Wall clock time and date at job start Mon Mar 30 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46739 * 2 1 4 4 C 1.53000 * 109.47159 * 119.99940 * 2 1 3 5 5 C 1.50693 * 109.46880 * 175.00463 * 4 2 1 6 6 C 1.38816 * 119.99348 * 125.00049 * 5 4 2 7 7 C 1.38565 * 118.04001 * 179.97438 * 6 5 4 8 8 C 1.39481 * 117.90510 * 359.97438 * 7 6 5 9 9 N 1.39048 * 120.15808 * 179.97438 * 8 7 6 10 10 C 1.46494 * 119.99823 * 4.99891 * 9 8 7 11 11 C 1.46503 * 119.99823 * 184.99668 * 9 8 7 12 12 C 1.50700 * 109.46505 * 90.00033 * 11 9 8 13 13 H 1.07994 * 120.00652 * 359.97438 * 12 11 9 14 14 C 1.37881 * 119.99470 * 180.02562 * 12 11 9 15 15 N 1.31507 * 120.00294 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99871 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47189 * 59.99650 * 16 14 12 18 18 H 1.48492 * 109.46844 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46847 * 299.99786 * 16 14 12 20 20 N 1.32489 * 119.68485 * 0.02562 * 8 7 6 21 21 N 1.28356 * 122.07008 * 359.97438 * 20 8 7 22 22 H 1.08992 * 109.47245 * 299.99885 * 1 2 3 23 23 H 1.09000 * 109.47408 * 60.00350 * 1 2 3 24 24 H 1.09003 * 109.47003 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47014 * 240.00143 * 2 1 3 26 26 H 1.09000 * 109.46885 * 299.99971 * 3 2 1 27 27 H 1.08997 * 109.46938 * 59.99619 * 3 2 1 28 28 H 1.09002 * 109.46884 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46970 * 55.00314 * 4 2 1 30 30 H 1.09001 * 109.46876 * 295.00165 * 4 2 1 31 31 H 1.08000 * 120.98426 * 359.97438 * 6 5 4 32 32 H 1.08007 * 121.04725 * 179.72557 * 7 6 5 33 33 H 1.09000 * 109.47388 * 90.00307 * 10 9 8 34 34 H 1.09008 * 109.47138 * 210.00285 * 10 9 8 35 35 H 1.09001 * 109.47388 * 329.99781 * 10 9 8 36 36 H 1.08993 * 109.47176 * 209.99603 * 11 9 8 37 37 H 1.09001 * 109.46946 * 330.00222 * 11 9 8 38 38 H 0.97004 * 120.00324 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8292 1.1889 6 6 4.3152 -0.3423 2.2338 7 6 5.6921 -0.4632 2.1365 8 6 6.2152 -1.0677 0.9934 9 7 7.5903 -1.2126 0.8469 10 6 8.4876 -0.8306 1.9400 11 6 8.1416 -1.7474 -0.4006 12 6 8.4131 -0.6142 -1.3562 13 1 8.1963 0.4026 -1.0637 14 6 8.9375 -0.8756 -2.6043 15 7 9.2010 -2.1137 -2.9607 16 14 9.2747 0.5291 -3.7887 17 1 10.2510 1.4673 -3.1787 18 1 9.8335 -0.0129 -5.0531 19 1 8.0084 1.2498 -4.0752 20 7 5.3955 -1.5022 0.0475 21 7 4.1209 -1.3868 0.1445 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6765 1.9563 0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6054 -1.7198 1.2951 30 1 1.7516 -0.1583 2.1369 31 1 3.8572 0.1171 3.0973 32 1 6.3402 -0.0971 2.9191 33 1 8.6506 -1.6881 2.5929 34 1 9.4417 -0.5008 1.5285 35 1 8.0385 -0.0186 2.5119 36 1 9.0714 -2.2756 -0.1899 37 1 7.4255 -2.4366 -0.8483 38 1 9.5702 -2.2976 -3.8387 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259203900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:56 Heat of formation + Delta-G solvation = 47.905192 kcal Electronic energy + Delta-G solvation = -18076.616978 eV Core-core repulsion = 15340.277045 eV Total energy + Delta-G solvation = -2736.339933 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39192 -36.95389 -35.74132 -32.85416 -32.43181 -30.91279 -28.05915 -27.22600 -27.05701 -24.89447 -24.01044 -22.45921 -20.89408 -19.88659 -16.82850 -16.75372 -16.30950 -15.49517 -14.98023 -14.58263 -14.42680 -13.98132 -13.80186 -13.48332 -13.11406 -12.86539 -12.51186 -12.21041 -12.11696 -11.81459 -11.54713 -11.18790 -11.11589 -10.90947 -10.87079 -10.56017 -10.53459 -10.29201 -10.13481 -9.95174 -9.65202 -9.23314 -8.75968 -8.41173 -6.94275 -6.00812 -4.07859 1.45984 1.84461 3.32356 3.37026 3.39914 3.71481 4.29688 4.45313 4.73450 4.86267 5.07190 5.08856 5.18049 5.27679 5.30191 5.32661 5.57249 5.64444 5.67624 5.72737 5.79544 5.87248 5.88219 5.94858 6.07042 6.14805 6.17828 6.23493 6.38740 6.49497 6.62368 6.66598 7.08091 7.45745 7.82324 8.03599 8.17330 8.24598 8.94905 9.56148 9.66394 11.04897 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.005987 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.961418 B = 4675.567799 C = 5475.807559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.143 4.143 4 C -0.043 4.043 5 C -0.016 4.016 6 C -0.081 4.081 7 C -0.200 4.200 8 C 0.351 3.649 9 N -0.583 5.583 10 C 0.096 3.904 11 C 0.250 3.750 12 C -0.527 4.527 13 H 0.054 0.946 14 C 0.064 3.936 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.277 1.277 20 N -0.283 5.283 21 N -0.197 5.197 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.031 0.969 37 H 0.052 0.948 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.311 4.574 11.618 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.082 4.082 5 C -0.165 4.165 6 C -0.109 4.109 7 C -0.235 4.235 8 C 0.109 3.891 9 N -0.293 5.293 10 C -0.048 4.048 11 C 0.131 3.869 12 C -0.566 4.566 13 H 0.072 0.928 14 C -0.138 4.138 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.202 1.202 20 N -0.136 5.136 21 N -0.040 5.040 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.096 3.689 9.968 15.365 hybrid contribution 0.564 1.577 0.752 1.836 sum -10.531 5.266 10.720 15.923 Atomic orbital electron populations 1.21837 0.95466 1.01545 1.01396 1.21100 0.94903 0.96343 0.98888 1.21804 1.01362 0.95918 1.00998 1.20304 0.88684 1.00953 0.98292 1.22270 0.97669 1.02899 0.93678 1.21860 0.93287 0.97079 0.98700 1.21797 0.95988 1.05467 1.00201 1.20129 0.87949 0.90482 0.90564 1.47004 1.00004 1.64620 1.17631 1.21626 0.94774 0.98838 0.89600 1.19392 0.94350 0.94669 0.78468 1.21382 1.42447 0.93426 0.99360 0.92756 1.24898 0.95461 0.95693 0.97761 1.69914 1.43940 1.18320 1.21001 0.86591 0.78529 0.82250 0.80236 1.20361 1.21109 1.20219 1.73245 0.96552 1.20121 1.23672 1.72695 1.03357 1.08581 1.19389 0.93022 0.92823 0.92710 0.89830 0.93009 0.93170 0.92794 0.90728 0.91143 0.84800 0.84463 0.93759 0.90415 0.92517 0.95125 0.92999 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.19 37.16 0.34 -1.07 16 2 C -0.09 -1.16 2.85 -90.62 -0.26 -1.42 16 3 C -0.14 -1.80 9.01 37.16 0.33 -1.46 16 4 C -0.04 -0.53 5.10 -27.89 -0.14 -0.68 16 5 C -0.02 -0.26 5.24 -82.40 -0.43 -0.69 16 6 C -0.08 -1.17 9.81 -39.25 -0.39 -1.56 16 7 C -0.20 -3.29 9.35 -39.00 -0.36 -3.66 16 8 C 0.35 7.40 7.45 -154.77 -1.15 6.24 16 9 N -0.58 -12.62 2.97 -182.95 -0.54 -13.16 16 10 C 0.10 1.56 10.30 59.84 0.62 2.18 16 11 C 0.25 6.55 5.23 -5.19 -0.03 6.52 16 12 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 13 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 15 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 16 Si 0.90 22.05 29.54 -169.99 -5.02 17.02 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 N -0.28 -6.65 10.27 31.23 0.32 -6.33 16 21 N -0.20 -4.06 10.95 33.61 0.37 -3.69 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 1.24 7.82 -51.93 -0.41 0.84 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.81 7.38 -51.93 -0.38 0.43 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.70 7.92 -51.93 -0.41 0.28 16 31 H 0.13 1.41 8.00 -52.49 -0.42 0.99 16 32 H 0.14 1.83 6.14 -52.48 -0.32 1.51 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.29 8.07 -51.92 -0.42 0.87 16 35 H 0.06 0.77 6.03 -51.93 -0.31 0.46 16 36 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.05 1.51 7.32 -51.93 -0.38 1.13 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 316.58 15.07 4.77 4.77 Total: -1.00 -32.01 316.58 -7.24 -39.25 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.98 Total: -2.91 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -1.89 Total: -9.12 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.88 Total: -49.02 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.01 -7.24 -39.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259203900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.155 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds