Wall clock time and date at job start Mon Mar 30 2020 06:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38993 * 119.99866 * 2 1 4 4 C 1.38995 * 119.66084 * 0.02562 * 3 2 1 5 5 C 1.38514 * 119.26010 * 179.97438 * 4 3 2 6 6 C 1.38551 * 118.58640 * 359.74957 * 5 4 3 7 7 C 1.38965 * 119.26431 * 0.47600 * 6 5 4 8 8 N 1.38989 * 119.65910 * 179.79592 * 7 6 5 9 9 C 1.46503 * 119.99819 * 170.12364 * 8 7 6 10 10 C 1.50700 * 109.47045 * 269.99291 * 9 8 7 11 11 H 1.07997 * 119.99989 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00103 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99642 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99981 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47357 * 60.00507 * 14 12 10 16 16 H 1.48498 * 109.47405 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47193 * 300.00477 * 14 12 10 18 18 C 1.46499 * 120.00495 * 350.11744 * 8 7 6 19 19 C 1.53005 * 109.47234 * 234.42309 * 18 8 7 20 20 C 1.52992 * 109.47098 * 114.41915 * 18 8 7 21 21 N 1.32470 * 119.65366 * 180.02562 * 3 2 1 22 22 H 1.09000 * 109.46922 * 299.99666 * 1 2 3 23 23 H 1.08995 * 109.46852 * 59.99460 * 1 2 3 24 24 H 1.09003 * 109.47141 * 179.97438 * 1 2 3 25 25 H 0.96999 * 119.99713 * 180.02562 * 2 1 3 26 26 H 1.08000 * 120.36993 * 359.97438 * 4 3 2 27 27 H 1.07999 * 120.70472 * 180.02562 * 5 4 3 28 28 H 1.07999 * 120.37209 * 180.26624 * 6 5 4 29 29 H 1.08999 * 109.47258 * 29.99274 * 9 8 7 30 30 H 1.09004 * 109.47146 * 149.99485 * 9 8 7 31 31 H 0.97005 * 119.99443 * 179.97438 * 13 12 10 32 32 H 1.09010 * 109.46783 * 354.42039 * 18 8 7 33 33 H 1.08996 * 109.46760 * 296.42866 * 19 18 8 34 34 H 1.08995 * 109.47018 * 56.43060 * 19 18 8 35 35 H 1.09002 * 109.46929 * 176.42562 * 19 18 8 36 36 H 1.09007 * 109.46777 * 183.58367 * 20 18 8 37 37 H 1.08994 * 109.47294 * 303.57744 * 20 18 8 38 38 H 1.09000 * 109.47630 * 63.58337 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2037 0.0000 4 6 1.4579 2.4033 0.0005 5 6 2.1588 3.5980 0.0011 6 6 3.5436 3.5542 0.0064 7 6 4.1842 2.3210 0.0009 8 7 5.5731 2.2675 0.0018 9 6 6.2567 0.9892 0.2138 10 6 6.4994 0.7877 1.6874 11 1 6.1764 1.5366 2.3953 12 6 7.1330 -0.3534 2.1320 13 7 7.5259 -1.2656 1.2700 14 14 7.4332 -0.6035 3.9587 15 1 6.1337 -0.6116 4.6774 16 1 8.1262 -1.8991 4.1736 17 1 8.2788 0.5017 4.4773 18 6 6.3535 3.4893 -0.2092 19 6 7.3287 3.2776 -1.3691 20 6 7.1373 3.8198 1.0624 21 7 3.4847 1.1958 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9500 -0.8401 -0.0004 26 1 0.3779 2.4039 0.0005 27 1 1.6369 4.5436 0.0019 28 1 4.1188 4.4682 0.0113 29 1 5.6361 0.1779 -0.1665 30 1 7.2104 0.9953 -0.3140 31 1 7.9720 -2.0682 1.5829 32 1 5.6807 4.3137 -0.4460 33 1 8.0414 2.4959 -1.1064 34 1 6.7750 2.9802 -2.2596 35 1 7.8643 4.2060 -1.5674 36 1 7.6678 4.7624 0.9274 37 1 6.4476 3.9080 1.9017 38 1 7.8550 3.0246 1.2639 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087824257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:17 Heat of formation + Delta-G solvation = 31.377557 kcal Electronic energy + Delta-G solvation = -18586.223972 eV Core-core repulsion = 15849.167347 eV Total energy + Delta-G solvation = -2737.056625 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.04281 -38.65478 -36.17799 -34.86871 -33.47324 -32.14384 -30.47373 -28.22695 -27.92649 -26.95013 -25.02181 -23.23876 -22.96507 -20.47361 -18.69157 -18.53447 -17.92478 -16.70254 -16.49322 -16.19765 -15.72972 -15.51287 -14.95937 -14.75257 -14.60307 -14.12690 -13.81731 -13.76166 -13.29002 -13.17981 -12.97342 -12.83720 -12.73020 -12.64488 -12.33265 -12.26312 -12.06724 -11.61952 -11.38374 -11.14093 -10.66819 -10.55436 -9.96947 -8.99160 -8.26103 -7.85134 -6.23907 0.85447 0.89136 1.34815 1.37331 1.44908 2.22407 2.40608 2.72022 3.15164 3.33209 3.93098 4.13130 4.31730 4.37201 4.41416 4.46908 4.55189 4.71599 4.73581 4.78206 4.84839 4.90981 4.94509 5.02260 5.05146 5.21161 5.29646 5.34209 5.48586 5.56158 5.67181 5.74529 5.83347 6.18081 6.27534 6.46260 6.76612 6.84619 6.97396 7.42862 7.77033 8.92810 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.008456 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.490851 B = 3310.648220 C = 4414.372557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.741 5.741 3 C 0.417 3.583 4 C -0.313 4.313 5 C 0.003 3.997 6 C -0.318 4.318 7 C 0.432 3.568 8 N -0.599 5.599 9 C 0.278 3.722 10 C -0.517 4.517 11 H 0.045 0.955 12 C 0.008 3.992 13 N -0.930 5.930 14 Si 0.955 3.045 15 H -0.280 1.280 16 H -0.280 1.280 17 H -0.266 1.266 18 C 0.142 3.858 19 C -0.152 4.152 20 C -0.148 4.148 21 N -0.631 5.631 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.095 0.905 25 H 0.397 0.603 26 H 0.147 0.853 27 H 0.164 0.836 28 H 0.141 0.859 29 H 0.006 0.994 30 H 0.010 0.990 31 H 0.263 0.737 32 H 0.105 0.895 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.739 9.954 -3.480 15.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.374 5.374 3 C 0.179 3.821 4 C -0.340 4.340 5 C -0.022 4.022 6 C -0.344 4.344 7 C 0.195 3.805 8 N -0.310 5.310 9 C 0.156 3.844 10 C -0.556 4.556 11 H 0.063 0.937 12 C -0.190 4.190 13 N -0.571 5.571 14 Si 0.780 3.220 15 H -0.206 1.206 16 H -0.205 1.205 17 H -0.191 1.191 18 C 0.039 3.961 19 C -0.210 4.210 20 C -0.206 4.206 21 N -0.359 5.359 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.114 0.886 25 H 0.230 0.770 26 H 0.165 0.835 27 H 0.181 0.819 28 H 0.159 0.841 29 H 0.024 0.976 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.220 9.044 -3.503 14.089 hybrid contribution 0.285 -0.539 0.970 1.146 sum -9.935 8.505 -2.533 13.321 Atomic orbital electron populations 1.21717 0.76940 1.03988 1.01684 1.44538 1.06954 1.04662 1.81219 1.18471 0.86945 0.87854 0.88783 1.21218 1.01039 0.91123 1.20627 1.21335 0.92447 0.98659 0.89784 1.21326 0.96147 0.96307 1.20641 1.18370 0.85173 0.88895 0.88067 1.47081 1.01072 1.09305 1.73498 1.18540 0.90572 0.80792 0.94479 1.21670 1.36416 1.03952 0.93546 0.93655 1.25714 0.95885 0.95605 1.01819 1.70054 1.41402 1.09964 1.35633 0.85665 0.78078 0.77649 0.80558 1.20614 1.20533 1.19125 1.21211 0.93162 0.86281 0.95459 1.22096 0.99036 1.02767 0.97144 1.22080 1.00037 1.01573 0.96943 1.66524 1.07798 1.32024 1.29520 0.92404 0.91928 0.88599 0.76987 0.83537 0.81873 0.84093 0.97636 0.97183 0.92852 0.87706 0.94242 0.93336 0.88567 0.89421 0.94179 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.00 9.92 127.77 1.27 3.26 16 2 N -0.74 -23.37 5.89 -366.61 -2.16 -25.53 16 3 C 0.42 15.93 7.65 133.01 1.02 16.95 16 4 C -0.31 -9.67 9.32 22.52 0.21 -9.46 16 5 C 0.00 0.09 10.16 22.41 0.23 0.32 16 6 C -0.32 -11.06 9.25 22.52 0.21 -10.85 16 7 C 0.43 19.09 7.34 133.00 0.98 20.06 16 8 N -0.60 -27.26 2.50 -684.30 -1.71 -28.97 16 9 C 0.28 15.38 4.86 85.63 0.42 15.80 16 10 C -0.52 -30.22 7.97 25.60 0.20 -30.02 16 11 H 0.05 2.68 7.59 -2.91 -0.02 2.66 16 12 C 0.01 0.45 5.46 84.66 0.46 0.91 16 13 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 14 Si 0.95 46.23 29.54 68.60 2.03 48.26 16 15 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 C 0.14 5.03 3.11 44.99 0.14 5.17 16 19 C -0.15 -4.92 8.96 71.98 0.65 -4.27 16 20 C -0.15 -5.18 8.51 71.98 0.61 -4.56 16 21 N -0.63 -29.61 9.10 -190.69 -1.74 -31.35 16 22 H 0.06 1.08 7.92 -2.39 -0.02 1.06 16 23 H 0.06 1.10 7.92 -2.39 -0.02 1.08 16 24 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.40 13.21 8.95 -92.71 -0.83 12.38 16 26 H 0.15 3.49 6.69 -2.91 -0.02 3.47 16 27 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 28 H 0.14 4.16 5.93 -2.91 -0.02 4.15 16 29 H 0.01 0.35 7.25 -2.39 -0.02 0.33 16 30 H 0.01 0.59 6.23 -2.38 -0.01 0.58 16 31 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 32 H 0.11 3.10 5.47 -2.38 -0.01 3.08 16 33 H 0.04 1.48 6.68 -2.39 -0.02 1.46 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.73 7.18 -2.39 -0.02 1.71 16 Total: -1.00 -72.69 309.01 3.32 -69.38 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.22 Total: 21.81 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 6.39 Total: 3.30 kcal Atomic # 7 Polarization: -137.43 SS G_CDS: -5.32 Total: -142.75 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -72.69 3.32 -69.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087824257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.756 kcal (2) G-P(sol) polarization free energy of solvation -72.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds