Wall clock time and date at job start Mon Mar 30 2020 06:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39698 * 119.99664 * 2 1 4 4 C 1.38988 * 120.45900 * 0.02562 * 3 2 1 5 5 N 1.31785 * 120.82303 * 179.97438 * 4 3 2 6 6 C 1.31819 * 121.87068 * 359.73915 * 5 4 3 7 7 C 1.38941 * 120.81779 * 0.52747 * 6 5 4 8 8 N 1.39705 * 120.45384 * 179.75730 * 7 6 5 9 9 C 1.46499 * 119.99796 * 353.75410 * 8 7 6 10 10 C 1.50707 * 109.47250 * 90.00141 * 9 8 7 11 11 H 1.08005 * 119.99280 * 359.72239 * 10 9 8 12 12 C 1.37868 * 120.00207 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00482 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99958 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46659 * 89.99959 * 14 12 10 16 16 H 1.48497 * 109.47175 * 209.99770 * 14 12 10 17 17 H 1.48495 * 109.47236 * 330.00292 * 14 12 10 18 18 C 1.46497 * 120.00362 * 173.75802 * 8 7 6 19 19 C 1.52996 * 109.47165 * 304.96010 * 18 8 7 20 20 C 1.53000 * 109.47129 * 64.95880 * 18 8 7 21 21 C 1.39131 * 120.45278 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47124 * 60.00089 * 1 2 3 23 23 H 1.09005 * 109.46953 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47172 * 300.00179 * 1 2 3 25 25 H 0.97000 * 119.99615 * 179.97438 * 2 1 3 26 26 H 1.08003 * 119.58434 * 359.96191 * 4 3 2 27 27 H 1.07997 * 119.58651 * 180.28923 * 6 5 4 28 28 H 1.09004 * 109.47356 * 330.00255 * 9 8 7 29 29 H 1.08992 * 109.47482 * 210.00306 * 9 8 7 30 30 H 0.96994 * 120.00111 * 180.02562 * 13 12 10 31 31 H 1.09000 * 109.47188 * 184.95965 * 18 8 7 32 32 H 1.09005 * 109.47237 * 65.12336 * 19 18 8 33 33 H 1.09000 * 109.47495 * 185.12167 * 19 18 8 34 34 H 1.09002 * 109.47394 * 305.12136 * 19 18 8 35 35 H 1.09009 * 109.46972 * 55.24181 * 20 18 8 36 36 H 1.09003 * 109.47139 * 175.23838 * 20 18 8 37 37 H 1.08996 * 109.47471 * 295.24218 * 20 18 8 38 38 H 1.08009 * 120.84627 * 0.03626 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2099 0.0000 4 6 1.4781 2.4190 0.0005 5 7 2.1297 3.5645 0.0010 6 6 3.4469 3.6160 0.0062 7 6 4.2048 2.4515 0.0003 8 7 5.6004 2.5150 0.0007 9 6 6.2748 3.8088 -0.1307 10 6 6.4990 4.3998 1.2374 11 1 6.1678 3.8670 2.1165 12 6 7.1213 5.6233 1.3663 13 7 7.5188 6.2750 0.2955 14 14 7.3985 6.3560 3.0622 15 1 8.7151 5.9101 3.5847 16 1 7.3785 7.8380 2.9704 17 1 6.3225 5.9022 3.9794 18 6 6.3895 1.2877 0.1324 19 6 5.9619 0.5397 1.3967 20 6 6.1563 0.3978 -1.0901 21 6 3.5547 1.2209 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.9500 -0.8401 0.0004 26 1 0.3981 2.4198 0.0003 27 1 3.9430 4.5752 0.0111 28 1 5.6545 4.4836 -0.7208 29 1 7.2346 3.6695 -0.6280 30 1 7.9569 7.1356 0.3863 31 1 7.4473 1.5415 0.2006 32 1 4.9295 0.2065 1.2902 33 1 6.6093 -0.3247 1.5440 34 1 6.0421 1.2045 2.2569 35 1 6.3809 0.9597 -1.9967 36 1 6.8065 -0.4753 -1.0333 37 1 5.1154 0.0749 -1.1113 38 1 4.1159 0.2981 -0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122240540.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:20 Heat of formation + Delta-G solvation = 32.886936 kcal Electronic energy + Delta-G solvation = -18615.254334 eV Core-core repulsion = 15878.263160 eV Total energy + Delta-G solvation = -2736.991173 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27591 -38.64997 -36.67975 -35.18830 -33.24081 -32.20831 -30.11542 -28.33102 -28.00046 -26.74665 -24.62362 -24.07948 -23.04005 -20.81618 -18.62968 -18.27231 -17.69033 -17.29729 -16.71330 -16.08366 -15.56263 -15.44916 -15.31388 -14.91421 -14.84232 -14.11440 -13.98391 -13.55432 -13.46938 -13.15841 -13.05370 -12.90126 -12.75553 -12.70904 -12.42918 -12.32905 -11.93099 -11.69900 -11.44648 -11.38045 -10.88890 -10.61935 -10.16682 -8.57936 -8.28500 -7.88456 -6.33829 0.71027 0.80477 1.36987 1.39452 1.49644 2.31040 2.45313 2.72329 3.09444 3.21872 3.91338 4.05473 4.20140 4.28431 4.33054 4.36612 4.46813 4.57814 4.60040 4.76847 4.78555 4.82865 4.93190 5.02358 5.04544 5.09830 5.14683 5.19219 5.35397 5.46393 5.53312 5.68376 5.72095 6.09217 6.37001 6.47608 6.76871 6.85191 6.95206 7.37483 7.46312 8.85997 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.006692 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.352692 B = 4183.387674 C = 4766.617032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.738 5.738 3 C 0.211 3.789 4 C -0.062 4.062 5 N -0.439 5.439 6 C -0.057 4.057 7 C 0.225 3.775 8 N -0.604 5.604 9 C 0.267 3.733 10 C -0.537 4.537 11 H 0.049 0.951 12 C 0.015 3.985 13 N -0.925 5.925 14 Si 0.958 3.042 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.275 1.275 18 C 0.139 3.861 19 C -0.166 4.166 20 C -0.164 4.164 21 C -0.261 4.261 22 H 0.052 0.948 23 H 0.102 0.898 24 H 0.050 0.950 25 H 0.409 0.591 26 H 0.160 0.840 27 H 0.121 0.879 28 H 0.008 0.992 29 H 0.014 0.986 30 H 0.266 0.734 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.033 0.967 35 H 0.042 0.958 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 -16.826 -0.660 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.368 5.368 3 C 0.103 3.897 4 C -0.226 4.226 5 N -0.146 5.146 6 C -0.221 4.221 7 C 0.115 3.885 8 N -0.310 5.310 9 C 0.145 3.855 10 C -0.576 4.576 11 H 0.067 0.933 12 C -0.185 4.185 13 N -0.565 5.565 14 Si 0.783 3.217 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.200 1.200 18 C 0.036 3.964 19 C -0.223 4.223 20 C -0.222 4.222 21 C -0.296 4.296 22 H 0.071 0.929 23 H 0.121 0.879 24 H 0.069 0.931 25 H 0.245 0.755 26 H 0.178 0.822 27 H 0.138 0.862 28 H 0.026 0.974 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.224 -15.848 -0.730 18.352 hybrid contribution 1.139 0.222 0.736 1.374 sum -8.085 -15.627 0.006 17.594 Atomic orbital electron populations 1.21722 0.78506 1.04115 1.01191 1.44374 1.06586 1.04064 1.81747 1.18592 0.91078 0.88255 0.91773 1.22211 1.00104 0.86386 1.13906 1.67195 1.09342 1.30347 1.07759 1.21883 0.89278 0.97344 1.13604 1.18678 0.84707 0.94245 0.90901 1.47168 1.01408 1.07332 1.75123 1.18821 0.91228 0.80074 0.95360 1.21743 1.38041 1.04264 0.93512 0.93255 1.25722 0.95195 0.97123 1.00435 1.70028 1.40860 1.15476 1.30175 0.85555 0.78609 0.77570 0.79938 1.19448 1.20590 1.20002 1.21084 0.95114 0.84191 0.96052 1.22359 1.03335 1.00323 0.96311 1.22379 1.03510 0.99717 0.96555 1.21075 0.92634 0.97273 1.18610 0.92920 0.87922 0.93090 0.75519 0.82245 0.86167 0.97365 0.96795 0.92460 0.90970 0.90512 0.89332 0.94777 0.93850 0.89212 0.90776 0.81617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 9.96 127.77 1.27 2.50 16 2 N -0.74 -14.41 5.89 -360.52 -2.12 -16.54 16 3 C 0.21 6.25 6.67 38.28 0.26 6.51 16 4 C -0.06 -2.11 10.49 84.88 0.89 -1.22 16 5 N -0.44 -18.84 10.35 -194.73 -2.01 -20.86 16 6 C -0.06 -2.66 10.33 84.86 0.88 -1.79 16 7 C 0.22 9.34 6.13 38.28 0.23 9.58 16 8 N -0.60 -25.91 2.52 -677.35 -1.70 -27.62 16 9 C 0.27 13.99 4.75 85.64 0.41 14.40 16 10 C -0.54 -30.27 9.32 25.60 0.24 -30.03 16 11 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 12 C 0.01 0.82 5.46 84.65 0.46 1.29 16 13 N -0.93 -54.88 13.29 21.44 0.28 -54.60 16 14 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 C 0.14 4.70 3.26 44.99 0.15 4.85 16 19 C -0.17 -4.80 8.91 71.98 0.64 -4.16 16 20 C -0.16 -4.30 9.08 71.98 0.65 -3.65 16 21 C -0.26 -8.50 7.03 22.71 0.16 -8.34 16 22 H 0.05 0.76 7.96 -2.39 -0.02 0.74 16 23 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 24 H 0.05 0.75 7.96 -2.39 -0.02 0.73 16 25 H 0.41 6.05 8.85 -92.71 -0.82 5.23 16 26 H 0.16 4.51 6.75 -2.91 -0.02 4.49 16 27 H 0.12 6.43 6.27 -2.91 -0.02 6.41 16 28 H 0.01 0.48 6.50 -2.38 -0.02 0.47 16 29 H 0.01 0.77 7.96 -2.39 -0.02 0.75 16 30 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.07 2.62 7.84 -2.39 -0.02 2.60 16 32 H 0.08 2.05 4.66 -2.38 -0.01 2.04 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.81 4.87 -2.39 -0.01 1.80 16 38 H 0.17 4.41 3.28 -2.91 -0.01 4.40 16 Total: -1.00 -67.90 304.03 2.95 -64.94 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.25 Total: 17.78 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 6.24 Total: -10.06 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -5.56 Total: -119.60 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -67.90 2.95 -64.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122240540.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.831 kcal (2) G-P(sol) polarization free energy of solvation -67.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds