Wall clock time and date at job start Mon Mar 30 2020 06:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46508 * 109.46971 * 2 1 4 4 C 1.38987 * 119.99707 * 179.97438 * 3 2 1 5 5 C 1.39007 * 119.66241 * 0.02562 * 4 3 2 6 6 C 1.38513 * 119.25922 * 180.02562 * 5 4 3 7 7 C 1.38547 * 118.58923 * 0.27828 * 6 5 4 8 8 C 1.38966 * 119.26154 * 359.45262 * 7 6 5 9 9 N 1.38993 * 119.65868 * 180.27997 * 8 7 6 10 10 C 1.46495 * 120.00296 * 5.27501 * 9 8 7 11 11 C 1.53004 * 109.47137 * 90.00222 * 10 9 8 12 12 C 1.46501 * 120.00015 * 185.27589 * 9 8 7 13 13 C 1.50708 * 109.47098 * 89.99855 * 12 9 8 14 14 H 1.07993 * 119.99670 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00022 * 180.02562 * 13 12 9 16 16 N 1.31509 * 120.00016 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00160 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47101 * 90.00014 * 17 15 13 19 19 H 1.48495 * 109.47209 * 210.00379 * 17 15 13 20 20 H 1.48506 * 109.47202 * 330.00145 * 17 15 13 21 21 N 1.32468 * 119.66036 * 180.02562 * 4 3 2 22 22 H 1.09002 * 109.46719 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47108 * 300.00310 * 1 2 3 24 24 H 1.09002 * 109.46736 * 59.99897 * 1 2 3 25 25 H 1.09001 * 109.47386 * 240.00297 * 2 1 3 26 26 H 1.09002 * 109.47159 * 119.99774 * 2 1 3 27 27 H 0.96994 * 119.99710 * 0.02562 * 3 2 1 28 28 H 1.07996 * 120.36937 * 0.04391 * 5 4 3 29 29 H 1.08002 * 120.70160 * 179.97438 * 6 5 4 30 30 H 1.07998 * 120.37154 * 179.72784 * 7 6 5 31 31 H 1.09004 * 109.47619 * 209.99794 * 10 9 8 32 32 H 1.08999 * 109.47129 * 330.00695 * 10 9 8 33 33 H 1.08994 * 109.47411 * 60.00086 * 11 10 9 34 34 H 1.08999 * 109.47172 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.47234 * 300.00096 * 11 10 9 36 36 H 1.09002 * 109.47303 * 209.99998 * 12 9 8 37 37 H 1.08999 * 109.47307 * 330.00152 * 12 9 8 38 38 H 0.96998 * 120.00501 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3849 1.6352 0.0005 5 6 4.2819 0.5733 0.0005 6 6 5.6419 0.8360 0.0016 7 6 6.0622 2.1562 0.0086 8 6 5.1131 3.1712 0.0026 9 7 5.5255 4.4985 0.0037 10 6 6.9499 4.8231 -0.1057 11 6 7.3267 4.9742 -1.5809 12 6 4.5359 5.5730 0.1141 13 6 4.3138 5.9040 1.5676 14 1 4.8559 5.3678 2.3323 15 6 3.4185 6.8912 1.9208 16 7 3.2250 7.1803 3.1890 17 14 2.4812 7.8191 0.5979 18 1 1.2073 7.1137 0.3066 19 1 2.1878 9.1953 1.0721 20 1 3.3036 7.8858 -0.6369 21 7 3.8190 2.8867 0.0010 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.3880 2.1185 0.0004 28 1 3.9224 -0.4450 -0.0006 29 1 6.3594 0.0288 0.0021 30 1 7.1157 2.3938 0.0140 31 1 7.1510 5.7576 0.4181 32 1 7.5402 4.0224 0.3398 33 1 6.7365 5.7748 -2.0266 34 1 8.3866 5.2152 -1.6623 35 1 7.1257 4.0397 -2.1049 36 1 4.9001 6.4576 -0.4084 37 1 3.5959 5.2486 -0.3323 38 1 2.5949 7.8745 3.4377 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087823847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:18 Heat of formation + Delta-G solvation = 48.940839 kcal Electronic energy + Delta-G solvation = -18245.106508 eV Core-core repulsion = 15508.811485 eV Total energy + Delta-G solvation = -2736.295024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.65290 -37.00941 -35.23889 -32.66056 -31.93491 -31.02541 -29.77812 -28.31250 -26.44041 -23.67671 -23.03622 -22.26631 -21.36724 -19.65012 -17.23792 -16.78540 -16.42001 -15.23201 -15.05105 -14.98705 -14.75157 -14.19241 -13.84907 -13.37990 -13.10421 -12.66902 -12.58337 -12.30742 -12.13393 -11.93253 -11.80531 -11.58860 -11.45851 -11.13822 -10.90359 -10.47964 -10.38338 -10.25823 -9.80563 -9.50641 -9.17311 -8.60254 -8.49250 -7.58665 -6.54187 -6.01656 -3.98439 2.18134 2.25619 3.32021 3.37517 3.40351 3.43843 4.02656 4.45001 4.71255 4.98800 5.08731 5.26086 5.30679 5.31990 5.44054 5.62057 5.69535 5.73378 5.81269 5.82974 5.89715 5.93074 6.03689 6.06619 6.16532 6.31440 6.51366 6.55898 6.82311 6.96335 6.98424 7.11590 7.51821 7.70275 7.85539 8.11270 8.33494 8.62582 9.03189 9.13664 9.59740 11.12093 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.008111 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.149135 B = 3451.329220 C = 4781.803433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 N -0.732 5.732 4 C 0.445 3.555 5 C -0.318 4.318 6 C -0.003 4.003 7 C -0.310 4.310 8 C 0.465 3.535 9 N -0.585 5.585 10 C 0.123 3.877 11 C -0.169 4.169 12 C 0.225 3.775 13 C -0.519 4.519 14 H 0.072 0.928 15 C 0.070 3.930 16 N -0.902 5.902 17 Si 0.876 3.124 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.267 1.267 21 N -0.582 5.582 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.402 0.598 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.022 0.978 37 H 0.040 0.960 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -12.566 -8.869 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.005 3.995 3 N -0.367 5.367 4 C 0.207 3.793 5 C -0.346 4.346 6 C -0.029 4.029 7 C -0.337 4.337 8 C 0.227 3.773 9 N -0.293 5.293 10 C -0.001 4.001 11 C -0.227 4.227 12 C 0.104 3.896 13 C -0.558 4.558 14 H 0.090 0.910 15 C -0.131 4.131 16 N -0.541 5.541 17 Si 0.703 3.297 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.192 1.192 21 N -0.308 5.308 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.237 0.763 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.058 0.942 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.858 -11.750 -8.748 14.674 hybrid contribution -0.287 0.202 -0.424 0.550 sum 0.570 -11.548 -9.172 14.759 Atomic orbital electron populations 1.21978 0.94778 1.02651 1.02808 1.21196 0.94122 0.83148 1.00992 1.44465 1.03231 1.07245 1.81779 1.17906 0.84866 0.88374 0.88195 1.20835 0.93428 0.97956 1.22342 1.20819 0.94687 0.95539 0.91819 1.21061 0.99367 0.92627 1.20657 1.17857 0.87309 0.85492 0.86659 1.46718 1.06149 1.02360 1.74073 1.21338 0.81368 1.01710 0.95716 1.22230 1.00677 1.02017 0.97819 1.19596 0.88046 0.84416 0.97572 1.21413 1.24170 1.19039 0.91197 0.90982 1.24846 0.96375 0.96741 0.95162 1.69907 1.36250 1.32169 1.15784 0.86858 0.81036 0.79282 0.82495 1.20090 1.21312 1.19171 1.66538 1.16340 1.19900 1.27999 0.91102 0.91829 0.92042 0.92461 0.92351 0.76260 0.86679 0.86282 0.86054 0.90053 0.91264 0.92557 0.92245 0.92813 0.96006 0.94176 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 10.03 37.16 0.37 -1.12 16 2 C 0.13 1.48 5.61 -4.03 -0.02 1.46 16 3 N -0.73 -11.54 5.73 -60.44 -0.35 -11.88 16 4 C 0.44 8.42 7.65 -155.02 -1.19 7.24 16 5 C -0.32 -5.25 9.32 -39.19 -0.37 -5.62 16 6 C 0.00 -0.05 10.16 -39.37 -0.40 -0.45 16 7 C -0.31 -5.58 9.27 -39.20 -0.36 -5.94 16 8 C 0.47 9.99 7.37 -155.01 -1.14 8.85 16 9 N -0.58 -12.74 2.57 -175.23 -0.45 -13.19 16 10 C 0.12 2.13 5.97 -4.04 -0.02 2.11 16 11 C -0.17 -2.44 10.24 37.16 0.38 -2.06 16 12 C 0.22 5.63 4.29 -5.19 -0.02 5.61 16 13 C -0.52 -15.17 9.94 -34.44 -0.34 -15.51 16 14 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 17 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 21 N -0.58 -13.01 9.10 -11.62 -0.11 -13.11 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 26 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16 27 H 0.40 6.46 8.60 -40.82 -0.35 6.11 16 28 H 0.12 1.58 6.69 -52.49 -0.35 1.23 16 29 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.12 1.92 6.00 -52.49 -0.32 1.60 16 31 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 32 H 0.07 1.08 5.96 -51.93 -0.31 0.77 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.02 0.54 7.13 -51.93 -0.37 0.17 16 37 H 0.04 1.06 6.72 -51.93 -0.35 0.71 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 313.19 15.07 4.72 4.72 Total: -1.00 -33.29 313.19 -9.13 -42.42 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.84 Total: 4.70 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.21 Total: -3.46 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.13 Total: -65.63 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.29 -9.13 -42.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087823847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.356 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds