Wall clock time and date at job start Mon Mar 30 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46739 * 2 1 4 4 C 1.53000 * 109.47159 * 119.99940 * 2 1 3 5 5 C 1.50693 * 109.46880 * 175.00463 * 4 2 1 6 6 C 1.38816 * 119.99348 * 125.00049 * 5 4 2 7 7 C 1.38565 * 118.04001 * 179.97438 * 6 5 4 8 8 C 1.39481 * 117.90510 * 359.97438 * 7 6 5 9 9 N 1.39048 * 120.15808 * 179.97438 * 8 7 6 10 10 C 1.46494 * 119.99823 * 4.99891 * 9 8 7 11 11 C 1.46503 * 119.99823 * 184.99668 * 9 8 7 12 12 C 1.50700 * 109.46505 * 90.00033 * 11 9 8 13 13 H 1.07994 * 120.00652 * 359.97438 * 12 11 9 14 14 C 1.37881 * 119.99470 * 180.02562 * 12 11 9 15 15 N 1.31507 * 120.00294 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99871 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47189 * 59.99650 * 16 14 12 18 18 H 1.48492 * 109.46844 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46847 * 299.99786 * 16 14 12 20 20 N 1.32489 * 119.68485 * 0.02562 * 8 7 6 21 21 N 1.28356 * 122.07008 * 359.97438 * 20 8 7 22 22 H 1.08992 * 109.47245 * 299.99885 * 1 2 3 23 23 H 1.09000 * 109.47408 * 60.00350 * 1 2 3 24 24 H 1.09003 * 109.47003 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47014 * 240.00143 * 2 1 3 26 26 H 1.09000 * 109.46885 * 299.99971 * 3 2 1 27 27 H 1.08997 * 109.46938 * 59.99619 * 3 2 1 28 28 H 1.09002 * 109.46884 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46970 * 55.00314 * 4 2 1 30 30 H 1.09001 * 109.46876 * 295.00165 * 4 2 1 31 31 H 1.08000 * 120.98426 * 359.97438 * 6 5 4 32 32 H 1.08007 * 121.04725 * 179.72557 * 7 6 5 33 33 H 1.09000 * 109.47388 * 90.00307 * 10 9 8 34 34 H 1.09008 * 109.47138 * 210.00285 * 10 9 8 35 35 H 1.09001 * 109.47388 * 329.99781 * 10 9 8 36 36 H 1.08993 * 109.47176 * 209.99603 * 11 9 8 37 37 H 1.09001 * 109.46946 * 330.00222 * 11 9 8 38 38 H 0.97004 * 120.00324 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8292 1.1889 6 6 4.3152 -0.3423 2.2338 7 6 5.6921 -0.4632 2.1365 8 6 6.2152 -1.0677 0.9934 9 7 7.5903 -1.2126 0.8469 10 6 8.4876 -0.8306 1.9400 11 6 8.1416 -1.7474 -0.4006 12 6 8.4131 -0.6142 -1.3562 13 1 8.1963 0.4026 -1.0637 14 6 8.9375 -0.8756 -2.6043 15 7 9.2010 -2.1137 -2.9607 16 14 9.2747 0.5291 -3.7887 17 1 10.2510 1.4673 -3.1787 18 1 9.8335 -0.0129 -5.0531 19 1 8.0084 1.2498 -4.0752 20 7 5.3955 -1.5022 0.0475 21 7 4.1209 -1.3868 0.1445 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6765 1.9563 0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6054 -1.7198 1.2951 30 1 1.7516 -0.1583 2.1369 31 1 3.8572 0.1171 3.0973 32 1 6.3402 -0.0971 2.9191 33 1 8.6506 -1.6881 2.5929 34 1 9.4417 -0.5008 1.5285 35 1 8.0385 -0.0186 2.5119 36 1 9.0714 -2.2756 -0.1899 37 1 7.4255 -2.4366 -0.8483 38 1 9.5702 -2.2976 -3.8387 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259203900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:56 Heat of formation + Delta-G solvation = 28.348497 kcal Electronic energy + Delta-G solvation = -18077.465019 eV Core-core repulsion = 15340.277045 eV Total energy + Delta-G solvation = -2737.187975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.78902 -38.32139 -36.99290 -34.87318 -33.82714 -32.32797 -29.84760 -28.53053 -27.95096 -26.42083 -25.60164 -23.98321 -22.44391 -20.89031 -18.71688 -18.17474 -18.09937 -16.67779 -16.54450 -16.27848 -15.62603 -15.32312 -15.09549 -14.87768 -14.43616 -14.22692 -13.87141 -13.56933 -13.28804 -13.10973 -12.99081 -12.75681 -12.63798 -12.50734 -12.27323 -12.11554 -11.96398 -11.74995 -11.53281 -11.38367 -11.13749 -10.78553 -10.63560 -10.13442 -8.62050 -8.11792 -6.35110 0.15620 0.49227 1.33878 1.37952 1.45290 2.19704 2.40002 2.90345 3.08440 3.50558 3.77551 3.90203 3.95949 4.14465 4.16836 4.22378 4.41538 4.46542 4.64947 4.76022 4.82001 4.83942 4.86279 4.91098 4.97638 5.04589 5.08585 5.10244 5.24195 5.27374 5.36172 5.48629 5.57157 5.60702 5.67092 6.06612 6.29663 6.57004 6.76734 7.33868 8.24308 8.85653 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.005987 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.961418 B = 4675.567799 C = 5475.807559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 C -0.140 4.140 4 C -0.042 4.042 5 C -0.005 4.005 6 C -0.069 4.069 7 C -0.189 4.189 8 C 0.323 3.677 9 N -0.602 5.602 10 C 0.094 3.906 11 C 0.270 3.730 12 C -0.537 4.537 13 H 0.046 0.954 14 C 0.011 3.989 15 N -0.927 5.927 16 Si 0.963 3.037 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.281 1.281 20 N -0.352 5.352 21 N -0.244 5.244 22 H 0.074 0.926 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.020 0.980 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.192 0.808 32 H 0.176 0.824 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.016 0.984 37 H 0.009 0.991 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.973 6.850 14.240 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 C -0.197 4.197 4 C -0.081 4.081 5 C -0.157 4.157 6 C -0.097 4.097 7 C -0.222 4.222 8 C 0.081 3.919 9 N -0.314 5.314 10 C -0.048 4.048 11 C 0.149 3.851 12 C -0.576 4.576 13 H 0.065 0.935 14 C -0.188 4.188 15 N -0.567 5.567 16 Si 0.787 3.213 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.207 1.207 20 N -0.202 5.202 21 N -0.084 5.084 22 H 0.093 0.907 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.039 0.961 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.209 0.791 32 H 0.193 0.807 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.034 0.966 37 H 0.027 0.973 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.782 5.963 12.601 18.913 hybrid contribution 0.908 0.880 0.039 1.265 sum -11.874 6.843 12.640 18.643 Atomic orbital electron populations 1.21773 0.92941 1.02244 1.02575 1.21063 0.96944 0.95831 0.97501 1.21781 0.99100 0.96329 1.02491 1.20505 0.85747 1.02082 0.99785 1.23075 0.99891 1.00043 0.92668 1.22490 0.92374 0.95326 0.99477 1.22203 0.97457 1.03594 0.98981 1.20478 0.87458 0.91794 0.92166 1.46840 1.01092 1.66123 1.17301 1.21834 0.93718 1.00744 0.88525 1.18739 0.92420 0.93404 0.80571 1.21633 1.42172 0.93535 1.00286 0.93544 1.25782 0.95235 0.98254 0.99539 1.70036 1.44739 1.20325 1.21559 0.85550 0.78335 0.79201 0.78192 1.18619 1.20157 1.20691 1.73067 0.98101 1.22751 1.26306 1.72586 1.02583 1.11211 1.22043 0.90732 0.92757 0.92308 0.93651 0.92980 0.90287 0.96114 0.90062 0.87021 0.79126 0.80719 0.91800 0.91429 0.89154 0.96634 0.97263 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.19 71.98 0.66 -1.64 16 2 C -0.09 -2.19 2.85 -10.79 -0.03 -2.22 16 3 C -0.14 -3.24 9.01 71.98 0.65 -2.59 16 4 C -0.04 -0.92 5.10 29.85 0.15 -0.76 16 5 C 0.00 -0.15 5.24 42.70 0.22 0.07 16 6 C -0.07 -1.73 9.81 22.49 0.22 -1.51 16 7 C -0.19 -5.71 9.35 22.65 0.21 -5.49 16 8 C 0.32 13.82 7.45 133.11 0.99 14.81 16 9 N -0.60 -26.70 2.97 -732.73 -2.18 -28.88 16 10 C 0.09 2.98 10.30 127.77 1.32 4.30 16 11 C 0.27 15.00 5.23 85.63 0.45 15.45 16 12 C -0.54 -31.73 9.39 25.60 0.24 -31.49 16 13 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 14 C 0.01 0.65 5.46 84.66 0.46 1.11 16 15 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 16 Si 0.96 46.16 29.54 68.60 2.03 48.19 16 17 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 20 N -0.35 -17.38 10.27 -55.10 -0.57 -17.95 16 21 N -0.24 -10.41 10.95 -47.57 -0.52 -10.93 16 22 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.04 1.39 7.82 -2.39 -0.02 1.37 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.02 0.59 7.38 -2.39 -0.02 0.58 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.11 1.54 7.92 -2.39 -0.02 1.52 16 31 H 0.19 2.63 8.00 -2.91 -0.02 2.61 16 32 H 0.18 3.82 6.14 -2.91 -0.02 3.80 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.24 8.07 -2.38 -0.02 2.22 16 35 H 0.09 2.18 6.03 -2.39 -0.01 2.17 16 36 H 0.02 0.89 8.07 -2.39 -0.02 0.87 16 37 H 0.01 0.58 7.32 -2.39 -0.02 0.57 16 38 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -76.42 316.58 5.62 -70.80 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.02 Total: 5.73 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 5.55 Total: -9.96 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -2.98 Total: -114.76 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -76.42 5.62 -70.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259203900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.153 kcal (2) G-P(sol) polarization free energy of solvation -76.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds