Wall clock time and date at job start Mon Mar 30 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46847 * 111.00348 * 66.04891 * 11 10 9 13 13 C 1.53032 * 109.52354 * 174.16174 * 12 11 10 14 14 C 1.53116 * 109.28153 * 59.18124 * 13 12 11 15 15 C 1.53126 * 109.15896 * 302.34327 * 14 13 12 16 16 C 1.46849 * 110.99963 * 301.83609 * 11 10 9 17 17 H 1.08999 * 109.46386 * 65.82541 * 16 11 10 18 18 C 1.50699 * 109.46460 * 305.85630 * 16 11 10 19 19 C 1.39878 * 126.04026 * 320.02850 * 18 16 11 20 20 N 1.30834 * 108.20162 * 179.97438 * 19 18 16 21 21 N 1.40080 * 108.20769 * 359.97438 * 20 19 18 22 22 H 0.96998 * 126.04059 * 179.97438 * 21 20 19 23 23 C 1.34951 * 107.92308 * 359.76036 * 21 20 19 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.09003 * 109.45935 * 294.17813 * 12 11 10 30 30 H 1.08996 * 109.46169 * 54.13678 * 12 11 10 31 31 H 1.09011 * 109.49984 * 179.11773 * 13 12 11 32 32 H 1.08996 * 109.50357 * 299.23314 * 13 12 11 33 33 H 1.09001 * 109.52538 * 62.24814 * 14 13 12 34 34 H 1.08998 * 109.52633 * 182.37779 * 14 13 12 35 35 H 1.08997 * 109.50286 * 177.59600 * 15 14 13 36 36 H 1.09000 * 109.49894 * 297.71349 * 15 14 13 37 37 H 1.07998 * 125.89255 * 359.94786 * 19 18 16 38 38 H 1.08009 * 126.12347 * 180.24342 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 0.7662 -5.1114 -1.2532 13 6 0.1338 -6.5047 -1.2798 14 6 -0.8056 -6.6565 -0.0802 15 6 -0.0156 -6.4196 1.2099 16 6 0.6211 -5.0287 1.1643 17 1 -0.1611 -4.2737 1.0859 18 6 1.4160 -4.7989 2.4238 19 6 2.7035 -5.2801 2.6837 20 7 3.0583 -4.8747 3.8760 21 7 2.0066 -4.1211 4.4130 22 1 1.9957 -3.6974 5.2855 23 6 1.0133 -4.0849 3.5003 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8906 29 1 -0.0167 -4.3559 -1.3204 30 1 1.4465 -5.0051 -2.0981 31 1 -0.4318 -6.6301 -2.2031 32 1 0.9171 -7.2609 -1.2266 33 1 -1.6111 -5.9258 -0.1536 34 1 -1.2259 -7.6622 -0.0716 35 1 -0.6880 -6.4842 2.0654 36 1 0.7652 -7.1745 1.3022 37 1 3.3010 -5.8826 2.0157 38 1 0.0654 -3.5790 3.6105 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114482849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:17 Heat of formation + Delta-G solvation = 38.100131 kcal Electronic energy + Delta-G solvation = -18968.065218 eV Core-core repulsion = 16231.300106 eV Total energy + Delta-G solvation = -2736.765112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.23924 -39.97549 -36.12190 -34.36769 -33.30799 -32.11099 -30.49237 -29.46899 -26.51324 -24.73380 -24.16304 -23.02039 -22.40527 -21.04469 -20.27932 -18.91289 -18.45377 -16.61255 -16.27204 -15.71590 -15.61942 -15.35155 -15.20254 -15.01061 -14.84715 -14.75939 -13.87005 -13.63361 -13.53576 -13.36596 -13.04683 -12.66227 -12.37660 -12.27620 -11.97913 -11.91407 -11.56883 -11.55344 -11.27319 -11.23233 -10.72308 -10.56359 -10.47488 -9.35654 -9.10600 -8.68080 -6.39123 0.98986 1.47851 1.55682 1.75265 1.86887 2.09303 2.52497 3.08506 3.14114 3.80631 3.98190 4.07017 4.13830 4.16469 4.31431 4.43147 4.54365 4.58536 4.65171 4.66985 4.77277 4.86385 4.91112 5.02263 5.07826 5.11579 5.13217 5.28884 5.31568 5.39675 5.45793 5.55674 5.71125 5.89460 6.16835 6.26729 6.33680 6.45224 6.60501 6.76499 7.41175 8.70281 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.008130 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.144437 B = 3443.092063 C = 4444.244783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.036 4.036 3 Si 1.112 2.888 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.613 4.613 8 H 0.043 0.957 9 C -0.004 4.004 10 C 0.084 3.916 11 N -0.520 5.520 12 C 0.051 3.949 13 C -0.106 4.106 14 C -0.119 4.119 15 C -0.096 4.096 16 C 0.164 3.836 17 H 0.018 0.982 18 C -0.232 4.232 19 C 0.072 3.928 20 N -0.327 5.327 21 N -0.471 5.471 22 H 0.449 0.551 23 C 0.061 3.939 24 H 0.253 0.747 25 H -0.005 1.005 26 H -0.018 1.018 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.008 0.992 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.191 0.809 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -13.257 3.964 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.233 4.233 3 Si 0.934 3.066 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.651 4.651 8 H 0.061 0.939 9 C -0.043 4.043 10 C -0.044 4.044 11 N -0.244 5.244 12 C -0.078 4.078 13 C -0.144 4.144 14 C -0.157 4.157 15 C -0.134 4.134 16 C 0.054 3.946 17 H 0.036 0.964 18 C -0.244 4.244 19 C -0.115 4.115 20 N -0.150 5.150 21 N -0.181 5.181 22 H 0.295 0.705 23 C -0.088 4.088 24 H 0.063 0.937 25 H 0.013 0.987 26 H 0.000 1.000 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.026 0.974 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.207 0.793 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.679 -12.047 4.873 13.013 hybrid contribution -1.220 -0.263 -0.351 1.297 sum -0.541 -12.310 4.522 13.126 Atomic orbital electron populations 1.70927 1.07767 1.29610 1.48926 1.27300 0.96636 1.06512 0.92871 0.82995 0.74221 0.71495 0.77901 1.20664 1.19801 1.19498 1.22398 0.94320 0.93644 1.54773 0.93867 1.19568 0.95669 0.95234 0.93787 1.21843 0.95737 0.86549 1.00313 1.62319 1.27500 1.32469 1.02062 1.22129 0.96085 0.97506 0.92030 1.21555 0.98941 0.95156 0.98718 1.21607 0.97484 1.02281 0.94329 1.21563 0.99130 0.94784 0.97938 1.19770 0.91347 0.96999 0.86455 0.96389 1.19993 0.97879 1.08631 0.97898 1.23831 0.95173 0.99118 0.93362 1.77190 1.11044 1.14215 1.12549 1.46178 1.11620 1.43028 1.17245 0.70477 1.22601 0.95758 0.99666 0.90759 0.93729 0.98723 0.99996 0.92881 0.92215 0.97373 0.91314 0.90378 0.90269 0.93412 0.89424 0.91067 0.90649 0.79254 0.79729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.30 13.65 21.45 0.29 -58.01 16 2 C -0.04 -2.09 5.46 84.65 0.46 -1.63 16 3 Si 1.11 51.30 29.90 68.60 2.05 53.35 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.61 -35.77 9.11 25.60 0.23 -35.54 16 8 H 0.04 2.50 7.74 -2.91 -0.02 2.47 16 9 C 0.00 -0.22 3.58 29.85 0.11 -0.12 16 10 C 0.08 3.62 4.82 86.30 0.42 4.03 16 11 N -0.52 -18.27 4.48 -875.53 -3.92 -22.19 16 12 C 0.05 1.66 5.05 86.32 0.44 2.10 16 13 C -0.11 -2.55 6.09 30.64 0.19 -2.36 16 14 C -0.12 -2.73 6.00 30.68 0.18 -2.54 16 15 C -0.10 -2.43 5.36 30.65 0.16 -2.27 16 16 C 0.16 5.40 1.68 44.19 0.07 5.48 16 17 H 0.02 0.71 6.60 -2.39 -0.02 0.69 16 18 C -0.23 -7.61 3.74 -20.14 -0.08 -7.68 16 19 C 0.07 2.31 10.39 85.24 0.89 3.19 16 20 N -0.33 -10.70 12.70 -57.02 -0.72 -11.42 16 21 N -0.47 -13.33 7.36 -57.59 -0.42 -13.75 16 22 H 0.45 9.48 8.96 -213.34 -1.91 7.57 16 23 C 0.06 1.85 11.90 83.54 0.99 2.84 16 24 H 0.25 16.03 7.22 -92.71 -0.67 15.36 16 25 H -0.01 -0.30 6.28 -2.39 -0.01 -0.32 16 26 H -0.02 -1.03 6.55 -2.38 -0.02 -1.04 16 27 H 0.05 2.32 8.06 -2.39 -0.02 2.30 16 28 H 0.06 2.68 6.08 -2.39 -0.01 2.66 16 29 H 0.01 0.31 6.75 -2.39 -0.02 0.29 16 30 H 0.07 2.23 8.06 -2.39 -0.02 2.21 16 31 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.19 5.55 8.06 -2.91 -0.02 5.52 16 38 H 0.19 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -69.15 299.86 0.58 -68.57 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -0.76 Total: 17.97 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 4.07 Total: -34.51 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -4.77 Total: -105.38 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -69.15 0.58 -68.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114482849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.666 kcal (2) G-P(sol) polarization free energy of solvation -69.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds