Wall clock time and date at job start Mon Mar 30 2020 06:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46508 * 109.46971 * 2 1 4 4 C 1.38987 * 119.99707 * 179.97438 * 3 2 1 5 5 C 1.39007 * 119.66241 * 0.02562 * 4 3 2 6 6 C 1.38513 * 119.25922 * 180.02562 * 5 4 3 7 7 C 1.38547 * 118.58923 * 0.27828 * 6 5 4 8 8 C 1.38966 * 119.26154 * 359.45262 * 7 6 5 9 9 N 1.38993 * 119.65868 * 180.27997 * 8 7 6 10 10 C 1.46495 * 120.00296 * 5.27501 * 9 8 7 11 11 C 1.53004 * 109.47137 * 90.00222 * 10 9 8 12 12 C 1.46501 * 120.00015 * 185.27589 * 9 8 7 13 13 C 1.50708 * 109.47098 * 89.99855 * 12 9 8 14 14 H 1.07993 * 119.99670 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00022 * 180.02562 * 13 12 9 16 16 N 1.31509 * 120.00016 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00160 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47101 * 90.00014 * 17 15 13 19 19 H 1.48495 * 109.47209 * 210.00379 * 17 15 13 20 20 H 1.48506 * 109.47202 * 330.00145 * 17 15 13 21 21 N 1.32468 * 119.66036 * 180.02562 * 4 3 2 22 22 H 1.09002 * 109.46719 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47108 * 300.00310 * 1 2 3 24 24 H 1.09002 * 109.46736 * 59.99897 * 1 2 3 25 25 H 1.09001 * 109.47386 * 240.00297 * 2 1 3 26 26 H 1.09002 * 109.47159 * 119.99774 * 2 1 3 27 27 H 0.96994 * 119.99710 * 0.02562 * 3 2 1 28 28 H 1.07996 * 120.36937 * 0.04391 * 5 4 3 29 29 H 1.08002 * 120.70160 * 179.97438 * 6 5 4 30 30 H 1.07998 * 120.37154 * 179.72784 * 7 6 5 31 31 H 1.09004 * 109.47619 * 209.99794 * 10 9 8 32 32 H 1.08999 * 109.47129 * 330.00695 * 10 9 8 33 33 H 1.08994 * 109.47411 * 60.00086 * 11 10 9 34 34 H 1.08999 * 109.47172 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.47234 * 300.00096 * 11 10 9 36 36 H 1.09002 * 109.47303 * 209.99998 * 12 9 8 37 37 H 1.08999 * 109.47307 * 330.00152 * 12 9 8 38 38 H 0.96998 * 120.00501 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3849 1.6352 0.0005 5 6 4.2819 0.5733 0.0005 6 6 5.6419 0.8360 0.0016 7 6 6.0622 2.1562 0.0086 8 6 5.1131 3.1712 0.0026 9 7 5.5255 4.4985 0.0037 10 6 6.9499 4.8231 -0.1057 11 6 7.3267 4.9742 -1.5809 12 6 4.5359 5.5730 0.1141 13 6 4.3138 5.9040 1.5676 14 1 4.8559 5.3678 2.3323 15 6 3.4185 6.8912 1.9208 16 7 3.2250 7.1803 3.1890 17 14 2.4812 7.8191 0.5979 18 1 1.2073 7.1137 0.3066 19 1 2.1878 9.1953 1.0721 20 1 3.3036 7.8858 -0.6369 21 7 3.8190 2.8867 0.0010 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.3880 2.1185 0.0004 28 1 3.9224 -0.4450 -0.0006 29 1 6.3594 0.0288 0.0021 30 1 7.1157 2.3938 0.0140 31 1 7.1510 5.7576 0.4181 32 1 7.5402 4.0224 0.3398 33 1 6.7365 5.7748 -2.0266 34 1 8.3866 5.2152 -1.6623 35 1 7.1257 4.0397 -2.1049 36 1 4.9001 6.4576 -0.4084 37 1 3.5959 5.2486 -0.3323 38 1 2.5949 7.8745 3.4377 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087823847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:17 Heat of formation + Delta-G solvation = 27.967471 kcal Electronic energy + Delta-G solvation = -18246.015982 eV Core-core repulsion = 15508.811485 eV Total energy + Delta-G solvation = -2737.204497 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.05753 -38.40474 -36.51079 -34.78769 -33.34834 -32.17443 -31.44148 -29.68510 -28.07586 -24.85695 -24.77968 -23.40756 -22.89386 -21.10962 -19.03977 -18.56270 -17.89406 -16.57544 -16.40853 -16.28593 -16.10769 -15.87523 -15.21943 -14.79959 -14.62132 -14.31159 -14.03568 -13.65302 -13.48213 -13.13074 -13.09446 -12.87234 -12.57272 -12.55904 -12.42525 -12.26728 -12.03205 -11.76596 -11.71955 -11.09928 -10.80563 -10.70030 -10.04783 -8.99885 -8.31166 -8.00031 -6.33552 0.83149 0.85753 1.31979 1.34614 1.44679 2.16366 2.32189 2.62103 3.03776 3.30420 3.95558 4.14193 4.18012 4.27652 4.41210 4.44981 4.49274 4.51371 4.54621 4.66041 4.77872 4.87284 4.96520 4.98682 5.04463 5.08097 5.08935 5.24901 5.28362 5.37934 5.52530 5.64470 5.76718 6.05030 6.23376 6.50672 6.66991 6.74757 6.84717 7.29513 7.70451 8.86715 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.008111 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.149135 B = 3451.329220 C = 4781.803433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 N -0.735 5.735 4 C 0.420 3.580 5 C -0.311 4.311 6 C 0.003 3.997 7 C -0.315 4.315 8 C 0.432 3.568 9 N -0.602 5.602 10 C 0.117 3.883 11 C -0.155 4.155 12 C 0.242 3.758 13 C -0.522 4.522 14 H 0.020 0.980 15 C 0.010 3.990 16 N -0.950 5.950 17 Si 0.950 3.050 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.246 1.246 21 N -0.630 5.630 22 H 0.096 0.904 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.395 0.605 28 H 0.147 0.853 29 H 0.164 0.836 30 H 0.141 0.859 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.030 0.970 37 H 0.026 0.974 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 -14.284 -10.820 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 N -0.368 5.368 4 C 0.182 3.818 5 C -0.338 4.338 6 C -0.022 4.022 7 C -0.342 4.342 8 C 0.196 3.804 9 N -0.312 5.312 10 C -0.005 4.005 11 C -0.214 4.214 12 C 0.119 3.881 13 C -0.561 4.561 14 H 0.039 0.961 15 C -0.187 4.187 16 N -0.591 5.591 17 Si 0.773 3.227 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.170 1.170 21 N -0.358 5.358 22 H 0.115 0.885 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.229 0.771 28 H 0.164 0.836 29 H 0.181 0.819 30 H 0.159 0.841 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.208 -13.528 -10.714 17.299 hybrid contribution -0.391 0.561 0.275 0.737 sum 0.817 -12.967 -10.439 16.667 Atomic orbital electron populations 1.21954 0.93071 1.04191 1.02339 1.21473 0.95578 0.80963 1.01763 1.44794 1.02176 1.08826 1.81055 1.18409 0.86464 0.88201 0.88718 1.21232 0.93492 0.98698 1.20406 1.21343 0.95349 0.95811 0.89747 1.21312 0.99731 0.92774 1.20339 1.18300 0.88033 0.85919 0.88166 1.46726 1.06944 1.02018 1.75542 1.21550 0.79553 1.01571 0.97854 1.22111 1.02388 1.01642 0.95224 1.19138 0.88827 0.85872 0.94304 1.21600 1.23556 1.18443 0.92502 0.96122 1.25812 0.97389 0.97808 0.97697 1.70066 1.37447 1.33281 1.18313 0.85689 0.79453 0.77749 0.79823 1.19711 1.20304 1.16958 1.66455 1.17481 1.22210 1.29626 0.88480 0.92750 0.92071 0.91039 0.91895 0.77064 0.83579 0.81873 0.84087 0.91536 0.89558 0.93768 0.89003 0.92674 0.95190 0.95557 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.03 71.98 0.72 -1.85 16 2 C 0.13 2.61 5.61 86.38 0.48 3.10 16 3 N -0.74 -22.85 5.73 -345.12 -1.98 -24.82 16 4 C 0.42 15.72 7.65 133.02 1.02 16.74 16 5 C -0.31 -9.51 9.32 22.52 0.21 -9.30 16 6 C 0.00 0.08 10.16 22.41 0.23 0.31 16 7 C -0.31 -10.84 9.27 22.52 0.21 -10.63 16 8 C 0.43 18.70 7.37 133.00 0.98 19.68 16 9 N -0.60 -26.71 2.57 -708.31 -1.82 -28.53 16 10 C 0.12 4.05 5.97 86.38 0.52 4.57 16 11 C -0.16 -4.23 10.24 71.98 0.74 -3.49 16 12 C 0.24 12.40 4.29 85.64 0.37 12.77 16 13 C -0.52 -31.85 9.94 25.60 0.25 -31.60 16 14 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16 15 C 0.01 0.60 5.47 84.65 0.46 1.07 16 16 N -0.95 -61.60 13.96 21.45 0.30 -61.30 16 17 Si 0.95 45.98 27.47 68.60 1.88 47.86 16 18 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 20 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 21 N -0.63 -28.73 9.10 -190.69 -1.74 -30.46 16 22 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.30 7.92 -2.39 -0.02 1.28 16 26 H 0.06 1.26 7.92 -2.39 -0.02 1.24 16 27 H 0.40 12.95 8.60 -92.71 -0.80 12.15 16 28 H 0.15 3.46 6.69 -2.91 -0.02 3.44 16 29 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.14 4.13 6.00 -2.91 -0.02 4.12 16 31 H 0.07 2.43 8.07 -2.38 -0.02 2.41 16 32 H 0.09 2.61 5.96 -2.39 -0.01 2.60 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.03 1.48 7.13 -2.39 -0.02 1.46 16 37 H 0.03 1.42 6.72 -2.39 -0.02 1.40 16 38 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -76.13 313.19 3.03 -73.10 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.19 Total: 22.80 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 6.19 Total: 1.36 kcal Atomic # 7 Polarization: -139.88 SS G_CDS: -5.23 Total: -145.12 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Total: -76.13 3.03 -73.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087823847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.072 kcal (2) G-P(sol) polarization free energy of solvation -76.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds