Wall clock time and date at job start Mon Mar 30 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46847 * 111.00348 * 66.04891 * 11 10 9 13 13 C 1.53032 * 109.52354 * 174.16174 * 12 11 10 14 14 C 1.53116 * 109.28153 * 59.18124 * 13 12 11 15 15 C 1.53126 * 109.15896 * 302.34327 * 14 13 12 16 16 C 1.46849 * 110.99963 * 301.83609 * 11 10 9 17 17 H 1.08999 * 109.46386 * 65.82541 * 16 11 10 18 18 C 1.50699 * 109.46460 * 305.85630 * 16 11 10 19 19 C 1.39878 * 126.04026 * 320.02850 * 18 16 11 20 20 N 1.30834 * 108.20162 * 179.97438 * 19 18 16 21 21 N 1.40080 * 108.20769 * 359.97438 * 20 19 18 22 22 H 0.96998 * 126.04059 * 179.97438 * 21 20 19 23 23 C 1.34951 * 107.92308 * 359.76036 * 21 20 19 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.09003 * 109.45935 * 294.17813 * 12 11 10 30 30 H 1.08996 * 109.46169 * 54.13678 * 12 11 10 31 31 H 1.09011 * 109.49984 * 179.11773 * 13 12 11 32 32 H 1.08996 * 109.50357 * 299.23314 * 13 12 11 33 33 H 1.09001 * 109.52538 * 62.24814 * 14 13 12 34 34 H 1.08998 * 109.52633 * 182.37779 * 14 13 12 35 35 H 1.08997 * 109.50286 * 177.59600 * 15 14 13 36 36 H 1.09000 * 109.49894 * 297.71349 * 15 14 13 37 37 H 1.07998 * 125.89255 * 359.94786 * 19 18 16 38 38 H 1.08009 * 126.12347 * 180.24342 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 0.7662 -5.1114 -1.2532 13 6 0.1338 -6.5047 -1.2798 14 6 -0.8056 -6.6565 -0.0802 15 6 -0.0156 -6.4196 1.2099 16 6 0.6211 -5.0287 1.1643 17 1 -0.1611 -4.2737 1.0859 18 6 1.4160 -4.7989 2.4238 19 6 2.7035 -5.2801 2.6837 20 7 3.0583 -4.8747 3.8760 21 7 2.0066 -4.1211 4.4130 22 1 1.9957 -3.6974 5.2855 23 6 1.0133 -4.0849 3.5003 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8906 29 1 -0.0167 -4.3559 -1.3204 30 1 1.4465 -5.0051 -2.0981 31 1 -0.4318 -6.6301 -2.2031 32 1 0.9171 -7.2609 -1.2266 33 1 -1.6111 -5.9258 -0.1536 34 1 -1.2259 -7.6622 -0.0716 35 1 -0.6880 -6.4842 2.0654 36 1 0.7652 -7.1745 1.3022 37 1 3.3010 -5.8826 2.0157 38 1 0.0654 -3.5790 3.6105 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114482849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:17 Heat of formation + Delta-G solvation = 59.485868 kcal Electronic energy + Delta-G solvation = -18967.137863 eV Core-core repulsion = 16231.300106 eV Total energy + Delta-G solvation = -2735.837757 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.97207 -38.61385 -34.33298 -32.62033 -31.99428 -30.85860 -28.73467 -28.14347 -24.73469 -22.95787 -22.84105 -21.72922 -20.84439 -19.83999 -18.92020 -17.22383 -16.70257 -15.18543 -14.84949 -14.33140 -14.12393 -13.94462 -13.74298 -13.54114 -13.43861 -13.01714 -12.54768 -12.15082 -11.93070 -11.77074 -11.52748 -11.00875 -10.81748 -10.62521 -10.55599 -10.27993 -10.11841 -10.07370 -9.99478 -9.76446 -9.22962 -8.58052 -8.30292 -8.08561 -7.50482 -6.35075 -4.03045 2.24454 3.15438 3.23469 3.43120 3.44715 3.63290 4.46827 4.57115 5.04475 5.13062 5.22410 5.28730 5.31154 5.41649 5.59164 5.74955 5.81260 5.90209 5.98089 6.02805 6.10701 6.14127 6.20764 6.29394 6.37790 6.44119 6.48417 6.57610 6.71855 6.89514 6.98849 7.38661 7.43052 7.56515 7.70050 7.82143 8.01104 8.29064 8.47802 8.90427 9.68327 11.05024 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.008130 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.144437 B = 3443.092063 C = 4444.244783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.066 2.934 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.594 4.594 8 H 0.046 0.954 9 C -0.017 4.017 10 C 0.066 3.934 11 N -0.533 5.533 12 C 0.054 3.946 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.104 4.104 16 C 0.162 3.838 17 H 0.049 0.951 18 C -0.213 4.213 19 C 0.077 3.923 20 N -0.309 5.309 21 N -0.482 5.482 22 H 0.435 0.565 23 C 0.064 3.936 24 H 0.266 0.734 25 H 0.009 0.991 26 H 0.004 0.996 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.181 0.819 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 -12.365 3.736 12.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.189 4.189 3 Si 0.894 3.106 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.633 4.633 8 H 0.065 0.935 9 C -0.055 4.055 10 C -0.061 4.061 11 N -0.257 5.257 12 C -0.074 4.074 13 C -0.152 4.152 14 C -0.159 4.159 15 C -0.142 4.142 16 C 0.052 3.948 17 H 0.067 0.933 18 C -0.225 4.225 19 C -0.110 4.110 20 N -0.131 5.131 21 N -0.190 5.190 22 H 0.278 0.722 23 C -0.084 4.084 24 H 0.077 0.923 25 H 0.028 0.972 26 H 0.022 0.978 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.198 0.802 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.253 -11.123 4.630 12.051 hybrid contribution -1.057 -0.533 -0.293 1.219 sum -0.804 -11.657 4.336 12.463 Atomic orbital electron populations 1.70797 1.06836 1.30343 1.47129 1.25794 0.96560 1.02601 0.93925 0.83590 0.74935 0.75529 0.76530 1.20814 1.21578 1.21427 1.21981 0.94171 0.92029 1.55114 0.93537 1.19723 0.95599 0.94506 0.95705 1.22158 0.96628 0.86239 1.01040 1.62262 1.27004 1.35476 1.00947 1.22014 0.96917 0.95765 0.92677 1.21586 0.98519 0.97701 0.97442 1.21587 0.98050 1.00902 0.95313 1.21599 0.98811 0.97022 0.96741 1.19734 0.92365 0.95770 0.86917 0.93330 1.19860 0.97443 1.07641 0.97521 1.23665 0.95173 0.98968 0.93239 1.77243 1.10160 1.13498 1.12207 1.46152 1.12390 1.43678 1.16749 0.72199 1.22286 0.95082 1.00163 0.90829 0.92341 0.97245 0.97771 0.92410 0.91453 0.94486 0.91237 0.92226 0.91505 0.92398 0.92348 0.92279 0.91426 0.80194 0.81266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.04 13.65 55.43 0.76 -27.28 16 2 C 0.01 0.42 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 25.73 29.90 -169.99 -5.08 20.65 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.59 -17.10 9.11 -34.44 -0.31 -17.41 16 8 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 9 C -0.02 -0.44 3.58 -27.88 -0.10 -0.54 16 10 C 0.07 1.41 4.82 -3.83 -0.02 1.39 16 11 N -0.53 -9.38 4.48 -228.09 -1.02 -10.41 16 12 C 0.05 0.90 5.05 -3.84 -0.02 0.88 16 13 C -0.11 -1.50 6.09 -26.65 -0.16 -1.66 16 14 C -0.12 -1.52 6.00 -26.61 -0.16 -1.68 16 15 C -0.10 -1.40 5.36 -26.65 -0.14 -1.55 16 16 C 0.16 2.68 1.68 -68.87 -0.12 2.56 16 17 H 0.05 0.92 6.60 -51.93 -0.34 0.58 16 18 C -0.21 -3.53 3.74 -105.05 -0.39 -3.93 16 19 C 0.08 1.27 10.39 -17.36 -0.18 1.09 16 20 N -0.31 -5.19 12.70 30.63 0.39 -4.80 16 21 N -0.48 -7.05 7.36 30.45 0.22 -6.83 16 22 H 0.44 4.86 8.96 -182.61 -1.64 3.22 16 23 C 0.06 0.99 11.90 -17.22 -0.20 0.79 16 24 H 0.27 8.14 7.22 -40.82 -0.29 7.84 16 25 H 0.01 0.25 6.28 -51.93 -0.33 -0.08 16 26 H 0.00 0.11 6.55 -51.93 -0.34 -0.23 16 27 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 28 H 0.07 1.50 6.08 -51.93 -0.32 1.18 16 29 H 0.04 0.69 6.75 -51.93 -0.35 0.34 16 30 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 31 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.18 2.73 8.06 -52.49 -0.42 2.30 16 38 H 0.17 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 299.86 15.07 4.52 4.52 Total: -1.00 -32.16 299.86 -9.15 -41.31 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.03 Total: 2.57 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -1.91 Total: -19.72 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.35 Total: -49.32 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.16 -9.15 -41.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114482849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.795 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds