 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47240 * 299.99668 * 3 2 1 29 29 H 1.08997 * 109.46544 * 55.00613 * 4 2 1 30 30 H 1.08996 * 109.47273 * 295.00222 * 4 2 1 31 31 H 1.08997 * 109.47448 * 29.99859 * 6 5 4 32 32 H 1.08999 * 109.46971 * 150.00660 * 6 5 4 33 33 H 0.97005 * 119.99725 * 179.97438 * 10 9 7 34 34 H 1.07990 * 120.37290 * 0.02562 * 16 15 5 35 35 H 1.08002 * 120.70759 * 179.73359 * 17 16 15 36 36 H 1.08004 * 120.37333 * 180.25644 * 18 17 16 37 37 H 0.97002 * 120.00348 * 0.02562 * 20 19 18 38 38 H 0.97004 * 120.00035 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1906 6 6 4.1259 -1.9918 0.5612 7 6 4.3422 -3.0659 1.5960 8 1 4.0437 -2.8969 2.6202 9 6 4.9220 -4.2637 1.2355 10 7 5.1112 -5.2008 2.1387 11 14 5.4388 -4.5556 -0.5357 12 1 6.8414 -4.1053 -0.7227 13 1 5.3380 -6.0038 -0.8485 14 1 4.5477 -3.7898 -1.4439 15 6 4.2916 0.1799 1.7320 16 6 5.6719 0.1282 1.5760 17 6 6.4531 1.1322 2.1239 18 6 5.8260 2.1646 2.8024 19 6 4.4411 2.1593 2.9174 20 7 3.8033 3.1912 3.5959 21 7 3.7224 1.1810 2.3866 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6055 -1.7197 1.2952 30 1 1.7517 -0.1582 2.1370 31 1 3.4758 -2.3721 -0.2267 32 1 5.0852 -1.7019 0.1325 33 1 5.5188 -6.0437 1.8850 34 1 6.1303 -0.6877 1.0372 35 1 7.5280 1.1131 2.0205 36 1 6.4069 2.9645 3.2374 37 1 4.3246 3.9104 3.9858 38 1 2.8368 3.1926 3.6788 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087727112.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:07 Heat of formation + Delta-G solvation = 21.042149 kcal Electronic energy + Delta-G solvation = -18691.211140 eV Core-core repulsion = 15953.706338 eV Total energy + Delta-G solvation = -2737.504802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.08416 -38.51708 -35.99467 -35.05882 -34.08562 -32.83466 -29.92339 -29.47924 -27.92331 -26.43259 -24.70321 -23.33552 -22.11823 -20.76490 -19.03863 -18.50709 -18.06673 -16.82488 -16.45150 -16.29437 -16.11394 -15.66314 -15.29816 -14.91681 -14.48950 -14.47161 -13.91496 -13.75954 -13.51386 -13.10086 -12.91844 -12.77860 -12.55010 -12.42282 -12.22828 -11.89308 -11.83079 -11.64288 -11.56487 -11.44690 -10.80574 -10.66138 -10.13945 -9.15794 -8.31617 -7.97318 -6.37295 0.82272 0.85644 1.36540 1.37501 1.48176 2.23856 2.32513 2.95592 3.02762 3.29975 3.98919 4.01640 4.10630 4.25090 4.43761 4.56312 4.60311 4.69654 4.76077 4.82341 4.84159 4.88307 4.96224 5.01515 5.10144 5.13581 5.24603 5.29268 5.45869 5.49806 5.53374 5.71547 5.81869 6.01195 6.35634 6.55980 6.65460 6.86096 6.92604 7.27179 7.68207 8.85899 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.008343 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.000462 B = 3355.281224 C = 4373.471489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C -0.117 4.117 4 C 0.137 3.863 5 N -0.595 5.595 6 C 0.238 3.762 7 C -0.536 4.536 8 H 0.022 0.978 9 C 0.014 3.986 10 N -0.946 5.946 11 Si 0.945 3.055 12 H -0.263 1.263 13 H -0.280 1.280 14 H -0.242 1.242 15 C 0.443 3.557 16 C -0.320 4.320 17 C -0.003 4.003 18 C -0.312 4.312 19 C 0.428 3.572 20 N -0.839 5.839 21 N -0.609 5.609 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.027 0.973 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.268 0.732 34 H 0.112 0.888 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.419 0.581 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 16.668 -3.655 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.174 4.174 4 C 0.014 3.986 5 N -0.304 5.304 6 C 0.115 3.885 7 C -0.575 4.575 8 H 0.040 0.960 9 C -0.184 4.184 10 N -0.586 5.586 11 Si 0.768 3.232 12 H -0.188 1.188 13 H -0.206 1.206 14 H -0.165 1.165 15 C 0.207 3.793 16 C -0.347 4.347 17 C -0.028 4.028 18 C -0.339 4.339 19 C 0.188 3.812 20 N -0.385 5.385 21 N -0.338 5.338 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.251 0.749 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.502 16.323 -3.642 17.320 hybrid contribution 1.128 -0.728 -0.076 1.345 sum -3.374 15.595 -3.719 16.383 Atomic orbital electron populations 1.21692 0.92971 1.02010 1.02511 1.21483 0.97005 0.96769 0.97386 1.21576 0.99514 0.95254 1.01064 1.21370 0.79230 0.99471 0.98560 1.46591 1.05084 1.18799 1.59940 1.19389 0.93985 0.82651 0.92466 1.21614 1.40551 0.99716 0.95609 0.95956 1.25841 0.94936 0.95182 1.02411 1.70070 1.45133 1.06982 1.36428 0.85750 0.80017 0.78059 0.79412 1.18787 1.20585 1.16530 1.17989 0.88027 0.86084 0.87153 1.21297 0.93371 1.05152 1.14877 1.21239 1.00261 0.90670 0.90678 1.21153 0.93233 1.05075 1.14407 1.18240 0.88839 0.86678 0.87465 1.42036 1.10449 1.24737 1.61235 1.66500 1.40225 1.05897 1.21217 0.92125 0.91238 0.92667 0.92594 0.92514 0.95383 0.92609 0.92734 0.90982 0.94348 0.94639 0.92298 0.86980 0.83397 0.83328 0.74897 0.76741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.19 71.98 0.66 -2.53 16 2 C -0.11 -3.25 3.13 -10.79 -0.03 -3.29 16 3 C -0.12 -3.44 7.96 71.98 0.57 -2.86 16 4 C 0.14 5.19 5.01 86.38 0.43 5.63 16 5 N -0.60 -26.01 2.44 -708.31 -1.73 -27.74 16 6 C 0.24 11.39 4.08 85.63 0.35 11.74 16 7 C -0.54 -31.18 9.94 25.60 0.25 -30.92 16 8 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 9 C 0.01 0.83 5.47 84.65 0.46 1.29 16 10 N -0.95 -59.23 13.96 21.45 0.30 -58.94 16 11 Si 0.95 42.84 27.47 68.60 1.88 44.73 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 15 C 0.44 18.68 5.78 133.02 0.77 19.45 16 16 C -0.32 -13.11 9.27 22.52 0.21 -12.90 16 17 C 0.00 -0.10 10.16 22.41 0.23 0.13 16 18 C -0.31 -9.07 9.93 22.52 0.22 -8.84 16 19 C 0.43 13.22 7.74 133.00 1.03 14.25 16 20 N -0.84 -17.57 9.07 -55.49 -0.50 -18.07 16 21 N -0.61 -22.64 7.57 -190.69 -1.44 -24.08 16 22 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.06 1.65 7.96 -2.39 -0.02 1.63 16 27 H 0.03 0.96 6.14 -2.39 -0.01 0.94 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 2.18 8.07 -2.39 -0.02 2.16 16 30 H 0.07 2.74 7.30 -2.39 -0.02 2.73 16 31 H 0.04 1.78 7.13 -2.39 -0.02 1.76 16 32 H 0.04 1.67 5.39 -2.39 -0.01 1.66 16 33 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 34 H 0.11 4.90 6.00 -2.92 -0.02 4.88 16 35 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 36 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.42 5.94 8.82 -92.71 -0.82 5.12 16 38 H 0.40 7.80 8.95 -92.71 -0.83 6.97 16 Total: -1.00 -69.51 307.87 3.03 -66.48 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.64 Total: 26.48 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 5.16 Total: -8.86 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -3.37 Total: -128.83 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.73 kcal Total: -69.51 3.03 -66.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087727112.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.523 kcal (2) G-P(sol) polarization free energy of solvation -69.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds