Wall clock time and date at job start Mon Mar 30 2020 06:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39698 * 119.99664 * 2 1 4 4 C 1.38988 * 120.45900 * 0.02562 * 3 2 1 5 5 N 1.31785 * 120.82303 * 179.97438 * 4 3 2 6 6 C 1.31819 * 121.87068 * 359.73915 * 5 4 3 7 7 C 1.38941 * 120.81779 * 0.52747 * 6 5 4 8 8 N 1.39705 * 120.45384 * 179.75730 * 7 6 5 9 9 C 1.46499 * 119.99796 * 353.75410 * 8 7 6 10 10 C 1.50707 * 109.47250 * 90.00141 * 9 8 7 11 11 H 1.08005 * 119.99280 * 359.72239 * 10 9 8 12 12 C 1.37868 * 120.00207 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00482 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99958 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46659 * 89.99959 * 14 12 10 16 16 H 1.48497 * 109.47175 * 209.99770 * 14 12 10 17 17 H 1.48495 * 109.47236 * 330.00292 * 14 12 10 18 18 C 1.46497 * 120.00362 * 173.75802 * 8 7 6 19 19 C 1.52996 * 109.47165 * 304.96010 * 18 8 7 20 20 C 1.53000 * 109.47129 * 64.95880 * 18 8 7 21 21 C 1.39131 * 120.45278 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47124 * 60.00089 * 1 2 3 23 23 H 1.09005 * 109.46953 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47172 * 300.00179 * 1 2 3 25 25 H 0.97000 * 119.99615 * 179.97438 * 2 1 3 26 26 H 1.08003 * 119.58434 * 359.96191 * 4 3 2 27 27 H 1.07997 * 119.58651 * 180.28923 * 6 5 4 28 28 H 1.09004 * 109.47356 * 330.00255 * 9 8 7 29 29 H 1.08992 * 109.47482 * 210.00306 * 9 8 7 30 30 H 0.96994 * 120.00111 * 180.02562 * 13 12 10 31 31 H 1.09000 * 109.47188 * 184.95965 * 18 8 7 32 32 H 1.09005 * 109.47237 * 65.12336 * 19 18 8 33 33 H 1.09000 * 109.47495 * 185.12167 * 19 18 8 34 34 H 1.09002 * 109.47394 * 305.12136 * 19 18 8 35 35 H 1.09009 * 109.46972 * 55.24181 * 20 18 8 36 36 H 1.09003 * 109.47139 * 175.23838 * 20 18 8 37 37 H 1.08996 * 109.47471 * 295.24218 * 20 18 8 38 38 H 1.08009 * 120.84627 * 0.03626 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2099 0.0000 4 6 1.4781 2.4190 0.0005 5 7 2.1297 3.5645 0.0010 6 6 3.4469 3.6160 0.0062 7 6 4.2048 2.4515 0.0003 8 7 5.6004 2.5150 0.0007 9 6 6.2748 3.8088 -0.1307 10 6 6.4990 4.3998 1.2374 11 1 6.1678 3.8670 2.1165 12 6 7.1213 5.6233 1.3663 13 7 7.5188 6.2750 0.2955 14 14 7.3985 6.3560 3.0622 15 1 8.7151 5.9101 3.5847 16 1 7.3785 7.8380 2.9704 17 1 6.3225 5.9022 3.9794 18 6 6.3895 1.2877 0.1324 19 6 5.9619 0.5397 1.3967 20 6 6.1563 0.3978 -1.0901 21 6 3.5547 1.2209 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.9500 -0.8401 0.0004 26 1 0.3981 2.4198 0.0003 27 1 3.9430 4.5752 0.0111 28 1 5.6545 4.4836 -0.7208 29 1 7.2346 3.6695 -0.6280 30 1 7.9569 7.1356 0.3863 31 1 7.4473 1.5415 0.2006 32 1 4.9295 0.2065 1.2902 33 1 6.6093 -0.3247 1.5440 34 1 6.0421 1.2045 2.2569 35 1 6.3809 0.9597 -1.9967 36 1 6.8065 -0.4753 -1.0333 37 1 5.1154 0.0749 -1.1113 38 1 4.1159 0.2981 -0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122240540.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:20 Heat of formation + Delta-G solvation = 52.185396 kcal Electronic energy + Delta-G solvation = -18614.417490 eV Core-core repulsion = 15878.263160 eV Total energy + Delta-G solvation = -2736.154329 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.81999 -37.21873 -35.46559 -33.23783 -31.66787 -30.75305 -28.62801 -26.83154 -26.55682 -25.59994 -22.89225 -22.51782 -21.63679 -19.41089 -16.99707 -16.43530 -16.27846 -15.94369 -15.02490 -14.52980 -14.26619 -14.12130 -13.98152 -13.52448 -13.36544 -12.78269 -12.31364 -12.26677 -12.07936 -11.92701 -11.68992 -11.39178 -11.19951 -11.02909 -10.80221 -10.55511 -10.25977 -10.19060 -10.04686 -9.79585 -9.15632 -8.68869 -8.47605 -7.30213 -6.51398 -6.02408 -4.15260 2.17336 2.27474 3.28620 3.35970 3.40502 3.61117 4.03803 4.42259 4.72156 5.12236 5.22276 5.24778 5.47479 5.48132 5.55561 5.58912 5.64610 5.69509 5.84448 5.87746 5.88195 6.00831 6.08373 6.15041 6.28516 6.48374 6.66558 6.71640 6.86518 7.00599 7.22140 7.31498 7.62301 7.82610 7.84091 8.15396 8.23944 8.40862 8.93274 8.97443 9.51810 10.97799 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.006692 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.352692 B = 4183.387674 C = 4766.617032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.754 5.754 3 C 0.196 3.804 4 C -0.059 4.059 5 N -0.418 5.418 6 C -0.013 4.013 7 C 0.237 3.763 8 N -0.595 5.595 9 C 0.249 3.751 10 C -0.531 4.531 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.281 1.281 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.149 3.851 19 C -0.176 4.176 20 C -0.176 4.176 21 C -0.268 4.268 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.395 0.605 26 H 0.134 0.866 27 H 0.160 0.840 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.552 -13.598 -1.356 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.385 5.385 3 C 0.092 3.908 4 C -0.222 4.222 5 N -0.125 5.125 6 C -0.180 4.180 7 C 0.125 3.875 8 N -0.300 5.300 9 C 0.129 3.871 10 C -0.570 4.570 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.198 1.198 18 C 0.044 3.956 19 C -0.233 4.233 20 C -0.234 4.234 21 C -0.303 4.303 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.228 0.772 26 H 0.152 0.848 27 H 0.178 0.822 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.917 -12.565 -1.426 14.919 hybrid contribution 0.928 -0.649 0.986 1.501 sum -6.989 -13.214 -0.440 14.955 Atomic orbital electron populations 1.21444 0.80623 1.01600 1.01060 1.44243 1.05239 1.05113 1.83922 1.18574 0.91263 0.87037 0.93968 1.21717 0.98892 0.86521 1.15023 1.67312 1.09731 1.28311 1.07142 1.22383 0.88417 0.97974 1.09182 1.18626 0.85104 0.93508 0.90221 1.47310 1.00909 1.07706 1.74066 1.19355 0.92469 0.78261 0.97010 1.21557 1.38472 1.03996 0.92981 0.92187 1.24940 0.95371 0.96711 0.96891 1.69922 1.40032 1.15068 1.28242 0.86537 0.78510 0.78318 0.84354 1.20716 1.21085 1.19807 1.20811 0.96301 0.84946 0.93541 1.22439 1.02059 1.00139 0.98703 1.22484 1.02301 0.99581 0.98995 1.20892 0.92048 0.97776 1.19570 0.93175 0.91466 0.93174 0.77212 0.84841 0.82241 0.94517 0.95005 0.92638 0.89467 0.91413 0.92744 0.91840 0.92389 0.92536 0.91587 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.91 9.96 59.85 0.60 1.50 16 2 N -0.75 -9.06 5.89 -65.30 -0.38 -9.44 16 3 C 0.20 3.17 6.67 -83.66 -0.56 2.61 16 4 C -0.06 -1.06 10.49 -17.29 -0.18 -1.24 16 5 N -0.42 -8.75 10.35 -12.90 -0.13 -8.88 16 6 C -0.01 -0.29 10.33 -17.30 -0.18 -0.47 16 7 C 0.24 4.81 6.13 -83.66 -0.51 4.29 16 8 N -0.60 -12.29 2.52 -165.45 -0.42 -12.70 16 9 C 0.25 6.09 4.75 -5.19 -0.02 6.07 16 10 C -0.53 -14.25 9.32 -34.44 -0.32 -14.57 16 11 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 14 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.15 2.55 3.26 -67.93 -0.22 2.33 16 19 C -0.18 -2.71 8.91 37.16 0.33 -2.38 16 20 C -0.18 -2.50 9.08 37.16 0.34 -2.16 16 21 C -0.27 -4.61 7.03 -38.90 -0.27 -4.89 16 22 H 0.05 0.47 7.96 -51.93 -0.41 0.05 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.48 7.96 -51.93 -0.41 0.06 16 25 H 0.39 3.96 8.85 -40.82 -0.36 3.60 16 26 H 0.13 2.06 6.75 -52.48 -0.35 1.71 16 27 H 0.16 3.83 6.27 -52.49 -0.33 3.50 16 28 H 0.04 0.96 6.50 -51.93 -0.34 0.63 16 29 H 0.03 0.82 7.96 -51.93 -0.41 0.40 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.09 1.56 7.84 -51.93 -0.41 1.15 16 32 H 0.07 1.01 4.66 -51.93 -0.24 0.77 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.91 4.87 -51.93 -0.25 0.66 16 38 H 0.14 2.11 3.28 -52.48 -0.17 1.93 16 LS Contribution 304.03 15.07 4.58 4.58 Total: -1.00 -29.51 304.03 -7.10 -36.61 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.36 Total: 5.50 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -1.10 Total: -7.27 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.20 Total: -55.77 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.51 -7.10 -36.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122240540.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.798 kcal (2) G-P(sol) polarization free energy of solvation -29.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds