Wall clock time and date at job start Mon Mar 30 2020 06:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38993 * 119.99866 * 2 1 4 4 C 1.38995 * 119.66084 * 0.02562 * 3 2 1 5 5 C 1.38514 * 119.26010 * 179.97438 * 4 3 2 6 6 C 1.38551 * 118.58640 * 359.74957 * 5 4 3 7 7 C 1.38965 * 119.26431 * 0.47600 * 6 5 4 8 8 N 1.38989 * 119.65910 * 179.79592 * 7 6 5 9 9 C 1.46503 * 119.99819 * 170.12364 * 8 7 6 10 10 C 1.50700 * 109.47045 * 269.99291 * 9 8 7 11 11 H 1.07997 * 119.99989 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00103 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99642 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99981 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47357 * 60.00507 * 14 12 10 16 16 H 1.48498 * 109.47405 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47193 * 300.00477 * 14 12 10 18 18 C 1.46499 * 120.00495 * 350.11744 * 8 7 6 19 19 C 1.53005 * 109.47234 * 234.42309 * 18 8 7 20 20 C 1.52992 * 109.47098 * 114.41915 * 18 8 7 21 21 N 1.32470 * 119.65366 * 180.02562 * 3 2 1 22 22 H 1.09000 * 109.46922 * 299.99666 * 1 2 3 23 23 H 1.08995 * 109.46852 * 59.99460 * 1 2 3 24 24 H 1.09003 * 109.47141 * 179.97438 * 1 2 3 25 25 H 0.96999 * 119.99713 * 180.02562 * 2 1 3 26 26 H 1.08000 * 120.36993 * 359.97438 * 4 3 2 27 27 H 1.07999 * 120.70472 * 180.02562 * 5 4 3 28 28 H 1.07999 * 120.37209 * 180.26624 * 6 5 4 29 29 H 1.08999 * 109.47258 * 29.99274 * 9 8 7 30 30 H 1.09004 * 109.47146 * 149.99485 * 9 8 7 31 31 H 0.97005 * 119.99443 * 179.97438 * 13 12 10 32 32 H 1.09010 * 109.46783 * 354.42039 * 18 8 7 33 33 H 1.08996 * 109.46760 * 296.42866 * 19 18 8 34 34 H 1.08995 * 109.47018 * 56.43060 * 19 18 8 35 35 H 1.09002 * 109.46929 * 176.42562 * 19 18 8 36 36 H 1.09007 * 109.46777 * 183.58367 * 20 18 8 37 37 H 1.08994 * 109.47294 * 303.57744 * 20 18 8 38 38 H 1.09000 * 109.47630 * 63.58337 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2037 0.0000 4 6 1.4579 2.4033 0.0005 5 6 2.1588 3.5980 0.0011 6 6 3.5436 3.5542 0.0064 7 6 4.1842 2.3210 0.0009 8 7 5.5731 2.2675 0.0018 9 6 6.2567 0.9892 0.2138 10 6 6.4994 0.7877 1.6874 11 1 6.1764 1.5366 2.3953 12 6 7.1330 -0.3534 2.1320 13 7 7.5259 -1.2656 1.2700 14 14 7.4332 -0.6035 3.9587 15 1 6.1337 -0.6116 4.6774 16 1 8.1262 -1.8991 4.1736 17 1 8.2788 0.5017 4.4773 18 6 6.3535 3.4893 -0.2092 19 6 7.3287 3.2776 -1.3691 20 6 7.1373 3.8198 1.0624 21 7 3.4847 1.1958 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9500 -0.8401 -0.0004 26 1 0.3779 2.4039 0.0005 27 1 1.6369 4.5436 0.0019 28 1 4.1188 4.4682 0.0113 29 1 5.6361 0.1779 -0.1665 30 1 7.2104 0.9953 -0.3140 31 1 7.9720 -2.0682 1.5829 32 1 5.6807 4.3137 -0.4460 33 1 8.0414 2.4959 -1.1064 34 1 6.7750 2.9802 -2.2596 35 1 7.8643 4.2060 -1.5674 36 1 7.6678 4.7624 0.9274 37 1 6.4476 3.9080 1.9017 38 1 7.8550 3.0246 1.2639 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087824257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:18 Heat of formation + Delta-G solvation = 50.577515 kcal Electronic energy + Delta-G solvation = -18585.391399 eV Core-core repulsion = 15849.167347 eV Total energy + Delta-G solvation = -2736.224052 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.60127 -37.16958 -34.90062 -32.80835 -31.96974 -30.69646 -28.76331 -26.66259 -26.39874 -25.79529 -23.16854 -21.83641 -21.43420 -18.98497 -17.32625 -16.60848 -16.20792 -15.15193 -15.01600 -14.57680 -14.32321 -14.09534 -13.61659 -13.30116 -13.15365 -12.51194 -12.40329 -12.22384 -11.99846 -11.63975 -11.50851 -11.40777 -11.02382 -10.93643 -10.75349 -10.41777 -10.19828 -10.05377 -9.78371 -9.53736 -9.08554 -8.49818 -8.31393 -7.54225 -6.52062 -5.91235 -3.97365 2.22866 2.30979 3.34780 3.38849 3.42241 3.53971 4.12067 4.50363 4.77512 5.25132 5.32313 5.37477 5.43558 5.58270 5.69083 5.72722 5.74605 5.83972 5.86598 6.05005 6.10095 6.11784 6.27325 6.38772 6.48660 6.59372 6.73255 6.96786 6.99686 7.09026 7.23737 7.54210 7.71429 7.90620 8.03882 8.25518 8.40058 8.53349 9.04887 9.22966 9.65601 11.12355 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.008456 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.490851 B = 3310.648220 C = 4414.372557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.737 5.737 3 C 0.443 3.557 4 C -0.321 4.321 5 C -0.004 4.004 6 C -0.314 4.314 7 C 0.465 3.535 8 N -0.585 5.585 9 C 0.253 3.747 10 C -0.513 4.513 11 H 0.055 0.945 12 C 0.060 3.940 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.148 3.852 19 C -0.160 4.160 20 C -0.157 4.157 21 N -0.579 5.579 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.404 0.596 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.048 0.952 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.054 7.755 -3.965 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.371 5.371 3 C 0.205 3.795 4 C -0.349 4.349 5 C -0.029 4.029 6 C -0.341 4.341 7 C 0.226 3.774 8 N -0.293 5.293 9 C 0.133 3.867 10 C -0.553 4.553 11 H 0.073 0.927 12 C -0.141 4.141 13 N -0.537 5.537 14 Si 0.719 3.281 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.204 1.204 18 C 0.043 3.957 19 C -0.218 4.218 20 C -0.215 4.215 21 N -0.305 5.305 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.239 0.761 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.480 6.825 -3.982 11.590 hybrid contribution -0.090 0.144 1.175 1.187 sum -8.569 6.969 -2.806 11.396 Atomic orbital electron populations 1.21434 0.79861 1.01890 1.00843 1.44210 1.05144 1.05769 1.81948 1.17949 0.87532 0.85814 0.88253 1.20812 0.99439 0.91925 1.22685 1.20804 0.93229 0.96955 0.91941 1.21095 0.94912 0.97145 1.20939 1.17910 0.85352 0.87574 0.86516 1.47174 1.00401 1.09781 1.71976 1.19221 0.92085 0.79365 0.95993 1.21491 1.36887 1.04199 0.92685 0.92676 1.24899 0.96020 0.95834 0.97394 1.69930 1.40595 1.09488 1.33664 0.86676 0.78263 0.77199 0.85937 1.20451 1.21361 1.20391 1.20908 0.92705 0.87041 0.95001 1.22157 0.99814 1.01850 0.98005 1.22173 1.00990 1.00902 0.97458 1.66596 1.05617 1.30429 1.27856 0.93162 0.93207 0.91072 0.76146 0.86757 0.86417 0.86165 0.93445 0.95378 0.92954 0.90529 0.91345 0.92887 0.92426 0.93437 0.92771 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.17 9.92 59.85 0.59 1.76 16 2 N -0.74 -11.75 5.89 -67.23 -0.40 -12.14 16 3 C 0.44 8.52 7.65 -155.02 -1.19 7.34 16 4 C -0.32 -5.40 9.32 -39.20 -0.37 -5.76 16 5 C 0.00 -0.06 10.16 -39.36 -0.40 -0.46 16 6 C -0.31 -5.77 9.25 -39.20 -0.36 -6.13 16 7 C 0.47 10.16 7.34 -155.01 -1.14 9.02 16 8 N -0.58 -12.91 2.50 -167.64 -0.42 -13.33 16 9 C 0.25 6.60 4.86 -5.19 -0.03 6.58 16 10 C -0.51 -14.41 7.97 -34.44 -0.27 -14.69 16 11 H 0.06 1.58 7.59 -52.49 -0.40 1.18 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 14 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 C 0.15 2.66 3.11 -67.93 -0.21 2.45 16 19 C -0.16 -2.61 8.96 37.16 0.33 -2.27 16 20 C -0.16 -2.79 8.51 37.15 0.32 -2.47 16 21 N -0.58 -13.17 9.10 -11.62 -0.11 -13.28 16 22 H 0.05 0.54 7.92 -51.93 -0.41 0.13 16 23 H 0.05 0.51 7.92 -51.93 -0.41 0.10 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.40 6.52 8.95 -40.82 -0.37 6.15 16 26 H 0.11 1.60 6.69 -52.49 -0.35 1.25 16 27 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.12 1.96 5.93 -52.49 -0.31 1.65 16 29 H 0.05 1.38 7.25 -51.93 -0.38 1.01 16 30 H 0.03 0.76 6.23 -51.93 -0.32 0.43 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.08 1.22 5.47 -51.92 -0.28 0.94 16 33 H 0.07 1.24 6.68 -51.93 -0.35 0.90 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.57 7.18 -51.93 -0.37 1.20 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -31.63 309.01 -8.99 -40.62 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.62 Total: 5.29 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.82 Total: -3.03 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -0.18 Total: -64.61 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.63 -8.99 -40.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087824257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.200 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds